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• R: including model specifications in xtable(anova(...))

  - by HamiltonUlmer

  Hello R comrades: I have a bunch of loglinear models, which, for our purposes will just be glm() objects called mx, my, mz. I want to get a nicely-formatted xtable of the analysis of deviance, so naturally I would want to perform xtable(anova(mx, my, mz, test = "Chisq")). The vanilla output of xtable, however, doesn't include the model specifications. I'd like to include those for all the ANOVA tests I'm running, so if there is not a param I'm missing that does this I'll probably just have to hack up my own solution. But looking over the help page, there doesn't seem to be an easy way to include the model specifications. Any thoughts? Alternatives? If it helps this was done in 2.9.1 with xtable 1.5-5.

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• How to remotely open gedit with SFTP URL in Gnome through SSH?

  - by Álvaro Justen

  My setup is weird and I can't change it now. I have two machines: local-machine: it's my desktop running Ubuntu with Gnome remote-machine: it's one virtual machine, also running Ubuntu but without X In both machines I have my private and public SSH keys. I need to run SSH from remote-machine to local-machine and run gedit (in local-machine, under the default $DISPLAY) but openning a file in remote-machine throught SFTP. Something like this: myuser@remote-machine:~$ ssh local-machine "DISPLAY=:0.0 gedit sftp://remote-machine/some/file" The command above doesn't work. gedit shows this message: Could not open the file sftp://remote-machine/some/file. gedit cannot handle sftp: locations. Note that: /some/file exists on remote-machine. I can SSH normally from remote-machine to local-machine using my SSH key without any problems! I can run the command DISPLAY=:0.0 gedit sftp://remote-machine/some/file in a terminal on local-machine and gedit opens the file on remote-machine without any problems - but the terminal in which I executed the command is running in DISPLAY :0 (really, it's gnome-terminal). I also tried -t option of SSH client (to force pseudo-tty allocation) but it didn't work. If I try to run DISPLAY=:0.0 gedit sftp://remote-machine/some/file in local-machine but under a tty (for example in tty1, by pressing <Ctrl>+<Alt>+<F1>) it doesn't not work - I get the same error when running from remote-machine. I found that if I pass the environment variable DBUS_SESSION_BUS_ADDRESS with a correct value, it works! So, if I do something like that: myuser@local-machine:~$ env | grep DBUS_SESSION_BUS_ADDRESS > env.txt myuser@local-machine:~$ scp env.txt remote-machine: and then: myuser@remote-machine:~$ ssh local-machine "DISPLAY=:0.0 $(cat env.txt) gedit sftp://remote-machine/some/file" it works! The problem is that I'm not on local-machine so I can't get the correct value for this env variable. Is there any other way to make this work?

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• Deleted the .AppleDouble files inside my Time Machine backups - are they still OK?

  - by Jon M

  My Ubuntu server is set up to emulate a TimeCapsule (after a very long weekend following the instructions here, here and here). My macbook pro has been backing up happily to it for a month or so now, and all seems well. The other day I was tidying up the extraneous files from my music collection on the server, got a bit loose with the find command... and ended up deleting all the .AppleDouble files underneath '/', which included the Time Machine folder. Now, Time Machine still appears to work fine, it backs up regularly, I can look through all the previous versions of my files, and they seem to restore without trouble. My question is: by deleting the .AppleDouble files, have I actually broken anything? Is the TM data still good, or should I trash it and start fresh (i.e. with a new 'day 0' full backup)?

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• How can I route packets from one application to a virtual machine in windows 7?

  - by user836045

  I am trying to test an application running in windows 7, and I would like to send the packets it generates to a server VM (I am using virtualbox) on the local machine which will act as a simulation for when packets will be really sent over the internet to a distant server. I need to check for correctness of the packets in certain situations. Is there a way on windows to take packets produced by an application and instead of passing it to my router, pass it along to another process, i.e. my virtual machine. I'd prefer not to change any of the code on my application and would rather find an outside solution. Is there such a solution for windows 7?

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• Revolutionary brand powder packing machine price from affecting marketplace boom and put on uniform in addition to a lengthy service life

  - by user74606

  In mining in stone crushing, our machinery company's encounter becomes much more apparent. As a consequence of production capacity in between 600~800t/h of mining stone crusher, stone is mine Mobile Cone Crushing Plant Price 25~40 times, effectively solved the initially mining stone crusher operation because of low yield prices, no upkeep problems. Full chunk of mining stone crusher. Maximum particle size for crushing 1000x1200mm, an effective answer for the original side is mine stone provide, storing significant chunks of stone can not use complications in mines. Completed goods granularity is modest, only 2~15mm, an effective option for the original mine stone size, generally blocking chute production was an issue even the grinding machine. Two types of material mixed great uniformity, desulfurization of mining stone by adding weight considerably. Present quantity added is often reached 60%, effectively minimizing the cost of raw supplies. Electrical energy consumption has fallen. Dropped 1~2KWh/t tons of mining stone electrical energy consumption, annual electricity savings of one hundred,000 yuan. Efficient labor intensity of workers and also the atmosphere. Due to mine stone powder packing machine price a high degree of automation, with out human make contact with supplies, workers working circumstances enhanced significantly. Positive aspects, and along with mine for stone crushing, CS series cone Crusher has the following efficiency traits. CS series cone Crusher Chamber is divided into 3 unique designs, the user is usually chosen in accordance with the scenario on site crushing efficiency is high, uniform item size, grain shape, rolling mortar wall friction and put on uniform in addition to a extended service life of crushing cavity-. CS series cone Crusher utilizes a one of a kind dust-proof seal, sealing dependable, properly extend the service life of the lubricant replacement cycle and parts. CS series Sprial Sand washer price manufacture of important components to choose unique materials. Each and every stroke left rolling mortar wall of broken cone distances, by permitting a lot more products into the crushing cavity, as well as the formation of big discharge volume, speed of supplies by way of the crushing Chamber. This machine makes use of the principle of crushing cavity, also as unique laminated crushing, particle fragmentation, so that the completed product drastically improved the proportions of a cube, needle-shaped stones to lower particle levels extra evenly.

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• tradeoffs of iSCSI vs. AFP when using Time Machine with a NAS?

  - by ajit.george

  I'm setting up a home NAS device (Synology DS409) that I'm planning to use for Time Machine backups (amongst other things). What are the tradeoffs between using iSCSI or AFP to mount the backup volume? The Synology wiki suggests that iSCSI is better if the Mac will be frequently disconnected from the network or sleeping, from the point of view of the volume automatically remounting. What about filesystem consistency? Given that unplugging a USB drive without properly unmounting it often requires the Time Machine volume to be repaired, would iSCSI have the same issues? Thanks in advance.

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• tradeoffs of iSCSI vs. AFP when using Time Machine with a NAS?

  - by Ajit George

  I'm setting up a home NAS device (Synology DS409) that I'm planning to use for Time Machine backups (amongst other things). What are the tradeoffs between using iSCSI or AFP to mount the backup volume? The Synology wiki suggests that iSCSI is better if the Mac will be frequently disconnected from the network or sleeping, from the point of view of the volume automatically remounting. What about filesystem consistency? Given that unplugging a USB drive without properly unmounting it often requires the Time Machine volume to be repaired, would iSCSI have the same issues?

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• Is there a time machine equivalent for windows that can back up network files?

  - by Jim Thio

  This question is similar to Does an equivalent of Time Machine exist for Windows?, with one difference: The files I want to back up are on a network drive. The computer on that network drive is running Windows XP. I want to back up data on Windows 7. How would I do so? I'd like something similar to Mac OS X' time machine. So copy of data every hour, day, week. Then thinning out, data gets deleted automatically as time goes by. For example, the data for last day is kept as hourly snapshots. For last week, as daily snapshots every day. And for last month as weekly snapshots. How can I achieve this?

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• Extensive use of HDD after VmWare Player virtual machine is closed.

  - by Bobrovsky

  Each time I close virtual machine in VmWare Player I see extensive use of HDD in my system. Basically, whole system becomes unresponsive for about 5-7 minutes. Host system is Windows 7 Utimate x64 SP1 with 6 GB of memory, i3-M350 processor. Virtual machine is Windows XP SP3 x86 (2GB of memory allocated for VM). What can be the cause and what can I do to solve the issue? UPDATE: I am not shutting down the VM, I just close Player window and VM saves it's state. System becomes unresponsive right after VM have saved it state (as indicated by Player) and Player itself have closed.

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• How should I fix problems with file permissions while restoring from Time Machine?

  - by Andrew Grimm

  While restoring files from a Time Machine backup, I got the error message "The operation can’t be completed because you don’t have permission to access some of the items." because of problems with files in one folder. What's the safest way to deal with this? The folder in question has permissions like: Andrew-Grimms-MacBook-Pro:kmer agrimm$ pwd /Volumes/Time Machine Backups/Backups.backupdb/Andrew Grimm’s MacBook Pro/2010-12-09-224309/Macintosh HD/Users/agrimm/ruby/kmer Andrew-Grimms-MacBook-Pro:kmer agrimm$ ls -ltra total 6156896 drwxrwxrwx@ 19 agrimm staff 680 18 Jan 2008 Saccharomyces_cerevisiae -r--------@ 1 agrimm staff 60221852 4 Aug 2009 hs_ref_GRCh37_chrY.fa -r--------@ 1 agrimm staff 157488804 4 Aug 2009 hs_ref_GRCh37_chrX.fa (snip a few files) -r--------@ 1 agrimm staff 676063 27 Oct 2009 NC_001143.fna -rw-r--r--@ 1 agrimm staff 6148 23 Mar 2010 .DS_Store drwxr-xr-x@ 3 agrimm staff 1530 23 Mar 2010 . drwxr-xr-x@ 30 agrimm staff 1054 20 Nov 14:43 .. Is it ok to do sudo chmod, or is there a safer approach? Background: Files within the original folder on my computer also had weird permissions - I suspect I may have used sudo to copy some files from a thumbdrive onto my computer.

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• How small (spec wise) can a virtual machine be and still boot up and run some sort of OS?

  - by IllvilJa

  One of the advantages with virtual machines is that you can be very flexible with their sizes. If the host system permits it, you can have a very large virtual machine with a lot of virtual RAM and disk. Also, you can decide to go the other way around, to give the virtual machine a very modest amount of RAM and disk and then choose and configure the OS appropriately. The question is, how small virtual machines have people managed to setup (and get to both boot up and to run)? Virtual machines doing something usuful is preferable, even if I know "useful" in this context is awfully subjective, but laboratory-cases with a configuration stripped beyond common sense could be intresting as well, just to see what people manage to boot and run. Quite open ended question and quite academic, but think of it: an extremely small VM (which still does something useful) takes very little memory and disk and can be quite quickly saved to and restored from disk. If it's also gentle on CPU resources, one might consider having a huge number of such VMs up and running on a host. (Imagine a VM running just an old Commodore 64 or Commodore Amiga in it. Ok, way wrong CPU architecture for modern Virtualization software running on a x86-based PC but still an interesting thought. You could have quite a few such small VMs running on a modern PC.)

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• What format have project managers used for defining features/requirements? [on hold]

  - by Jon

  At the company that I currently work at, Word documents are passed around which contain the features/requirements for the software we write, and those Word docs contain mock-ups (there aren't any use cases that I've seen). I'm just curious what project managers use at other companies. Do some skip making the requirements documents altogether and go straight for a ticket-tracker such as JIRA? What seems to work the best? Thanks, -Jon

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• Formalizing a requirements spec written in narrative English

  - by ProfK

  I have a fairly technical functionality requirements spec, expressed in English prose, produced by my project manager. It is structured as a collection of UI tabs, where the requirements for each tab are expressed as a lit of UI fields and a list of business rules for the tab. Most business rules are for UI fields on a tab, e.g: a) Must be alphanumeric, max length 20. b) Must be a dropdown, with values from table x. c) Is mandatory. d) Is mandatory under certain conditions, e.g. another field is just populated, or has a specific value. Then other business rules get a little more complex. The spec is for a job application, so the central business object (table) is the Applicant, and we have several other tables with one-to-many relationships with applicant, such as Degree, HighSchool, PreviousEmployer, Diploma, etc. e) One such complex rule says a status field can only be assigned a certain value if a many-side record exists in at least one of the many-side tables. E.g. the Applicant has at least one HighSchool or at least one Diploma record. I am looking for advice on how to codify these requirements into a more structured specification defined in terms of tables, fields, and relationships, especially for the conditional rules for fields and for the presence of related records. Any suggestions and advice will be most welcome, but I would be overjoyed if i could find an already defined system or structure for expressing things like this.

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• how do I write a functional specification quickly and efficiently

  - by giddy

  So I just read some fabulous articles by Joel on specs here. (Was written in 2000!!) I read all 4 parts, but Im looking for some methodical approaches to writing my specs. Im the only lonely dev, working on this fairly complicated app (or family of apps) for a very well known finance company. I've never made something this serious, I started out writing something like a bad spec, an overview of some sorts, and it has wasted a LOT of my time. Ive also made 3 mockup-kinda-thingies for my client so I have a good understanding of what they want. Also released a preview (a throw away working app with the most basic workflow), and Ive only written and tested some of the very core/base systems. I think the mistake Ive been making so far is not writing a detailed spec, so Im getting to it now. So the whole thing comprises of An MVC website (for admins & data viewing) 2 Silverlight modules (For 2 specific tasks) 1 Desktop Application Im totally short on time, resources and need to get this done quick, also, need to make sure these guys read it up equally quick and painlessly. So how do I go about it, Im looking for any tips, any real world stuff, how do you guys usually do it? Do you make a mock screenie of every dialog/form/page? Im thinking of making a dummy asp.net web forms project, then filling in html files in folders and making it look like my mvc url structure. Then having a section in the spec for the website and write up a page for every URL Ive got with a screenie. For my win forms app, Ive made somewhat of a demo Win Form project, would I then put in a dialog or stucture everything as I would in the real app and then screen shot it?

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• Estimating time for planning and technical design using Evidence Based Scheduling

  - by Turgs

  I'm at the beginning of a development project in a large organization. The Functional Requirements are currently being worked out and documented with our business stakeholders by our Enterprise Design department. I'm required to produce Technical Design Documents and manage the team to actually build the solution. I'm wanting to try Evidence Based Scheduling, but as I understand, part of that is breaking the job down into small tasks that are less than 14 hours in duration, which requires me to have already done the Technical Design. Therefore, can Evidence Based Scheduling only be used after the Technical Design has been done? How do you then plan and estimate the time it may take to come up with the Technical Design?

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• Codifying a natural language requirements spec

  - by ProfK

  I have a fairly technical functionality requirements spec, expressed in English prose, produced by my project manager. It is structured as a collection of UI tabs, where the requirements for each tab are expressed as a lit of UI fields and a list of business rules for the tab. Most business rules are for UI fields on a tab, e.g: a) Must be alphanumeric, max length 20. b) Must be a dropdown, with values from table x. c) Is mandatory. d) Is mandatory under certain conditions, e.g. another field is just populated, or has a specific value. Then other business rules get a little more complex. The spec is for a job application, so the central business object (table) is the Applicant, and we have several other tables with one-to-many relationships with applicant, such as Degree, HighSchool, PreviousEmployer, Diploma, etc. e) One such complex rule says a status field can only be assigned a certain value if a many-side record exists in at least one of the many-side tables. E.g. the Applicant has at least one HighSchool or at least one Diploma record. I am looking for advice on how to codify these requirements into a more structured specification defined in terms of tables, fields, and relationships, especially for the conditional rules for fields and for the presence of related records. Any suggestions and advice will be most welcome, but I would be overjoyed if i could find an already defined system or structure for expressing things like this.

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• How can a non-technical person learn to write a spec for small projects?

  - by Joseph Turian

  How can a non-technical person learn to write specs for small projects? A friend of mine is trying to outsource some development on a statistics project. In particular, he does a lot of work in excel, and wants to outsource the creation of scripts to do what he now does by hand. However, my friend is extremely non-technical. He is poor at writing technical specs. When he does write a spec, it is written the way you would describe doing something in excel (go to this cell and then copy the value to that cell). It is also overly verbose, and does examples several times. I'm not sure if he properly describes corner cases. The first project he outsourced was a failure. I think he overdescribed some details, but underdescribed corner cases. That and/or the coder he hired didn't think through the corner cases and ask appropriate questions. I'm not sure. I got on IM with him and it took me half an hour to dig out a description that should have taken five minutes or less to describe. I wrote the scripts for him at the end, but didn't examine why his process with the coder failed. He has asked me for help. However, I refuse to get involved, because taking his spec and translating it into clear requirements is 10x more work than executing on a clearly written spec. What is the right way for him to learn? Are there resources he could use? Are there ways he can learn from small, low-pressure practice projects with coders? Most of his scripts are statistical and data processing oriented. e.g. take this column and run an average over it. Remove these rows under these conditions. So the challenge is different than spec'ing a web app.

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• How can a non-technical person can learn to write a spec for small projects?

  - by Joseph Turian

  How can a non-technical person learn to write specs for small projects? A friend of mine is trying to outsource some development on a statistics project. In particular, he does a lot of work in excel, and wants to outsource the creation of scripts to do what he now does by hand. However, my friend is extremely non-technical. He is poor at writing technical specs. When he does write a spec, it is written the way you would describe doing something in excel (go to this cell and then copy the value to that cell). It is also overly verbose, and does examples several times. I'm not sure if he properly describes corner cases. The first project he outsourced was a failure. I think he overdescribed some details, but underdescribed corner cases. That and/or the coder he hired didn't think through the corner cases and ask appropriate questions. I'm not sure. I got on IM with him and it took me half an hour to dig out a description that should have taken five minutes or less to describe. I wrote the scripts for him at the end, but didn't examine why his process with the coder failed. He has asked me for help. However, I refuse to get involved, because taking his spec and translating it into clear requirements is 10x more work than executing on a clearly written spec. What is the right way for him to learn? Are there resources he could use? Are there ways he can learn from small, low-pressure practice projects with coders? [edit: Most of his scripts are statistical and data processing oriented. e.g. take this column and run an average over it. Remove these rows under these conditions. So the challenge is different than spec'ing a web app.]

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• The value of an updated specification

  - by Mr. Jefferson

  I'm at the tail end of a large project (around 5 months of my time, 60,000 lines of code) on which I was the only developer. The specification documents for the project were designed well early on, but as always happens during development, some things have changed. For example: Bugs were discovered and fixed in ways that don't correspond well with the spec Additional needs were discovered and dealt with We found areas where the spec hadn't thought far enough ahead and had to change some implementation Etc. Through all this, the spec was not kept updated, because we were lean on resources (I know that's a questionable excuse). I'm hoping to get the spec updated soon when we have time, but it's a matter of convincing management to spend the effort. I believe it's a good idea, but I need some good reasoning; I can't speak from very much experience because I'm only a year and a half out of school. So here are my questions: What value is there in keeping an updated spec? How often should the spec be updated? With every change made that might affect it, just at the end of development, or something in between? EDIT to clarify: this project was internal, so no external client was involved. It's our product.

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• Leadership does not see value in standard process for machine configuration and new developer orientation

  - by opensourcechris

  About 3 months ago our lead web developer and designer(same person) left the company, greener pastures was the reason for leaving. Good for them I say. My problem is that his department was completely undocumented. Things have been tough since the lead left, there is a lot of knowledge both theoretical knowledge we use to quote new projects and technical/implementation knowledge of our existing products that we have lost as a result of his departure. My normal role is as a product manager (for our products themselves) and as a business analyst for some of our project based consulting work. I've taught myself to code over the past year and in an effort to continue moving forward I've taken on the task of setting my laptop up as a development machine with hopes of implementing some of the easier feature requests and fixing some of the no brainer bugs that get submitted into our ticketing system. But, no one knows how to take a fresh Windows machine and configure it to work seamlessly with our production apps. I have requested my boss, who is still in contact with the developer who left, ask them to document and create a process to onboard a new developer, software installation, required packages, process to deploy to the productions application servers, etc. None of this exists, and I'm spinning my wheels trying to get my computer working as a functional development machine. But she does not seem to understand the need for such a process to exist. Apparently the new developer who replaced the one who left has been using a machine that was pre-configured for our environment, so even the new developer could not set up a new machine if we added another developer. My question is two part: Am I wrong in assuming a process to on-board and configure a new computer to be part of our development eco-system should exist? Am I being a whinny baby and should I figure the process out and create a document on my own?

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• Machine Learning Web Jobs

  - by gprime

  I always see job positions for web companies for Machine Learning. For example facebook always has this type of job opening. Anyways, i was curious as to what exactly do web companies use machine learning for. Is it for giving people ads based on their site surfing history or something like that. I want to know because i have some experience with machine learning and it sounds like a fun thing to work on as long as i can convince the business guys to go ahead with it.

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• how do I write a functional spec quickly and efficiently

  - by giddy

  So I just read some fabulous articles by Joel on specs here. (Was written in 2000!!) I read all 4 parts, but Im looking for some methodical approaches to writing my specs. Im the only lonely dev, working on this fairly complicated app (or family of apps) for a very well known finance company. I've never made something this serious, I started out writing something like a bad spec, an overview of some sorts, and it has wasted a LOT of my time. Ive also made 3 mockup-kinda-thingies for my client so I have a good understanding of what they want. Also released a preview (a throw away working app with the most basic workflow), and Ive only written and tested some of the very core/base systems. I think the mistake Ive been making so far is not writing a detailed spec, so Im getting to it now. So the whole thing comprises of An MVC website (for admins & data viewing) 2 Silverlight modules (For 2 specific tasks) 1 Desktop Application Im totally short on time, resources and need to get this done quick, also, need to make sure these guys read it up equally quick and painlessly. So how do I go about it, Im looking for any tips, any real world stuff, how do you guys usually do it? Do you make a mock screenie of every dialog/form/page? Im thinking of making a dummy asp.net web forms project, then filling in html files in folders and making it look like my mvc url structure. Then having a section in the spec for the website and write up a page for every URL Ive got with a screenie. For my win forms app, Ive made somewhat of a demo Win Form project, would I then put in a dialog or stucture everything as I would in the real app and then screen shot it?

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• Experience of Python's “PEP-302 New Import Hooks”

  - by Koichi Sasada

  I'm one of the developers of Ruby (CRuby). We are working on Ruby 2.0 release (planned to release 2012/Feb). Python has "PEP302: New Import Hooks" (2003): This PEP proposes to add a new set of import hooks that offer better customization of the Python import mechanism. Contrary to the current import hook, a new-style hook can be injected into the existing scheme, allowing for a finer grained control of how modules are found and how they are loaded. We are considering introducing a feature similar to PEP302 into Ruby 2.0 (CRuby 2.0). I want to make a proposal which can persuade Matz. Currently, CRuby can load scripts from only file systems in a standard way. If you have any experience or consideration about PEP 302, please share. Example: It's a great spec. No need to change it. It is almost good, but it has this problem... If I could go back to 2003, then I would change the spec to... I'm sorry if such a question is not suitable for here. I posted here because I'm not sure that I can ask this question at python-dev (of course, the list is not for cruby development). This post is moved from http://stackoverflow.com/questions/11188229/experience-of-pythons-pep-302-new-import-hooks.

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• bug: deviation from requirements vs deviation from expectations

  - by user970696

  I am not clear on this one. No matter the terminology, in the end the software fault/bug causes (according to a lot of sources): Deviation from requirements Devation from expectations But if the expectations are not in requirements, then stakeholder could see a bug everywhere as he expected it to be like this or that..So how can I really know? I did read that specification can miss things and then of course its expected but not specified (by mistake).

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• When to skip solving the general problem and settling for the specific problem?

  - by Peter Smith

  I've been working hard on trying to develop a general solution to my problem, but I cannot seem to formulate a proper algorithm for it, at least one that doesn't take a ton of inaccurate grunt work building a lookup table. I have a solution already for the specific requirement, but it requires the software's configuration to be changed every time the software is loaded with a different geographic area's datasets. So is it better to be finished and move on for now, or to keep attempting to solve the general problem knowing that the specific problems will keep popping up?

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