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  • Server hang - data loss on reboot, post mortem analysis

    - by rovangju
    A development server I'm responsible for (ext3 on raid 5 w/Debian Squeeze) froze up over the weekend and I was forced to reset it, as in unresponsive from KVM/physical keyboard access, no eth devices responding, etc. Not even the backup process ran (Figures, the one time I don't check for confirmation) So after the reset, it turns out that every trace of disk IO activity that should have happened for a period of ~24H is completely gone. The log files have a big gap in the dates and times. As if the writes were never committed to disk, no processes seemed to have run. Luckily it was a weekend and nothing of value would have been lost and I don't suspect a hack. What can I do in post mortem to this event - to prevent it from ever happening again? I've seen this happen before on a completely different machine running FreeBSD. I am rounding up the disk checking tools right now - but there must be more going on! Mount options: /dev/sda1 on / type ext3 (rw,errors=remount-ro) Kernel: Linux dev 2.6.32-5-686-bigmem Disk/Inodes: 13%/3%

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  • Forensic Analysis of the OOM-Killer

    - by Oddthinking
    Ubuntu's Out-Of-Memory Killer wreaked havoc on my server, quietly assassinating my applications, sendmail, apache and others. I've managed to learn what the OOM Killer is, and about its "badness" rules. While my machine is small, my applications are even smaller, and typically only half of my physical memory is in use, let alone swap-space, so I was surprised. I am trying to work out the culprit, but I don't know how to read the OOM-Killer logs. Can anyone please point me to a tutorial on how to read the data in the logs (what are ve, free and gen?), or help me parse these logs? Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 1, exc 2326 0 goal 2326 0... Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): task ebb0c6f0, thg d33a1b00, sig 1 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 1, exc 2326 0 red 61795 745 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 2, exc 122 0 goal 383 0... Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): task ebb0c6f0, thg d33a1b00, sig 1 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 2, exc 383 0 red 61795 745 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): task ebb0c6f0, thg d33a1b00, sig 2 Apr 20 20:03:27 EL135 kernel: OOM killed process watchdog (pid=14490, ve=13516) exited, free=43104 gen=24501. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=4457, ve=13516) exited, free=43104 gen=24502. Apr 20 20:03:27 EL135 kernel: OOM killed process ntpd (pid=10816, ve=13516) exited, free=43104 gen=24503. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=27401, ve=13516) exited, free=43104 gen=24504. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=29009, ve=13516) exited, free=43104 gen=24505. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=10557, ve=13516) exited, free=49552 gen=24506. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=24983, ve=13516) exited, free=53117 gen=24507. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=29129, ve=13516) exited, free=68493 gen=24508. Apr 20 20:03:27 EL135 kernel: OOM killed process sendmail-mta (pid=941, ve=13516) exited, free=68803 gen=24509. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=12418, ve=13516) exited, free=69330 gen=24510. Apr 20 20:03:27 EL135 kernel: OOM killed process python (pid=22953, ve=13516) exited, free=72275 gen=24511. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=6624, ve=13516) exited, free=76398 gen=24512. Apr 20 20:03:27 EL135 kernel: OOM killed process python (pid=23317, ve=13516) exited, free=94285 gen=24513. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=29030, ve=13516) exited, free=95339 gen=24514. Apr 20 20:03:28 EL135 kernel: OOM killed process apache2 (pid=20583, ve=13516) exited, free=101663 gen=24515. Apr 20 20:03:28 EL135 kernel: OOM killed process logger (pid=12894, ve=13516) exited, free=101694 gen=24516. Apr 20 20:03:28 EL135 kernel: OOM killed process bash (pid=21119, ve=13516) exited, free=101849 gen=24517. Apr 20 20:03:28 EL135 kernel: OOM killed process atd (pid=991, ve=13516) exited, free=101880 gen=24518. Apr 20 20:03:28 EL135 kernel: OOM killed process apache2 (pid=14649, ve=13516) exited, free=102748 gen=24519. Apr 20 20:03:28 EL135 kernel: OOM killed process grep (pid=21375, ve=13516) exited, free=132167 gen=24520. Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 4, exc 4215 0 goal 4826 0... Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): task ede29370, thg df98b880, sig 1 Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 4, exc 4826 0 red 189481 331 Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): task ede29370, thg df98b880, sig 2 Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 5, exc 3564 0 goal 3564 0... Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): task c6c90110, thg cdb1a100, sig 1 Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 5, exc 3564 0 red 189481 331 Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): task c6c90110, thg cdb1a100, sig 2 Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 6, exc 8071 0 goal 8071 0... Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): task d7294050, thg c03f42c0, sig 1 Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 6, exc 8071 0 red 189481 331 Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): task d7294050, thg c03f42c0, sig 2 Watchdog is a watchdog task, that was idle; nothing in the logs to suggest it had done anything for days. Its job is to restart one of the applications if it dies, so a bit ironic that it is the first to get killed. Tail was monitoring a few logs files. Unlikely to be consuming memory madly. The apache web-server only serves pages to a little old lady who only uses it to get to church on Sundays a couple of developers who were in bed asleep, and hadn't visited a page on the site for a few weeks. The only traffic it might have had is from the port-scanners; all the content is password-protected and not linked from anywhere, so no spiders are interested. Python is running two separate custom applications. Nothing in the logs to suggest they weren't humming along as normal. One of them was a relatively recent implementation, which makes suspect #1. It doesn't have any data-structures of any significance, and normally uses only about 8% of the total physical RAW. It hasn't misbehaved since. The grep is suspect #2, and the one I want to be guilty, because it was a once-off command. The command (which piped the output of a grep -r to another grep) had been started at least 30 minutes earlier, and the fact it was still running is suspicious. However, I wouldn't have thought grep would ever use a significant amount of memory. It took a while for the OOM killer to get to it, which suggests it wasn't going mad, but the OOM killer stopped once it was killed, suggesting it may have been a memory-hog that finally satisfied the OOM killer's blood-lust.

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  • Confusion about TCP packet analysis terms

    - by Berkay
    I'm analyzing our network and have some confusion about the terms: this is the 2-packet output from source to destination. from these i have to get some features as describe, pls make me clear... packets with at least a bytes of TCP data payload: it seems tcp.len0; The minimum segment size (confusion is headers are included or or not) The average segment size observed during the lifetime of the connection, the definition: is calculated as the value reported in the actual data bytes divided by the actual data pkts reported. Total bytes in IP packets, should be ip_len value. Total bytes in (Ethernet) The total number of bytes sent probably related to frame.len and frame.cap_len these two terms are describes as, also make me clear about these two terms. frame.cap_len: Frame length stored into the capture file frame.len: Frame length on the wire

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  • Windows Disk I/O Analysis

    - by Jonathon
    It appears that we are having a problem with the disk i/o speed on our Windows 2003 Enterprise Edition server (64-bit). As we were initializing a database that created two 1G tablespaces on 3 different machines, it became obvious that the two smaller machines (each 32-bit Windows 2003 Standard Edition with less RAM) killed the larger machine when creating the files. The larger machine took 10x as long to create the tablespaces than did the other machines. Now, I am left wondering how that could be. What programs or scripts would you guys recommend for tracking down the I/O problem? I think the issue may be with the controller card (all boxes are hardware RAID 10, but have different controller cards), but I would like to check the actual disk I/O speed as well, so I have some hard numbers to work with. Any help would be appreciated.

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  • Ubuntu 12.04 crash analysis - strange binary data on all open files at the moment of crash

    - by lanbo
    A couple of hours ago we got a system crash on Ubuntu 12.04. We checked all the log files and there is nothing suspicious to blame to. Last stuff that was logged was some dovecot activity. There are no kernel panic messages. Nothing. It is a new server (new hardware) we are testing before production. And because it is new hard, I'm suspicious the problem may be due to some faulty hardware. We already run memtester with no problem detected. I'll be happy to hear from other hardware testing tools (the machine has SSD). Anyway, the thing I wanted to ask you is a different one. The strange thing is on every open file at the moment of the crash we found the next sequence of symbols was written into them: "@^@^@^@^@^@^@...". For example, on the syslog log file we got: Apr 16 15:53:56 odyssey dovecot: pop3-login: Aborted login (auth failed, 1 attempts): user=<info>, method=PLAIN, rip=46.29.255.73, lip=5.9.58.177 ^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^ [these continues for about 1000 chars...] ^@^@^@^@Apr 16 15:55:12 odyssey kernel: imklog 5.8.6, log source = /proc/kmsg started. We got all these symbols in all open files. These include: syslog, mail.log, kern.log, ... But also on some logs that are output by php scripts run in CRONs from user accounts (not root). So, any idea why all open files got these characters written during the crash? This is pretty bad since the crash corrupted many files (we don't even know which other ones may be affected). We are suspicious that all open files (in write mode maybe) at the moment of the crash got all these symbols inserted. Why is that? BTW [in case it helps], the system automatically rebooted after the crash but Apache did not start. There were not traces in /var/apache2/*log why apache did not start. After running a "service apache2 start" it started with no problems. Also, we rebooted the machine manually and Apache also started on reboot. But it did not start after the crash and no errors were reported. Thanks guys!

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  • MySQL Non Index Queries Analysis

    - by Markii
    I'm using the log queries not using index but it logs all that use indexes but just more advanced or using IFs. Is there a parser or a program out there that can analyze the log and give me a literal output of saying "table.column should be a index" Thanks

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  • Algorithm Analysis tool for java

    - by Mansoor
    I am looking for an algorithm analysis tool for java that can calculate Big 0 of a function. Ideal I would like to make it part of my build process, along side of my other code metrics tool. Even after searching on google I am unable to find any opensource of commercial tool. Any suggestion would be welcome Thanks

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  • Error: Cannot find .net assembly during FxCop analysis

    - by Draco
    I'm running FxCop from MSBuild and during the analysis it throws an error stating that it could not find the System.XML assembly and that I need to specify the location using the /directory parameter, which I then did but it didn't work. Any idea what I should do? I am running it on projects built on .Net 4.0

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  • Data Mining - Predictive Analysis

    - by IMHO
    We are looking at acquiring Data Mining software to primarily run predictive analysis processes. How does SQL Server Data Mining solution compares to other solutions like SPSS from IBM? Since SQL Server DM is included in SQL Server Enterprise license - what would be the justification to spend extra couple 100K to buy separate software just to do DM?

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  • log analysis for rails

    - by deepak
    i have a rails app which makes heavy use of activeresource and httparty to make api calls. Is there any library/extension to log the requests and parse them, so that log analysis becomes easier and automated. RailsLogAnalyser is good but what about extra calls, what are the conventions? Something like a opensource/self-hosted alternative to newrelic, but with extensions to plug in your own logging.

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  • Workflow for statistical analysis and report writing

    - by ws
    Does anyone have any wisdom on workflows for data analysis related to custom report writing? The use-case is basically this: Client commissions a report that uses data analysis, e.g. a population estimate and related maps for a water district. The analyst downloads some data, munges the data and saves the result (e.g. adding a column for population per unit, or subsetting the data based on district boundaries). The analyst analyzes the data created in (2), gets close to her goal, but sees that needs more data and so goes back to (1). Rinse repeat until the tables and graphics meet QA/QC and satisfy the client. Write report incorporating tables and graphics. Next year, the happy client comes back and wants an update. This should be as simple as updating the upstream data by a new download (e.g. get the building permits from the last year), and pressing a "RECALCULATE" button, unless specifications change. At the moment, I just start a directory and ad-hoc it the best I can. I would like a more systematic approach, so I am hoping someone has figured this out... I use a mix of spreadsheets, SQL, ARCGIS, R, and Unix tools. Thanks! PS: Below is a basic Makefile that checks for dependencies on various intermediate datasets (w/ ".RData" suffix) and scripts (".R" suffix). Make uses timestamps to check dependencies, so if you 'touch ss07por.csv', it will see that this file is newer than all the files / targets that depend on it, and execute the given scripts in order to update them accordingly. This is still a work in progress, including a step for putting into SQL database, and a step for a templating language like sweave. Note that Make relies on tabs in its syntax, so read the manual before cutting and pasting. Enjoy and give feedback! http://www.gnu.org/software/make/manual/html%5Fnode/index.html#Top R=/home/wsprague/R-2.9.2/bin/R persondata.RData : ImportData.R ../../DATA/ss07por.csv Functions.R $R --slave -f ImportData.R persondata.Munged.RData : MungeData.R persondata.RData Functions.R $R --slave -f MungeData.R report.txt: TabulateAndGraph.R persondata.Munged.RData Functions.R $R --slave -f TabulateAndGraph.R report.txt

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  • Algorithm for sentence analysis and tokenization

    - by Andrea Nagar
    I need to analyze a document and compile statistics as to how many times each a sequence of words is used (so the analysis is not on single words but of batch of recurring words). I read that compression algorithms do something similar to what I want - creating dictionaries of blocks of text with a piece of information reporting its frequency. It should be something similar to http://www.codeproject.com/KB/recipes/Patterns.aspx Do you have anything written in C#?

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  • Static code analysis tools

    - by Anil Namde
    Whether JavaSript, C# or C++ main problem i face while reading the code is which function is called by which function. This problem is big when dealing with BIG code. Is there any static code analysis tool/technique/plugins using which a graphical representation of the code can be generated(something like below) so that reading/analyzing code becomes easy? .... --outerFuntion() ---innerFunction() ----innerFunction2() --outerFunction2() .... Please provide your inputs/opinions on this Thanks all,

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  • C# code analysis - VS 2005

    - by anon
    I have a C# user control project which causes intermittent .NET run time error, a generic error, and wondering if there is any code analysis tool that I can point at my .sln file which would tell me what may be causing my error

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  • Programmaticaly finding the Landau notation (Big O or Theta notation) of an algorithm?

    - by Julien L
    I'm used to search for the Landau (Big O, Theta...) notation of my algorithms by hand to make sure they are as optimized as they can be, but when the functions are getting really big and complex, it's taking way too much time to do it by hand. it's also prone to human errors. I spent some time on Codility (coding/algo exercises), and noticed they will give you the Landau notation for your submitted solution (both in Time and Memory usage). I was wondering how they do that... How would you do it? Is there another way besides Lexical Analysis or parsing of the code? PS: This question concerns mainly PHP and or JavaScript, but I'm opened to any language and theory.

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  • Is catching general exceptions really a bad thing?

    - by Bob Horn
    I typically agree with most code analysis warnings, and I try to adhere to them. However, I'm having a harder time with this one: CA1031: Do not catch general exception types I understand the rationale for this rule. But, in practice, if I want to take the same action regardless of the exception thrown, why would I handle each one specifically? Furthermore, if I handle specific exceptions, what if the code I'm calling changes to throw a new exception in the future? Now I have to change my code to handle that new exception. Whereas if I simply caught Exception my code doesn't have to change. For example, if Foo calls Bar, and Foo needs to stop processing regardless of the type of exception thrown by Bar, is there any advantage in being specific about the type of exception I'm catching?

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  • Why use sealed instead of static on a class?

    - by sq33G
    Our system has several utility classes. Some people on our team use (A) a class with all-static methods and a private constructor. Others use (B) a class with all-static methods (these the juniors). On code analysis, (A) and (B) raise warning CA1052, which recommends marking the class as sealed. Included in the MSDN documentation there is the following advice: If you are targeting .NET Framework 2.0 or earlier, a better approach is to mark the type as static. Why does this make any sense? I would have thought the opposite; AFAIK, previous to 2.0 there was no way to mark a class as static.

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  • Development methodology for single web developer?

    - by CaseTA
    I'm a web developer who mostly works with the LAMP stack when it comes to my own projects. Most of the time I just start coding on a project and fixing bugs and adding features as I go along. Often I'll try to use an existing solution such as Wordpress or Drupal. Now that I'm thinking of creating my own web application with businesses as the target group, I feel there's a need for proper analysis and design. Something lightweight for a one person project and still solid enough to handle requirements, user interfaces, security, etc. If you could recommend methodologies and literature I would be grateful.

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  • a question on using Microsoft Excel to do data analysis

    - by Gemma
    Hello everyone there, Me and my mates have been given an Excel spreasheet,which contains the data of the Census report. The column here corresponds to "Year" (from 2000-2010),the row means "City/Town",the cell is simply the population of a town at a particular year. We are up to doing some analysis like “what town had its first population gain in 10 years?” etc.My question is just about can we do this in Excel,or do we need to export the data to other database(SQL) then do the programming? Thanks in advance.

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  • Best ORM, Simple data Structures, Strong Query analysis.

    - by sayth
    What is the best ORM db combination for simple data structures. That is data that contains names as identifiers and locations, but whose main interaction will be numerical data for times(sports durations), and currency related data. I initially want to create a sports data base that will take names and statistics. Secondarily I plan to start into an investment and stock analysis db. Which ORM suits storing many numerical types and have strong query functions? I really am not biased to db engine (most likely use sqlite or mongo) so any suggestions to best network less db server to suit said ORM appreciated.

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  • skeleton in MATLAB

    - by AZIRAR
    The objective of skeletonization is to represent a binary image with a minimum set of pixels. The skeleton must account for geometrical properties of the form and retain associative relationships. My question here is how can i get a skeleton from binary image ?

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