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  • Python comparing string against several regular expressions

    - by maerics
    I'm pretty experienced with Perl and Ruby but new to Python so I'm hoping someone can show me the Pythonic way to accomplish the following task. I want to compare several lines against multiple regular expressions and retrieve the matching group. In Ruby it would be something like this: STDIN.each_line do |line| case line when /^A:(.*?)$/ then puts "FOO: #{$1}" when /^B:(.*?)$/ then puts "BAR: #{$1}" # when ... else puts "NO MATCH: #{line}" end end My attempts in Python are turning out pretty ugly because the matching group is returned from a call to match/search on a regular expression and Python has no assignment in conditionals or switch statements. What's the Pythonic way to do (or think!) about this problem?

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  • regular expression code

    - by Gaia Andreoletti
    Deal all, I need to find match between two tab delimited files files like this: File 1: ID1 1 65383896 65383896 G C PCNXL3 ID1 2 56788990 55678900 T A ACT1 ID1 1 56788990 55678900 T A PRO55 File 2 ID2 34 65383896 65383896 G C MET5 ID2 2 56788990 55678900 T A ACT1 ID2 2 56788990 55678900 T A HLA what I would like to do is to retrive the matching line between the two file. What I would like to match is everyting after the gene ID So far I have written this code but unfortunately perl keeps giving me the error: use of "Use of uninitialized value in pattern match (m//)" Could you please help me figure out where i am doing it wrong? Thank you in advance! use strict; open (INA, $ARGV[0]) || die "cannot to open gene file"; open (INB, $ARGV[1]) || die "cannot to open coding_annotated.var files"; my @sample1 = <INA>; my @sample2 = <INB>; foreach my $line (@sample1) { my @tab = split (/\t/, $line); my $chr = $tab[1]; my $start = $tab[2]; my $end = $tab[3]; my $ref = $tab[4]; my $alt = $tab[5]; my $name = $tab[6]; foreach my $item (@sample2){ my @fields = split (/\t/,$item); if ($fields[1]=~ m/$chr(.*)/ && $fields[2]=~ m/$start(.*)/ && $fields[4]=~ m/$ref(.*)/ && $fields[5]=~ m/$alt(.*)/&& $fields[6]=~ m/$name(.*)/){ print $line,"\n",$item; } } }

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  • Redirect visitor with .htaccess

    - by Aaron
    Hi all, I've got an e-shop on a virtual server that's been used as a subdirectory for the last few years, but now I'm finally giving the VS it's own domain name. What I really need is visitors to the old URL to be transparently (and 301) redirected to the new URL with everything after /eshop/ maintained and apended to the new host. I.e. http://www.example.com/eshop/page.php - http://www.newdomain.com/page.php Any help would be greatly appreciated.

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  • Modify a reference numbered group to match against

    - by StuperUser
    I want to match YYYY-YY for sequential years. I at moment I'm trying to match where all the second YY is the 3rd and 4th characters in YYYY with 1 added to it. So far I've got {19|20}(\d{2})-(\d{2}), but not sure how to use ? with reference to (1) or whether I'm going about this the right way and finding out the inevitable "unknown unknowns" (like YY99) with this approach? Edit: Matches: 2010-11,2011-12,2029-30 Not matches: 2010-12, 2010-09,2011-2,2011-2012

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  • questions on nfa and dfa..

    - by Loop
    Hi Guys... Hope you help me with this one.... I have a main question which is ''how to judge whether a regular expression will be accepted by NFA and/or DFA? For eg. My question says that which of the regular expressions are equivalent? explain... 1.(a+b)*b(a+b)*b(a+b)* 2.a*ba*ba* 3.a*ba*b(a+b)* do we have to draw the NFA and DFA and then find through minimisation algorithm? if we do then how do we come to know that which regular expression is accepted by NFA/DFA so that we can begin with the answer? its so confusing.... Second is a very similar one, the question asks me to show that the language (a^nb^n|n1} is not accepted by DFA...grrrrr...how do i know this? (BTW this is a set of all strings of where a number of a's is followed by the same number of b's).... I hope I explained clearly well....

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  • perl ENV value avoid escape

    - by Michael
    In my makefile I have command in variable like this substitute := perl -p -e 's/@([^@]+)@/"$(update_url)"/ge' > output.txt update_url := em:updateURL=\"http:\/\/bla\/update.rdf\"\n this works fine when I run command in target and I have newline, quotes however I need to replace $(update_url)" with environment variable, using expression like this #substitute := perl -p -e 's/@([^@]+)@/defined $$ENV{$$1} ? $$ENV{$$1} : $$1/ge' I am exporting those variables from makefile. This gives me literally em:updateURL=\"http:\/\/bla\/update.rdf\"\n on output file... so how to make the second version to give output like first version?

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  • A "smart" (forgiving) date parser?

    - by jdmuys
    I have to migrate a very large dataset from one system to another. One of the "source" column contains a date but is really a string with no constraint, while the destination system mandates a date in the format yyyy-mm-dd. Many, but not all, of the source dates are formatted as yyyymmdd. So to coerce them to the expected format, I do (in Perl): return "$1-$2-$3" if ($val =~ /(\d{4})[-\/]*(\d{2})[-\/]*(\d{2})/); The problem arises when the source dates moves away from the "generic" yyyymmdd. The goal is to salvage as many dates as possible, before giving up. Example source strings include: 21/3/1998, March 2004, 2001, 3/4/97 I can try to match as many of the examples I can find with a succession of regular expressions such as the one above. But is there something smarter to do? Am I not reinventing the wheel? Is there a library somewhere doing something similar? I couldn't find anything relevant googling "forgiving date parser". (any language is OK).

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  • Use Regular expression with fileinput

    - by chrissygormley
    Hello, I am trying to replace a variable stored in another file using regular expression. The code I have tried is: r = re.compile(r"self\.uid\s*=\s*('\w{12})'") for line in fileinput.input(['file.py'], inplace=True): print line.replace(r.match(line), sys.argv[1]), The format of the variable in the file is: self.uid = '027FC8EBC2D1' I am trying to pass in a parameter in this format and use regular expression to verify that the sys.argv[1] is correct format and to find the variable stored in this file and replace it with the new variable. Can anyone help. Thanks for the help.

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  • preg_replace function to append a string to all the hyperlinks of a page

    - by KoolKabin
    hi guys, i want to append my own value to all hyperlinks in a page... e.g if there are links: <a href="abc.htm?val=1">abc 1</a> <br/> <a href="abc.htm?val=2">abc 1</a> <br/> <a href="abc.htm?val=3">abc 1</a> <br/> <a href="abc.htm?val=4">abc 1</a> <br/> I want to add next var like "type=int" to all hyperlinks output should be: <a href="abc.htm?val=1&type=int">abc 1</a> <br/> <a href="abc.htm?val=2&type=int">abc 1</a> <br/> <a href="abc.htm?val=3&type=int">abc 1</a> <br/> <a href="abc.htm?val=4&type=int">abc 1</a> <br/> I hope it can be done quite easily with preg_replace function

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  • Remove newlines and spaces

    - by Cosmin
    How can I remove newline between <table> .... </table> and add \n after each ex: <table border="0" cellspacing="0" cellpadding="0" width="450" class="descriptiontable"><tr> <td width="50%" valign="top"> <span class="displayb">Model Procesor:</span> Intel Celeron<br><span class="displayb">Frecventa procesor (MHz):</span> 2660<br><span class="displayb">Placa Video:</span> Intel Extreme Graphics 2<br><span class="displayb">Retea integrata:</span> 10/100Mbps, RJ-45<br><span class="displayb">Chipset:</span> Intel 845G<br> </td> <td width="50%" valign="top"> <span class="displayb">Capacitate RAM (MB):</span> 512<br><span class="displayb">Tip RAM:</span> DDR<br> </td> </tr></table> and become : <table border="0" cellspacing="0" cellpadding="0" width="450" class="descriptiontable"><tr><td width="50%" valign="top"><span class="displayb">Model Procesor:</span> Intel Celeron<br><span class="displayb">Frecventa procesor (MHz):</span> 2660<br><span class="displayb">Placa Video:</span> Intel Extreme Graphics 2<br><span class="displayb">Retea integrata:</span> 10/100Mbps, RJ-45<br><span class="displayb">Chipset:</span> Intel 845G<br></td><td width="50%" valign="top"><span class="displayb">Capacitate RAM (MB):</span> 512<br><span class="displayb">Tip RAM:</span> DDR<br></td></tr></table>\n s.

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  • Explain a block of crazy JS code inside Sizzle(the CSS selector engine)

    - by Andy Li
    So, here is the function for pre-filtering "CHILD": function(match){ if ( match[1] === "nth" ) { // parse equations like 'even', 'odd', '5', '2n', '3n+2', '4n-1', '-n+6' var test = /(-?)(\d*)n((?:\+|-)?\d*)/.exec( match[2] === "even" && "2n" || match[2] === "odd" && "2n+1" || !/\D/.test( match[2] ) && "0n+" + match[2] || match[2]); // calculate the numbers (first)n+(last) including if they are negative match[2] = (test[1] + (test[2] || 1)) - 0; match[3] = test[3] - 0; } // TODO: Move to normal caching system match[0] = done++; return match; } The code is extracted from line 442-458 of sizzle.js. So, why is the line var test = ..., have the exec inputing a boolean? Or is that really a string? Can someone explain it by splitting it into a few more lines of code?

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  • How do you validate a URL with a regular expression in Python?

    - by Zachary Spencer
    I'm building a Google App Engine app, and I have a class to represent an RSS Feed. I have a method called setUrl which is part of the feed class. It accepts a url as an input. I'm trying to use the re python module to validate off of the RFC 3986 Reg-ex (http://www.ietf.org/rfc/rfc3986.txt) Below is a snipped which should work, right? I'm incredibly new to Python and have been beating my head against this for the past 3 days. p = re.compile('^(([^:/?#]+):)?(//([^/?#]*))?([^?#]*)(\?([^#]*))?(#(.*))?') m = p.match(url) if m: self.url = url return url

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  • [PHP] preg_replace: replacing using %

    - by Juan
    Hi all, I'm using the function preg_replace but I cannot figure out how to make it work, the function just doesn't seem to work for me. What I'm trying to do is to convert a string into a link if any word contains the % (percentage) character. For instance if I have the string "go to %mysite", I'd like to convert the mysite word into a link. I tried the following... $data = "go to %mysite"; $result = preg_replace('/(^|[\s\.\,\:\;]+)%([A-Za-z0-9]{1,64})/e', '\\1%<a href=#>\\2</a>', $data); ...but it doesn't work. Any help on this would be much appreciated. Thanks Juan

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  • Java String.split

    - by user903772
    I have the following text: ARIYALUR:ARIYALUR|CHENNAI:CHENNAI|COIMBATORE:COIMBATORE|CUDDALORE:CUDDALORE|DINDIGUL:DINDIGUL|ERODE:ERODE|KANCHEEPURAM:KANCHEEPURAM|KANYAKUMARI:KANYAKUMARI|KRISHNAGIRI:KRISHNAGIRI|MADURAI:MADURAI|NAMAKKAL:NAMAKKAL|NILGIRIS:NILGIRIS|PERAMBALUR:PERAMBALUR|PONDICHERRY:PONDICHERRY|SALEM:SALEM|THANJAVUR:THANJAVUR|THENI:THENI|THIRUVALLUR:THIRUVALLUR|THOOTHUKUDI:THOOTHUKUDI|TIRUNELVELI:TIRUNELVELI|VELLORE:VELLORE|VILLUPURAM:VILLUPURAM|VIRUDHUNAGAR:VIRUDHUNAGAR| I tried to do a split("|") but my array is made up of alphabets and not each district. Please help.

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