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• R: convert data.frame columns from factors to characters

  - by Mike Dewar

  Hi, I have a data frame. Let's call him bob: > head(bob) phenotype exclusion GSM399350 3- 4- 8- 25- 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399351 3- 4- 8- 25- 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399352 3- 4- 8- 25- 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399353 3- 4- 8- 25+ 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399354 3- 4- 8- 25+ 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399355 3- 4- 8- 25+ 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- I'd like to concatenate the rows of this data frame (this will be another question). But look: > class(bob$phenotype) [1] "factor" Bob's columns are factors. So, for example: > as.character(head(bob)) [1] "c(3, 3, 3, 6, 6, 6)" "c(3, 3, 3, 3, 3, 3)" [3] "c(29, 29, 29, 30, 30, 30)" I don't begin to understand this, but I guess these are indices into the levels of the factors of the columns (of the court of king caractacus) of bob? Not what I need. Strangely I can go through the columns of bob by hand, and do bob$phenotype <- as.character(bob$phenotype) which works fine. And, after some typing, I can get a data.frame whose columns are characters rather than factors. So my question is: how can I do this automatically? How do I convert a data.frame with factor columns into a data.frame with character columns without having to manually go through each column? Bonus question: why does the manual approach work?

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• Shipping Java code with data baked into the .jar

  - by Andrew

  I need to ship some Java code that has an associated set of data. It's a simulator for a device, and I want to be able to include all of the data used for the simulated records in the one .JAR file. In this case, each simulated record contains four fields (calling party, called party, start of call, call duration). What's the best way to do that? I've gone down the path of generating the data as Java statements, but IntelliJ doesn't seem particularly happy dealing with a 100,000 line Java source file! Is there a smarter way to do this? In the C#/.NET world I'd create the data as a separate file, embed it in the assembly as a resource, and then use reflection to pull that out at runtime and access it. I'm unsure of what the appropriate analogy is in the Java world. FWIW, Java 1.6, shipping for Solaris.

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• Get control instance in asp.net dynamic data

  - by Ashwani K

  Hello All: I am creating a web application using Asp.net dynamic data. I am using GridView to show data from the database. In the grid view I am having following code for columns <Columns> <asp:DynamicField DataField="UserId" UIHint="Label" /> <asp:DynamicField DataField="Address" UIHint="Address"/> <asp:DynamicField DataField="CreatedDate" UIHint="Label" /> </Columns> But, before displaying I want to do some processing in C# code for each row. In normal ASP.net grid view we can handle OnRowDataBound method, and using FindControl("controlid") we can get the control instance, but in case of dynamic data, I am not getting any id attribute for columns, so I am not able to get the control instance to show updated data in that control depending on some conditions. Thanks, Ashwani

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• Neo4j Reading data / performing shortest path calculations on stored data

  - by paddydub

  I'm using the Batch_Insert example to insert Data into the database How can i read this data back from the database. I can't find any examples of how i do this. public static void CreateData() { // create the batch inserter BatchInserter inserter = new BatchInserterImpl( "var/graphdb", BatchInserterImpl.loadProperties( "var/neo4j.props" ) ); Map<String,Object> properties = new HashMap<String,Object>(); properties.put( "name", "Mr. Andersson" ); properties.put( "age", 29 ); long node1 = inserter.createNode( properties ); properties.put( "name", "Trinity" ); properties.remove( "age" ); long node2 = inserter.createNode( properties ); inserter.createRelationship( node1, node2, DynamicRelationshipType.withName( "KNOWS" ), null ); inserter.shutdown(); } I would like to store graph data in the database, graph.makeEdge( "s", "c", "cost", (double) 7 ); graph.makeEdge( "c", "e", "cost", (double) 7 ); graph.makeEdge( "s", "a", "cost", (double) 2 ); graph.makeEdge( "a", "b", "cost", (double) 7 ); graph.makeEdge( "b", "e", "cost", (double) 2 ); Dijkstra<Double> dijkstra = getDijkstra( graph, 0.0, "s", "e" ); What is the best method to store this kind data with 10000's of edges. Then run the Dijskra algorighm to find shortest path calculations using the stored graph data.

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• Oracle Data Pump import to a sql file error :ORA-31655 no data or metadata objects

  - by Francisco Quiñones

  Hello, I'm using Data Pump to export/import data, one requirement is to import data to a sql file. The OS is window. I made the follow export : expdp system/password directory=dpump_dir dumpfile=tablesdump.dmp content=DATA_ONLY tables=user.tablename and it works, I can see the file TABLESDUMP.DMP in the directory path. then when I tried to import it to a sql file: impdp system/password directory=dpump_dir dumpfile=tablesdump.dmp sqlfile=tables_export.sql the log show : ..... ORA-31655 no data or metadata objects selected for job ..... and the sql file is created empty in the directory path. I'm not DBA, I'm a Java developer , Can you help me? Thks

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• Using MySQL as data source in Microsoft SQL Server Analysis Services

  - by coldilocks

  Hi, I have installed the latest .net connector (http://www.mysql.com/downloads/connector/net/), I can add MySQL databases as Data Sources, I can even browse through the data from Business Intelligence Studio. The problem is that I CANNOT create a datasource view, or if I do create one without tables, trying to add them after the fact gives me the same error. Specifically it looks like the data source view wizard tries to submit queries against the MySQL database using square brackets/braces, and the query bombs. I get an error message like: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '[my_db].[cheatType]' at line 2 So, in summary, has anyone been able to create a data source view using MySQL tables and, if so, can they please show me how this can be done. Thanks for any help!

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• Generating video or images of geometrical objects from data

  - by Jonathan Barbero

  Hello, I'm working in a course's project to predict the velocity and position of the solar system planets (and other objects). It will be really cool if I can visualize the predicted objects data, if it's possible generating 3D images, if in video that's amazing. Do you know any library that lets me to use this data to generate an image or video? (I don't care in which language) Data: - simulation step (time line step for a video) - positions of the objects - radius and/or colours of the objects Thanks in advance, any suggestion is welcome.

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• Flex 3: should I provide prepared data to my component or make it to process data before display?

  - by grapkulec

  I'm starting to learn a little Flex just for fun and maybe to prove that I still can learn something new :) I have some idea for a project and one of its parts is a tree component which could display data in different ways depending on configuration. The idea There is list of objects having properties like id, date, time, name, description. And sometimes list should be displayed like this: first level: date second level: time third level: name and sometimes like this: first level: year second level: month third level: day fourth level: time and name By level I mean level of nesting of course. So, we can have years, that have months, that have days, that have hours and so forth. The problem What could be the best way to do it? I mean, should I prepare data for different ways of nesting outside of component or even outside of flex? I can do it at web service level in C# where I plan to have database access layer and send to flex nice and ready to display XML or array of objects. But I wonder if that won't cause additional and maybe unneccessary network traffic. I tried to hack some code in my component to convert my data objects into XML or ArrayCollection but I don't know enough of Flex and got stuck on elimination of duplicates or getting specific data by some key value. Usually to do such things I have STL with maps, sets and vectors and I find Flex arrays and even Dictionary a little bit confusing (I've read language reference and googled without any significant luck). The question So, to sum things up: should I give my tree component data prepared just for chosen type of display or should I try to do it internally inside component (or some helper class written in ActionScript)?

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• Mock Object Data

  - by Nissan Fan

  I'd like to mock up object data, not the objects themselves. In other words, I would like to generate a collection of n objects and pass it into a function which generates random data strings and numbers. Is there anything to do this? Think of it as a Lorem Ipsum for object data. Constraints around numerical ranges etc. are not necessary, but would be a bonus.

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• subset a data.frame with multiple conditions

  - by pslice

  Suppose my data looks like this: 2372 Kansas KS2000111 HUMBOLDT, CITY OF ATRAZINE 1.3 05/07/2006 9104 Kansas KS2000111 HUMBOLDT, CITY OF ATRAZINE 0.34 07/23/2006 9212 Kansas KS2000111 HUMBOLDT, CITY OF ATRAZINE 0.33 02/11/2007 2094 Kansas KS2000111 HUMBOLDT, CITY OF ATRAZINE 1.4 05/06/2007 16763 Kansas KS2000111 HUMBOLDT, CITY OF ATRAZINE 0.61 05/11/2009 1076 Kansas KS2000111 HUMBOLDT, CITY OF METOLACHLOR 0.48 05/12/2002 1077 Kansas KS2000111 HUMBOLDT, CITY OF METOLACHLOR 0.3 05/07/2006 I want to be able to subset by the Analyte and a partial match on the date(namely I just want the year). I have been trying this, but I know it isn't quite right. data[data$Analyte=="ATRAZINE" & grep("2006",as.character(data$Date)),] Any suggestions?

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• Essential skills of a Data Scientist

  - by harshsinghal

  I would like to know more about the relevant skills in the arsenal of a Data Scientist, and with new technologies coming in every day, how one picks and chooses the essentials. A few ideas germane to this discussion: Knowing SQL and the use of a DB such as MySQL, PostgreSQL was great till the advent of NoSql and non-relational databases. MongoDB, CouchDB etc. are becoming popular to work with web-scale data. Knowing a stats tool like R is enough for analysis, but to create applications one may need to add Java, Python, and such others to the list. Data now comes in the form of text, urls, multi-media to name a few, and there are different paradigms associated with their manipulation. What about cluster computing, parallel computing, the cloud, Amazon EC2, Hadoop ? OLS Regression now has Artificial Neural Networks, Random Forests and other relatively exotic machine learning/data mining algos. for company Thoughts?

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• PHP - Redirect and send data via POST

  - by Jeremy Rudd

  I have an online gateway which requires an HTML form to be submitted with hidden fields. I need to do this via a PHP script without any HTML forms (I have the data for the hidden fields in a DB) To do this sending data via GET: header('Location: http://www.provider.com/process.jsp?id=12345&name=John'); And to do this sending data via POST?

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• Producer Consumer Issue with Core Data

  - by Mugunth Kumar

  I've a Core Data application. In the producer thread, I pull data from a web service and store it in my object and call save. My consumer object is a table view controller that displays the same. However, the app crashes and I get NSFetchedResultsController Error: expected to find object (entity: FeedEntry; id: 0xf46f40 ; data: ) in section (null) for deletion on the console. When I debug it, everything works fine. So I understood that it's like a race issue. How is these kind of problem solved? What's the best way to design a producer-consumer app with core-data?

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• SQL Server: export data via SQL query?

  - by rlb.usa

  I have FK and PK all over my db and table data needs to be specified in a certain order or else I get FK/PK insertion errors. I'm tired of executing the wizard again and again to transfer data one table at a time. In the SQL Server export data wizard there is an option to "Write a query to specify the data to transfer". I'd like to write the query myself and specify the correct order. Will this solve my problem? How do I do this? Can you provide a sample query (or link to one) The databases are on two different servers - SQL Server 2008 on each ; The database names & permissions are the same ; each table name & col is the same ; I need Identity Insert for each table.

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• What data structures and algorithms are applied within data warehouse cubes?

  - by Jeff Meatball Yang

  I understand that cubes are optimized data structures for aggregating and "slicing" large amounts of data. I just don't know how they are implemented. I can imagine a lot of this technology is proprietary, but are there any resources that I could use to start implementing my own cube technology? Set theory and lots of math are probably involved (and welcome as suggestions!), but I'm primarily interested in implementations: the data structures and query algorithms. Thanks!

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• How do I get the value of a DynamicControl?

  - by Telos

  I'm using ASP.NET Dynamic Data functionality to do something a little weird. Namely, create a dynamic list of fields as children of the main object. So basically I have Ticket.Fields. The main page lists all the fields for Ticket, and the Fields property has a DynamicControl that generates a list of controls to collect more data. The tricky part is that this list ALSO uses Dynamic Data to generate the controls, so each field can be any of the defined FieldTemplates... meaning I don't necessarily know what the actual data control will be when I try to get the value. So, how do I get the value of a DynamicControl? Do I need to create a new subclass of FieldTemplate that provides a means to get at the value?

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• Android App Widget: Data storage

  - by Jeffrey

  Hello everyone, I'm implementing a home screen app widget. I was wondering which is better to store/read data: SharedPreferences or a SQLite database? The data is accessed from an AppWidgetProvider (similar to a BroadcastReceiver), and any given instance of the widget displays different data based on appWidgetId. Is one way or the other frowned upon? Thanks for your time.

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• WCF. BasicHttpBinding Certificates.

  - by Andrew Kalashnikov

  Hello colleagues. I've got some problems. I've created WCF service with basicHttpBinding and hosted by IIS 6.0. <system.serviceModel> <bindings> <basicHttpBinding> <binding name="BindingConfiguration1" maxBufferPoolSize="2147483647" maxReceivedMessageSize="2147483647"> <readerQuotas maxDepth="2147483647" maxStringContentLength="2147483647" maxArrayLength="2147483647" maxBytesPerRead="2147483647" maxNameTableCharCount="2147483647"/> <security mode="Transport"> <transport clientCredentialType="None" /> </security> </binding> </basicHttpBinding> </bindings> <services> <service name="RegistratorService.Registrator" behaviorConfiguration="RegistratorService.Service1Behavior"> <endpoint address="" binding="basicHttpBinding" contract="RegistratorService.IRegistrator" bindingConfiguration="BindingConfiguration1"> <identity> <dns value="localhost" /> </identity> </endpoint> <endpoint address="mex" binding="mexHttpsBinding" contract="IMetadataExchange"/> </service> </services> <behaviors> <serviceBehaviors> <behavior name="RegistratorService.Service1Behavior"> <serviceCredentials> <clientCertificate> <authentication certificateValidationMode="PeerOrChainTrust" revocationMode="NoCheck"/> </clientCertificate> <serviceCertificate storeLocation="LocalMachine" storeName="My" findValue="CN=Server" /> </serviceCredentials> <serviceMetadata httpsGetEnabled="true" /> <serviceDebug includeExceptionDetailInFaults="true" /> </behavior> </serviceBehaviors> </behaviors> Also I have cert authority on this server and I issue certs for server and client. I server cert at server and client cert at client. When I try consume service from client I get famous: "Could not establish trust relationship for the SSL/TLS secure channel with authority" All sites recommend override ServicePointManager.ServerCertificateValidationCallback by set return value to true. Bu I want decide this issue other right way. My client config: <system.serviceModel> <behaviors> <endpointBehaviors> <behavior name="ClientBehavior"> <clientCredentials> <serviceCertificate> <authentication certificateValidationMode="ChainTrust" revocationMode="NoCheck"/> </serviceCertificate> <clientCertificate findValue="CN=PharmPortal" storeLocation="LocalMachine" storeName="My"/> </clientCredentials> </behavior> </endpointBehaviors> </behaviors> <bindings> <basicHttpBinding> <binding name="BasicHttpBinding_IRegistrator" closeTimeout="00:01:00" openTimeout="00:01:00" receiveTimeout="00:10:00" sendTimeout="00:01:00" allowCookies="false" bypassProxyOnLocal="false" hostNameComparisonMode="StrongWildcard" maxBufferSize="65536" maxBufferPoolSize="524288" maxReceivedMessageSize="65536" messageEncoding="Text" textEncoding="utf-8" transferMode="Buffered" useDefaultWebProxy="true"> <readerQuotas maxDepth="32" maxStringContentLength="8192" maxArrayLength="16384" maxBytesPerRead="4096" maxNameTableCharCount="16384" /> <security mode="Transport"> <transport clientCredentialType="None" proxyCredentialType="None" realm="" /> </security> </binding> </basicHttpBinding> </bindings> <client > <endpoint address="https://aurit-server2/Registrator.svc" binding="basicHttpBinding" behaviorConfiguration="ClientBehavior" bindingConfiguration="BasicHttpBinding_IRegistrator" contract="ServiceReference1.IRegistrator" name="BasicHttpBinding_IRegistrator" > <identity> <dns value="Server" /> </identity> </endpoint> </client> </system.serviceModel> I set up client certificate. Why i get error?

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• Sending html data via $post fails

  - by Neil

  I am using the code below which is fine but when I use the code below that in an attempt to send an html fragment to a processing page to save it as a file but I get nothing. I have tried using ajax with processData set to false ads dataTypes of html, text and xml but nothing works. I can't find anything on this so I guess I must be missing something fairly trivial but I've been at it for 3 hours now. This works $.post("SaveFile.aspx", {f: "test4.htm", c: "This is a test"}, function(data){ alert(data); }, "text"); This fails $.post("SaveFile.aspx", {f: "test4.htm", c: "<h1>This is a test</h1>"}, function(data){ alert(data); }, "text");

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• Core Data Null Relationship

  - by Dylan Copeland

  I have a to-one relationship in my data model with Core Data. I'm trying to set the value of the relationship but Core Data keeps thinking that it's nil. The "creatorUser" relationship is not optional, so when I go to save my managed object context, Core Data gives errors because it thinks the "creatorUser" is nil. Any help would be greatly advised. NSManagedObject *teamManagedObject = [NSEntityDescription insertNewObjectForEntityForName:@"DCTeam" inManagedObjectContext:_managedObjectContext]; // Creator Properties NSManagedObject *creator = [self userForID:[ticketInfo objectForKey:@"userid"]]; if (!creator) { creator = [NSEntityDescription insertNewObjectForEntityForName:@"DCUser" inManagedObjectContext:_managedObjectContext]; [creator setValue:[personInfo objectForKey:@"userid"] forKey:@"userid"]; [creator setValue:[personInfo objectForKey:@"creatorName"] forKey:@"name"]; } [teamManagedObject setValue:creator forKey:@"creatorUser"];

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• Reimplementing data structures in the real world

  - by Jason

  The topic of algorithms class today was reimplementing data structures, specifically ArrayList in Java. The fact that you can customize a structure for in various ways definitely got me interested, particularly with variations of add() & iterator.remove() methods. But is reimplementing and customizing a data structure something that is of more interest to the academics vs the real-world programmers? Has anyone reimplemented their own version of a data structure in a commercial application/program, and why did you pick that route over your particular language's implementation?

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• Elegant way of parsing Data files for Simulation

  - by sc_ray

  I am working on this project where I need to read in a lot of data from .dat files and use the data to perform simulations. The data in my .dat file looks as follows: DeviceID InteractingDeviceID InteractionStartTime InteractionEndTime 1 2 1101 1105 1,2 1101 and 1105 are tab delimited and it means Device 1 interacted with Device 2 at 1101 ms and ended the interaction at 1105ms. I have a trace data sets that compile thousands of such interactions and my job is to analyze these interactions. The first step is to parse the file. The language of choice is C++. The approach I was thinking of taking was to read the file, for every line that's read create a Device Object. This Device object will contain the property DeviceId and an array/vector of structs, that will contain a list of all the devices the given DeviceId interacted with over the course of the simulation.The struct will contain the Interacting Device Id, Interaction Start Time and Interaction End Time. I have a two fold question here: Is my approach correct? If I am on the right track, how do I rapidly parse these tab delimited data files and create Device objects without excessive memory overhead using C++? A push in the right direction will be much appreciated. Thanks

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• Finding the most common values from given data

  - by Ben Shelock

  I have some data that looks something like this... +----------+----------+----------+ | Column 1 | Column 2 | Column 3 | +----------+----------+----------+ | Red | Blue | Green | | Yellow | Blue | Pink | | Black | Grey | Blue | +--------------------------------+ I need to go through this data and find the 3 most common colours. The raw data is in CSV and there's likely to be thousands more rows. (link) What's the best way of doing this?

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• List of generic algorithms and data structures

  - by Jake Petroules

  As part of a library project, I want to include a plethora of generic algorithms and data structures. This includes algorithms for searching and sorting, data structures like linked lists and binary trees, path-finding algorithms like A*... the works. Basically, any generic algorithm or data structure you can think of that you think might be useful in such a library, please post or add it to the list. Thanks! (NOTE: Because there is no single right answer I've of course placed this in community wiki... and also, please don't suggest algorithms which are too specialized to be provided by a generic library) The List: Data structures AVL tree B-tree B*-tree B+-tree Binary tree Binary heap Binary search tree Linked lists Singly linked list Doubly linked list Stack Queue Sorting algorithms Binary tree sort Bubble sort Heapsort Insertion sort Merge sort Quicksort Selection sort Searching algorithms

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• Deploying App With Dummy/Initial Data

  - by mattmccomb

  I have a Core Data based application that stores hierarchal data displayed using a series of UITableViews. To illustrate my app functionality to the user I would like to pre-populate my database/app with some dummy values. This data would be available upon installation on the user's iPhone/iPod Touch. What is the best way to achieve this?

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