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  • Is it possible to shuffle a 2D matrix while preserving row AND column frequencies?

    - by j_random_hacker
    Suppose I have a 2D array like the following: GACTG AGATA TCCGA Each array element is taken from a small finite set (in my case, DNA nucleotides -- {A, C, G, T}). I would like to randomly shuffle this array somehow while preserving both row and column nucleotide frequencies. Is this possible? Can it be done efficiently? [EDIT]: By this I mean I want to produce a new matrix where each row has the same number of As, Cs, Gs and Ts as the corresponding row of the original matrix, and where each column has the same number of As, Cs, Gs and Ts as the corresponding column of the original matrix. Permuting the rows or columns of the original matrix will not achieve this in general. (E.g. for the example above, the top row has 2 Gs, and 1 each of A, C and T; if this row was swapped with row 2, the top row in the resulting matrix would have 3 As, 1 G and 1 T.) It's simple enough to preserve just column frequencies by shuffling a column at a time, and likewise for rows. But doing this will in general alter the frequencies of the other kind. My thoughts so far: If it's possible to pick 2 rows and 2 columns so that the 4 elements at the corners of this rectangle have the pattern XY YX for some pair of distinct elements X and Y, then replacing these 4 elements with YX XY will maintain both row and column frequencies. In the example at the top, this can be done for (at least) rows 1 and 2 and columns 2 and 5 (whose corners give the 2x2 matrix AG;GA), and for rows 1 and 3 and columns 1 and 4 (whose corners give GT;TG). Clearly this could be repeated a number of times to produce some level of randomisation. Generalising a bit, any "subrectangle" induced by a subset of rows and a subset of columns, in which the frequencies of all rows are the same and the frequencies of all columns are the same, can have both its rows and columns permuted to produce a valid complete rectangle. (Of these, only those subrectangles in which at least 1 element is changed are actually interesting.) Big questions: Are all valid complete matrices reachable by a series of such "subrectangle rearrangements"? I suspect the answer is yes. Are all valid subrectangle rearrangements decomposable into a series of 2x2 swaps? I suspect the answer is no, but I hope it's yes, since that would seem to make it easier to come up with an efficient algorithm. Can some or all of the valid rearrangements be computed efficiently? This question addresses a special case in which the set of possible elements is {0, 1}. The solutions people have come up with there are similar to what I have come up with myself, and are probably usable, but not ideal as they require an arbitrary amount of backtracking to work correctly. Also I'm concerned that only 2x2 swaps are considered. Finally, I would ideally like a solution that can be proven to select a matrix uniformly at random from the set of all matrices having identical row frequencies and column frequencies to the original. I know, I'm asking for a lot :)

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  • ggplot add percentage labels based on x-axis variables

    - by eugeneyan
    I've a ggplot that shows the counts of tweets for some brands as well as a label for the overall percentage. This was done with much help from this link: ggplot: showing % instead of counts in charts of categorical variables # plot ggplot of brands ggplot(data = test, aes(x = brand, fill = brand)) + geom_bar() + stat_bin(aes(label = sprintf("%.02f %%", ..count../sum(..count..)*100)), geom = 'text', vjust = -0.3) Next, I would like to plot it based on brand and sentiment, with the labels for the bars of each brand totalling up to 100%. However, I have difficulty amending my code to do this. Would you be able to help please? Also, would it be possible to change the colours for neu to blue and pos to green? # plot ggplot of brands and sentiment ggplot(data = test, aes(x = brand, fill = factor(sentiment))) + geom_bar(position = 'dodge') + stat_bin(aes(label = sprintf("%.02f %%", ..count../sum(..count..)*100)), geom = 'text', position = position_dodge(width = 0.9), vjust=-0.3)

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  • Extending a form field to add new validations.

    - by duallain
    I've written an app that uses forms to collect information that is then sent in an email. Many of these forms have a filefield used to attach files to the email. I'd like to validate two things, the size of the file (to ensure the emails are accepted by our mail server. I'd also like to check the file extension, to discourage attaching file types not useable for our users. (This is the python class I'm trying to extend) class FileField(Field): widget = FileInput default_error_messages = { 'invalid': _(u"No file was submitted. Check the encoding type on the form."), 'missing': _(u"No file was submitted."), 'empty': _(u"The submitted file is empty."), 'max_length': _(u'Ensure this filename has at most %(max)d characters (it has %(length)d).'), } def __init__(self, *args, **kwargs): self.max_length = kwargs.pop('max_length', None) super(FileField, self).__init__(*args, **kwargs) def clean(self, data, initial=None): super(FileField, self).clean(initial or data) if not self.required and data in EMPTY_VALUES: return None elif not data and initial: return initial # UploadedFile objects should have name and size attributes. try: file_name = data.name file_size = data.size except AttributeError: raise ValidationError(self.error_messages['invalid']) if self.max_length is not None and len(file_name) > self.max_length: error_values = {'max': self.max_length, 'length': len(file_name)} raise ValidationError(self.error_messages['max_length'] % error_values) if not file_name: raise ValidationError(self.error_messages['invalid']) if not file_size: raise ValidationError(self.error_messages['empty']) return data

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  • Add file in ANT build (Tomcat server)

    - by Shaded
    Hey everyone, I have an ANT build that I need to setup so on deployment of the .war a certain file will be placed in a specific location. Currently my ant builds the war as follows... <target name="war" depends="jar"> <war destfile="${deploy}/file.war" webxml="${web-inf}/web.xml"> <fileset dir="${WebRoot}"> <include name="**/*.vm" /> <include name="**/*.js" /> <include name="**/*.jsp" /> <include name="**/*.html" /> <include name="**/*.css" /> <include name="**/*.gif" /> <include name="**/*.jpg" /> <include name="**/*.png" /> <include name="**/*.tld" /> <include name="**/applicationContext*.xml" /> <include name="**/jpivot/**" /> <include name="**/wcf/**" /> <include name="**/platform/**" /> <include name="**/Reports/**" /> </fileset> <lib dir="${web-inf.lib}" /> </war> </target> The file I need is called Scriptlet.class and it needs to be in WebRoot/WEB-INF/classes/ I've tried several things to get this to work and have yet to find one that works... if anyone can point me in the right direction I'd appreciate it!

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  • Jquery add percent sign to input box

    - by kingzing1
    I'd like to have an input box that automatically adds a visible percent sign to the user when entering numbers (not just recognizes it as a percent when submitting). Thus, a user hits "2" and sees "2%" I'm assuming one could use Jquery to do this fairly easily, but I have no idea how! Any ideas? Thanks everyone.

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  • Drupal: can't add the taxonomy field to Views ?

    - by Patrick
    hi, I've prepared a View for my nodes and I've selected which fields to display. I just realized that there is not the taxonomy field from Content:Taxonomy There is only Taxonomy:Term category and warning: "The content might be duplicated, use appropriate filters". Should I use this item ? What kind of filters should I use ? thanks

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  • sometimes there is a problem with add favorite name

    - by Y.G.J
    in some of the websites i have, when adding to favorite with IE button the name of the favorite that is auto filled in by the page title is sometimes not getting the name and insted it gets the url where the "/" is replaced by "-" and ":" is removed what is the problem? the websites are hebrew or english, encoding is utf-8 or windows-1255...

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  • Add static const data to a struct already defined

    - by Kyle
    Since static const data inside a class is really just namespace sugar for constants I would think that struct A { float a; struct B { static const int b = a; }; }; would be equivalent to struct A { float a; }; struct A::B { static const int b = a; }; or something similar. Is something like this possible in C++? It would be useful for me to be able to tag class definitions that I'm pulling in from third party libraries with information like this.

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  • how to add data in Table of Jasper Report using Java

    - by Areeb Gillani
    i am here to ask you just a simple question that i am trying to pass data to a jasper report using java but i dont know how to to, because the table data is very dynamic thats y cannot pass sql query. any idea for this. i have a 2D array of object type, where i have all the data... so how can i pass that... Thanx in advance...!:) ConnectionManager con = new ConnectionManager(); con.establishConnection(); String fileName = "Pmc_Bill.jrxml"; String outFileName = "OutputReport.pdf"; HashMap params = new HashMap(); params.put("PName", pname); params.put("PSerial", psrl); params.put("PGender",pgen); params.put("PPhone",pph); params.put("PAge",page); params.put("PRefer",pref); params.put("PDateR",dateNow); try { JasperReport jasperReport = JasperCompileManager.compileReport(fileName); if(jasperReport != null ) System.out.println("so far so good "); // Fill the report using an empty data source JasperPrint jasperPrint = JasperFillManager.fillReport(jasperReport, params, new JRTableModelDataSource(tbl.getModel()));//con.connection); try{ JasperExportManager.exportReportToPdfFile(jasperPrint, outFileName); System.out.printf("File exported sucessfully"); }catch(Exception e){ e.printStackTrace(); } JasperViewer.viewReport(jasperPrint); } catch (JRException e) { JOptionPane.showMessageDialog(null, e); e.printStackTrace(); System.exit(1); }

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  • Add handler multiple times in jquery

    - by AdmSteck
    How does jquery handle event assignment when it comes to assigning the same handler multiple times? Let's say I have <div class="draggable">Some Text</div> Are there any side effects (performance or otherwise) from calling the following multiple times? $('.draggable').draggable();

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  • how to add values in array

    - by nhoyti
    hi guys, i just want to ask help again. I've created a method to read values in gridview, i was able to get and read values from the gridview. The problem now, is how can i store the values inside an array and i want it to pass on the other page. here's the code i've created private void getrowvalues() { string combinedvalues; foreach (GridViewRow row in gvOrderProducts.Rows) { string prodname = ((Label)row.FindControl("lblProductName")).Text; string txtvalues = ((TextBox)row.FindControl("txtQuantity")).Text; combinedvalues = prodname + "|" + txtvalues; } } i want the result string combinedvalues to be put in an array or collection of strings which i can be access in other page. Is there a way to do it? Any inputs will be greatly appreciated. thanks!!

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  • Add a Message Bar or Info Bar to Word using interop or vsto

    - by Aaron
    I have VS 2010 and Word 2010. In Word 2010 there is sometimes a message/warning bar that pops up under the ribbon but above the body of the document that allows the user to do an action. It looks something like this... Can I programmatically though VSTO or Interop create a custom bar that allows the user to click a button and then it executes some code. If not, is there an alternative popup or dialog box that will do something like this? Thanks, A

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  • How to add libraries in C++?

    - by m00st
    Yea this is a dumb question... However in both of my C++ classes we did not do this at all (except for native libraries: iostream, iomanip, etc.)... My question is can anyone provide a link that gives the general explanation of adding libraries to C++? I do realize what what #include means; it's just I have no clue on the linker/directories in a C++ IDE. So long question short; could I get a general explanation of terms used to link libraries in C++? I'm using c::b w/ MinGW.

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  • pagerAnchorBuilder - trying to add classes

    - by Bert Murphy
    I'm using Cycle2 to build a carousel gallery and I've run into a little problem regarding styling the pager buttons. What I've gathered is that Cycle2 creates its own pager span tags for each slide which is a bummer becaus I've already styled my the sub-nav markup. This should be a minor issue as long as I can assign individual classes to the spans and change my css accordingly. However, I can't get this to work. TLDR: I was hoping that I could use pagerAnchorBuilder to create individual classes for each span. I can't. Help. The original markup (pre Cycle2) looks like the following: <div id ="sub-nav" class="sub-nav"> <ul> <li><a id="available" class="available" href="#"></a></li> <li><a id="reliable" class="reliable" href="#"></a></li> <li><a id="use" class="use" href="#"></a></li> <li><a id="reports" class="reports" href="#"></a></li> <li class="last"><a id="software" class="software" href="#"></a></li> </ul> </div> With Cycle2 it looks like this (note the addition of the span tags) <div id ="sub-nav" class="sub-nav"> <ul> <li><a id="available" class="available" href="#"></a></li> <li><a id="reliable" class="reliable" href="#"></a></li> <li><a id="use" class="use" href="#"></a></li> <li><a id="reports" class="reports" href="#"></a></li> <li class="last"><a id="software" class="software" href="#"></a></li> </ul> <span class="cycle-pager-active">•</span><span>•</span><span>•</span><span>•</span><span>•</span></nav> </div> Cycle2 $('#sliding-gallery ul').cycle({ fx: 'carousel', carouselVisible: 1, speed: 'fast', timeout: 10000, slides: '>li', next: '.next', prev: '.prev', pager: '.sub-nav', pagerAnchorBuilder: function(idx, slide) { return '.sub-nav span:eq(' + idx + ')'; } });

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  • Forbid public Add and Delete for a List<T>

    - by aaginor
    Hi folks, in my C#-project, I have a class which contains a List public class MyClass { public MyClass parent; public List<MyClass> children; ... } I want to prevent the user of the class from Adding (and Deleting) an Element to the children-List, but he shall still be able to parse its elements. I want to handle the Adding and Deleting within MyClass, providing an AddChild(MyClass item) and DeleteChild(MyClass item) to ensure that, when an item is added to the child list, the parent of that item will be set properly. Any idea how to do this besides implementing my own IList? Thanks in advance, Frank

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  • problem in add custom error message in zend_element

    - by user1400
    hello all i created a text element like following code $test = $this->createElement('text', 'test'); $test->setLabel('test:'); $test->addValidator(new Zend_Validate_Int()); $test->addErrorMessages(array('isEmpty'=>'u should enter a number','%value% is not integer')); $shomare->setRequired(true); $this->addElement($test); when i set empty or non integer number to textbox , it show both its own error message , if its empty errormessage="u should enter a number" and when it is not a valid integer it shows '%value% is not integer' thanks

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  • Can't add or remove object from NSMutableSet

    - by Dan Ray
    Check it: - (IBAction)toggleFavorite { DataManager *data = [DataManager sharedDataManager]; NSMutableSet *favorites = data.favorites; if (thisEvent.isFavorite == YES) { NSLog(@"Toggling off"); thisEvent.isFavorite = NO; [favorites removeObject:thisEvent.guid]; [favoriteIcon setImage:[UIImage imageNamed:@"notFavorite.png"] forState:UIControlStateNormal]; } else { NSLog(@"Toggling on, adding %@", thisEvent.guid); thisEvent.isFavorite = YES; [favorites addObject:thisEvent.guid]; [favoriteIcon setImage:[UIImage imageNamed:@"isFavorite.png"] forState:UIControlStateNormal]; } NSLog(@"favorites array now contains %d members", [favorites count]); } This is fired from a custom UIButton. The UI part works great--toggles the image used for the button, and I can see from other stuff that the thisEvent.isFavorite BOOL is toggling happily. I can also see in the debugger that I'm getting my DataManager singleton. But here's my NSLog: 2010-05-13 08:24:32.946 MyApp[924:207] Toggling on, adding 05db685f65e2 2010-05-13 08:24:32.947 MyApp[924:207] favorites array now contains 0 members 2010-05-13 08:24:33.666 MyApp[924:207] Toggling off 2010-05-13 08:24:33.666 MyApp[924:207] favorites array now contains 0 members 2010-05-13 08:24:34.060 MyApp[924:207] Toggling on, adding 05db685f65e2 2010-05-13 08:24:34.061 MyApp[924:207] favorites array now contains 0 members 2010-05-13 08:24:34.296 MyApp[924:207] Toggling off 2010-05-13 08:24:34.297 MyApp[924:207] favorites array now contains 0 members Worst part is, this USED to work, and I don't know what I did to break it.

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  • Cordova polluted logs with persistent.js add()

    - by slaver113
    I am using the latest phonegap/cordova version 2.1. and my log in Eclipse logcat get polluted with code when i do var allItems = Item.all(); allItems.list(null, function (results) { results.forEach(function (r) { console.log(r.id+ " " + r.lat + " " + r.long + " " + r.state); }); }); I get a output like (for 100s of lines) 10-29 10:56:13.270: I/Web Console(5961): } function (value) { 10-29 10:56:13.270: I/Web Console(5961): if (value === undefined) { 10-29 10:56:13.270: I/Web Console(5961): return getterCallback(); 10-29 10:56:13.270: I/Web Console(5961): } else { 10-29 10:56:13.270: I/Web Console(5961): setterCallback(value); 10-29 10:56:13.270: I/Web Console(5961): return scope; 10-29 10:56:13.270: I/Web Console(5961): } 10-29 10:56:13.270: I/Web Console(5961): } function (value) { 10-29 10:56:13.270: I/Web Console(5961): if (value === undefined) { 10-29 10:56:13.270: I/Web Console(5961): return getterCallback(); 10-29 10:56:13.270: I/Web Console(5961): } else { 10-29 10:56:13.270: I/Web Console(5961): setterCallback(value); 10-29 10:56:13.270: I/Web Console(5961): return scope; 10-29 10:56:13.270: I/Web Console(5961): } 10-29 10:56:13.270: I/Web Console(5961): } function (value) { 10-29 10:56:13.270: I/Web Console(5961): if (value === undefined) { 10-29 10:56:13.270: I/Web Console(5961): return getterCallback(); 10-29 10:56:13.270: I/Web Console(5961): } else { 10-29 10:56:13.270: I/Web Console(5961): setterCallback(value); 10-29 10:56:13.270: I/Web Console(5961): return scope; 10-29 10:56:13.270: I/Web Console(5961): } 10-29 10:56:13.270: I/Web Console(5961): } at :1149822901

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  • jQuery: Add Numbers into an Ordered List

    - by qwer0o
    I would like to use jQuery to make this: <ol> <li>item a</li> <li>item b</li> </ol> <ol> <li>item c</li> <li>item d</li> <li>item e</li> </ol> …become this: <ol> <li><span>1</span> item a</li> <li><span>2</span> item b</li> </ol> <ol> <li><span>1</span> item c</li> <li><span>2</span> item d</li> <li><span>3</span> item e</li> </ol> (This answer doesn't work for when there are multiple ols on the page; the number would increment across the ols instead of starting from 1 for each individual ol.)

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  • Add something to symbol in dynamicly loaded swf (ActionScript 3)

    - by user1468671
    I have a program written in Flash Builder with Flex 4.6 sdk and swf movie with some symbols inside. Those symbols moving around the stage. What I need is load that swf in my program and replace one of those symbols to my bitmap and show whole swf in flashContainer. There is my code for now: var swfLoader:Loader = new Loader(); var bgUrl:URLRequest = new URLRequest("testMovie.swf"); swfLoader.contentLoaderInfo.addEventListener(Event.COMPLETE, function(event: Event) : void { var movie: MovieClip = event.target.content; var headClass: Class = movie.loaderInfo.applicationDomain.getDefinition("headSymbol") as Class; var head:MovieClip = new headClass() as MovieClip; head.addChild(bmp); flashContainer.source = movie; }); but in flashContainer showed old movie. If I do flashContainer.source = head; then only head with my bmp appears. Need help. And sorry for my bad English.

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