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  • Polygon with different line width (in R)

    - by Tal Galili
    Hi all, I would like to use a command like this: plot(c(1,8), 1:2, type="n") polygon(1:7, c(2,1,2,NA,2,1,2), col=c("red", "blue"), # border=c("green", "yellow"), border=c(1,10), lwd=c(1:10)) To create two triangles, with different line widths. But the polygon command doesn't seem to recycle the "lwd" parameter as it does the col or the border parameters. I would like the resulting plot to look like what the following code will produce: plot(c(1,8), 1:2, type="n") polygon(1:3, c(2,1,2), col=c("red"), # border=c("green", "yellow"), border=c(1,10), lwd=c(1)) polygon(5:7, c(2,1,2), col=c( "blue"), # border=c("green", "yellow"), border=c(1,10), lwd=c(10)) So my questions are: Is there something like polygon that does what I asked for? (If not, I would do it by creating a new polygon function that will break the original x,y by their NA's, although I am not yet sure what is the smartest way to do that...) Thanks, Tal

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  • What ways are there for cleaning an R environment from objects?

    - by Tal Galili
    I know I can use ls() and rm() to see and remove objects that exist in my environment. However, when dealing with "old" .RData file, one needs to sometimes pick an environment a part to find what to keep and what to leave out. What I would like to do, is to have a GUI like interface to allow me to see the objects, sort them (for example, by there size), and remove the ones I don't need (for example, by a check-box interface). Since I imagine such a system is not currently implemented in R, what ways do exist? What do you use for cleaning old .RData files? Thanks, Tal

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  • is there a way to get a "subtree" from hclust ? (R)

    - by Tal Galili
    Hello all, I wish to create a "subtree" from an hclust object. For example, let's say I have the following object: a <- list() # initialize empty object a$merge <- matrix(c(-1, -2, -3, -4, 1, 2, -5,-6, 3,4), nc=2, byrow=TRUE ) a$height <- c(1, 1.5, 3,4,4.5) # define merge heights a$order <- 1:6 # order of leaves(trivial if hand-entered) a$labels <- 1:6# LETTERS[1:4] # labels of leaves class(a) <- "hclust" # make it an hclust object plot(a) # look at the result Now I wish the extract from it the following subtree: a <- list() # initialize empty object a$merge <- matrix(c(-1, -2, -3, -4, 1, 2 ), nc=2, byrow=TRUE ) a$height <- c(1, 1.5, 3) # define merge heights a$order <- 1:4 # order of leaves(trivial if hand-entered) a$labels <- 1:4# LETTERS[1:4] # labels of leaves class(a) <- "hclust" # make it an hclust object plot(a) # look at the result How could I access it? (I know that cutree could get me the objects of the sub tree, but not create an actual hclust object) Thanks for any help, Tal

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  • Last Observation Carried Forward In a data frame?

    - by Tal Galili
    Hi all, I wish to implement a "Last Observation Carried Forward" for a data set I am working on which has missing values at the end of it. Here is a simple code to do it (question after it): LOCF <- function(x) { # Last Observation Carried Forward (for a left to right series) LOCF <- max(which(!is.na(x))) # the location of the Last Observation to Carry Forward x[LOCF:length(x)] <- x[LOCF] return(x) } # example: LOCF(c(1,2,3,4,NA,NA)) LOCF(c(1,NA,3,4,NA,NA)) Now this works great for simple vectors. But if I where to try and use it on a data frame: a <- data.frame(rep("a",4), 1:4,1:4, c(1,NA,NA,NA)) a t(apply(a, 1, LOCF)) # will make a mess It will turn my data frame into a character matrix. Can you think of a way to do LOCF on a data.frame, without turning it into a matrix? (I could use loops and such to correct the mess, but would love for a more elegant solution) Cheers, Tal

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  • What must one know when approaching web development?

    - by Tal Koren
    I just started working as a novice Web Developer. I know PHP pretty well, as well as some basic jQuery. Anyway, my boss told me I should explore and learn about MVC, Memcache, Design Patterns, how Apache servers work and how to set one up etc. What I want to ask is actually this: What should I learn further? Web Development is a big area and most odds are that I'll never stop learning, but what are the basics I should learn about? What are the fundamentals? Currently I'm focusing on Server Side Development, but a very big part of me also wants to become a front-end ninja, so please consider that in your comments. Thanks in advance, you rock. :)

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  • Getting office 2007 to work through wine - with Hebrew

    - by Tal Galili
    I tried to have office 2007 installed using playonlinux. It went well, except that when I try to change my keyboard to Hebrew and start writing - the software immediately crashes. I checked it with powerpoint, were it doesn't crash but any Hebrew text is changed into "[][][][]" signs. How might I resolve this? Thanks. Update: I was able to get the program to stop crashing by running "export LANG=he_IL.UTF-8 " However, now the text in hebrew is upside down. (e.g: ???? ?? will look like ??????)

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  • Tudta? - Havonta szemináriumokat tartunk Support témában az Oracle irodában

    - by user552636
          Nézzen be az Oracle Hungary irodájába, ahol általában minden hónap elso hétfojén tájékoztatót tartunk az Oracle támogatásról, hogy Ügyfeleink minél jobban ki tudják használni az Oracle Support nyújtotta lehetoségeket. Ha Ön mindennapi munkája során gyakran lép kapcsolatba az Oracle Support-tal, bizonyára hasznosnak találja majd szemináriumainkat, melyeken tájékoztatást adunk az Oracle Support-tal való hatékony együttmuködés módjáról, a támogató eszközökrol, folyamatokról technológiákról. A szemináriumok ingyenesen látogathatók. A szemináriumsorozat aktuális témájáról a My Oracle Support 1475680.1  cikkébol tájékozódhatnak. Legutóbbi szemináriumon az Oracle Konfiguráció Kezelorol, az Auto Service Request (ASR) -rol, valamint a Licencmigrációról beszéltünk. (E témák anyagait hamarosan feltöltöm a blog-hoz.) A következo szemináriumot rendkívüli módon az Oracle Oktatás "Guru Party-jával" együtt tartjuk, az eladások témáját késobb fogom közzé tenni a 1475680.1 cikkben, valamint ezen a blog-on.  

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  • Using todolist (abstract spoon) on ubuntu 11.10?

    - by Tal Galili
    I wish to run todolist 6.3.8 (http://www.codeproject.com/KB/applications/todolist2.aspx) on ubuntu 11.10. I have installed the latest wine and winetricks. I have tried running: http://www.codeproject.com/KB/applications/todolist2.aspx winetricks vcrun2005 winetricks vcrun2008 winetricks vcrun6 Which installed all of the components. When I went to run todolist.exe, it started fine with the "first time wizard" (asking me where to save definitions and what file to open first), and then it stopped saying "the program todolist.exe has encountered a serious problem and needs to close. we are sorry for the inconvenience". What can I do to make this (great) software work on ubuntu? Thanks.

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  • Lost access to the unity interface how to fix? (ubuntu 11.10)

    - by Tal Galili
    o.k, this is embarrassing: I have installed Compiz Config Settings Manager and tried to fix it so that the transition time between changing tabs (using alt+tab) will be short. by accident I un-pressed V from something else, and it asked me about a conflict - I pressed the "x" button to close the window and as a result I stopped seeing the unity interface. That is - I can not see any buttons of the left side. I went to the terminal (ctrl+alt+F1) and ran ccsm As a result I got the following error: $ ccsm /usr/lib/python2.7/site-packages/gtk-2.0/gtk/__init__.py:57: GtkWarning: could not open display warnings.warn(str(e), _gtk.Warning) Traceback (most recent call last): File "/usr/bin/ccsm", line 93, in <module> import ccm File "/usr/lib/python2.7/site-packages/ccm/__init__.py", line 1, in <module> from ccm.Conflicts import * File "/usr/lib/python2.7/site-packages/ccm/Conflicts.py", line 26, in <module> from ccm.Constants import * File "/usr/lib/python2.7/site-packages/ccm/Constants.py", line 29, in <module> CurrentScreenNum = gtk.gdk.display_get_default().get_default_screen().get_number() AttributeError: 'NoneType' object has no attribute 'get_default_screen' What should I do next? Thanks.

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  • How can I use R (Rcurl/XML packages ?!) to scrap this webpage ?

    - by Tal Galili
    Hi all, I have a (somewhat complex) webscraping challenge that I wish to accomplish and would love for some direction (to whatever level you feel like sharing) here goes: I would like to go through all the "species pages" present in this link: http://gtrnadb.ucsc.edu/ So for each of them I will go to: The species page link (for example: http://gtrnadb.ucsc.edu/Aero_pern/) And then to the "Secondary Structures" page link (for example: http://gtrnadb.ucsc.edu/Aero_pern/Aero_pern-structs.html) Inside that link I wish to scrap the data in the page so that I will have a long list containing this data (for example): chr.trna3 (1-77) Length: 77 bp Type: Ala Anticodon: CGC at 35-37 (35-37) Score: 93.45 Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCCGCCCTCGCACGGCGGAGGcCCCGGGTTCAAATCCCGGCCGGTCCACCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.... Where each line will have it's own list (inside the list for each "trna" inside the list for each animal) I remember coming across the packages Rcurl and XML (in R) that can allow for such a task. But I don't know how to use them. So what I would love to have is: 1. Some suggestion on how to build such a code. 2. And recommendation for how to learn the knowledge needed for performing such a task. Thanks for any help, Tal

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  • How to read.table with "Hebrew" column names (in R)?

    - by Tal Galili
    Hi all, I am trying to read a .txt file, with Hebrew column names, but without success. I uploaded an example file to: http://www.talgalili.com/files/aa.txt And am trying the command: read.table("http://www.talgalili.com/files/aa.txt", header = T, sep = "\t") This returns me with: X.....ª X...ª...... X...œ.... 1 12 97 6 2 123 354 44 3 6 1 3 Instead of: ??? ????? ???? 12 97 6 123 354 44 6 1 3 My output for: l10n_info() Is: $MBCS [1] FALSE $`UTF-8` [1] FALSE $`Latin-1` [1] TRUE $codepage [1] 1252 And for: Sys.getlocale() Is: [1] "LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252" Can you suggest to me what to try and change to allow me to load the file correctly ? Update: Trying to use: read.table("http://www.talgalili.com/files/aa.txt",fileEncoding ="iso8859-8") Has resulted in: V1 1 ? Warning messages: 1: In read.table("http://www.talgalili.com/files/aa.txt", fileEncoding = "iso8859-8") : invalid input found on input connection 'http://www.talgalili.com/files/aa.txt' 2: In read.table("http://www.talgalili.com/files/aa.txt", fileEncoding = "iso8859-8") : incomplete final line found by readTableHeader on 'http://www.talgalili.com/files/aa.txt' While also trying this: Sys.setlocale("LC_ALL", "en_US.UTF-8") Or this: Sys.setlocale("LC_ALL", "en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8") Get's me this: [1] "" Warning message: In Sys.setlocale("LC_ALL", "en_US.UTF-8") : OS reports request to set locale to "en_US.UTF-8" cannot be honored Any suggestion or clarification will be appreciated. Best, Tal

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  • How do you combine "Revision Control" with "WorkFlow" for R?

    - by Tal Galili
    Hello all, I remember coming across R users writing that they use "Revision control" (e.g: "Source control"), and I am curious to know: How do you combine "Revision control" with your statistical analysis WorkFlow? Two (very) interesting discussions talk about how to deal with the WorkFlow. But neither of them refer to the revision control element: http://stackoverflow.com/questions/1266279/how-to-organize-large-r-programs http://stackoverflow.com/questions/1429907/workflow-for-statistical-analysis-and-report-writing A Long Update To The Question: Following some of the people's answers, and Dirk's question in the comment, I would like to direct my question a bit more. After reading the Wiki article about "revision control" (which I was previously not familiar with), it was clear to me that when using revision control, what one does is to build a development structure of his code. This structure either leads to a "final product" or to several branches. When building something like, let's say, a website. There is usually one end product you work towards (the website), with some prototypes along the way. But when doing a statistical analysis, the work (to my view) is different. Sometimes you know where you want to get to. But more often, you explore. Explore cleaning the dataset. Explore different methods for statistical analysis, and ask various questions of your data (and I am writing this, knowing how Frank Harrell, and other experience statisticians feels about Data dredging). That is way the WorkFlow question with statistical programming is (in my view) a serious and deep question, raising many issues, The simpler ones are technical: Which revision control software do you use (and why) ? Which IDE do you use(and why) ? The more interesting question are about work process: How do you structure your files? What do you keep as a separate file and what as a revision? or asking in a different way - What should be a "branch" and what should be a "sub project" in your code? For example: When starting to explore your data, should a plot be creating and then erased because it didn't lead any where (but kept as a revision) or should there be a backup file of that path? How you solve this tension was my initial curiosity. The second question is "what might I be missing?". What rules (of thumb) should one follow so to avoid common pitfalls doing statistical programming with version control? In my intuition, I feel that statistical programming is inherently different then software development (I am writing this without being a real expert in statistical programming, and even less so in software development). That's way I am unsure which of the lessons I have read here about version control would be applicable. Thanks a lot, Tal

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  • Remove parent of matched locator

    - by Ilan
    Is there a way to locate a node based child properties? I need to run a web.config transform to remove the 2nd <dependentAssembly in the following: <runtime> <assemblyBinding xmlns="urn:schemas-microsoft-com:asm.v1"> <!-- Don't want to delete this one --> <dependentAssembly> <assemblyIdentity name="System.Web.Helpers" publicKeyToken="31bf3856ad364e35"/> <bindingRedirect oldVersion="1.0.0.0-2.0.0.0" newVersion="2.0.0.0"/> </dependentAssembly> <!-- This is the one I want to delete --> <dependentAssembly> <assemblyIdentity name="Microsoft.VisualStudio.Enterprise.AspNetHelper" publicKeyToken="b03f5f7f11d50a3a" culture="neutral"/> <codeBase version="11.0.0.0" href="file:///C:/Program%20Files%20(x86)/Microsoft%20Visual%20Studio%2011.0/Common7/IDE/PrivateAssemblies/Microsoft.VisualStudio.Enterprise.AspNetHelper.DLL"/> </dependentAssembly> </assemblyBinding> </runtime> Finding the <assemblyIdentity is easy enough, but I need to delete the parent <dependentAssembly (and <codeBase). If there was a "xdt:Transform="RemoveParent" this would do the trick, but AFAIK there isn't. Alternatively if there was a Locator I could use on the <dependentAssembly which would match children, then that could work too.

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  • How to clear the memory allocated for Customized Exception

    - by ilan
    Hi All I have a customized exception class. say class CustomExcep{}; My Application is a middleware made of C++. It is a webservice which is used for the communication between Java based web Front-end and the DCE Backend. whenever the DCE Backend is not running or down due to some core dumps, the application throws the CustomExcep. It's like this. CustomExcep * exc = new CustomExcep(); throw exc; I am unable to use the stack memory for this as it leads to some run-time exceptions. I need a solution to clear the memory used by this CustomException. Can we use Templates for this purpose? Any help would be appreciated. Thanks in Advance.

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  • DNS down in Anonymous attack

    - by Tal Weiss
    As I'm writing this our company website and the web-service we developed are down in the big GoDaddy outage resulting from an Anonymous attack (or so says Twitter). We used GoDaddy as our registrar and we use it for DNS for some domains. Tomorrow is a new day - what can we do to mitigate such outages? Simply moving to, say, Route 53 for DNS might not be enough. Is there any way to remove this single point of failure?

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  • Appointment scheduling web service ?

    - by Tal Galili
    Hi all. I am looking for a web service that can allow me to publish an online calendar in which I offer open time slots - and then clients can fill in when they would like to come. And if a time is taken by one client, another won't be able to take it. What services can offer this? Thanks.

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  • adding many points to a personalized google map

    - by Tal Galili
    Hi all, I wish to create a personalized google map (as is shown here), I see it is possible to import a geo file (KML, KMZ or GeoRSS) with many points. I would love to use that but don't know how to create such a geo file in the first place. Which one should I use? What is the best way to create them? Thanks.

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  • Ubuntu (11.10) fails to connect to wireless network

    - by Tal Galili
    I just installed ubuntu 11.10, and tried to have it connect to the internet. I use a wireless USB stick by edimax (it is called IEEE802.11b/g/n nano USB adapter or also EW-7811Un). My problem is that Ubuntu seems to be able to use the USB to see the networks around me, but when I try to connect to my network - it just keeps trying and failing. I am connected to the internet through a 300M Wireless N Router Model No. TL-WR841N / TL-WR841ND Can you please advise on how this can be resolved? Thanks!

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  • Mounting fuse sshfs fails when invoked by Cron on FreeBSD 9.0

    - by Tal
    I have a remote server filesystem that I'm attempting to mount locally on a FreeBSD 9 machine via FUSE sshfs, and Cron for a backup routine. I have ssh keys between the boxes setup to allow for passwordless login as the root user on the local machine. Cron is set to run the following script (in Root's crontab): #!/bin/sh echo "Mounting Share" /usr/local/bin/sshfs -C -o reconnect -o idmap=user -o workaround=all <remote user>@<remote domain>.com: /mnt/remote_server As root, I can run this script on the command line without issue, and without being asked for a password the share mounts successfully. Yet, when run by Cron the script fails. The path to sshfs is identical to the value of which sshfs Here is the email root receives from the Cron Daemon: X-Cron-Env: <SHELL=/bin/sh> X-Cron-Env: <HOME=/root> X-Cron-Env: <PATH=/usr/bin:/bin> X-Cron-Env: <LOGNAME=root> X-Cron-Env: <USER=root> Mounting Share fuse: failed to exec mount program: No such file or directory fuse: failed to mount file system: No such file or directory I'm stumped as to why I'm receiving No such file or directory in this instance. It further seems odd given that the paths appear to be correct. I've also attempted to compare the output of env on the shell with env inserted into the script. I don't see any environment variables that should cause this trouble. At bootup, FUSE reports its version as: fuse4bsd: version 0.3.9-pre1, FUSE ABI 7.8 Help me ServerFault wizards, you're my only hope!

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  • How can I backup my windows XP drivers?

    - by Tal Galili
    Hello all, I've got a new (well, used) laptop. I wish to format and reinstall the windows OS on it. On the machine I've got several drivers which I would like to transport to the new machine, but I don't have the original drivers CD's. Is there a software that can backup my drivers, and then later let me reinstall them on the new windows installation? Thanks.

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