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  • The suggested way to handle pip(easy_install) with homebrew?

    - by Drake
    I know there are brew-gem and brew-pip but it is still really easy to get confused. Let's say my Mac OS X is 10.7.2. There are at least, as far as I know, 3 locations for Python modules (assume 2.7): /System/Library/Frameworks/Python.framework/Versions/2.7/ /Library/Python/2.7/site-packages /usr/local/lib/python2.7/site-packages/ (controlled within homebrew) For some Python modules, pip install them into 2, the so-called local/customized Python module location, and everything looks and works great. Ex, readline by *easy_install* (ipython suggested me to install readline by *easy_install* instead of pip) For some, it would try to install some miscellaneous files (ex, man, doc, ...) into system-wide location, which requires sudo! Ex, ipython insisted on installing man and doc into /System/Library/Frameworks/Python.framework/Versions/2.7/share/, which violates permission issue and all I can do is to use sudo. For some Python modules installed by brew, they are symbolic linked to /usr/local/lib/python2.7/site-packages/. Everything seems great except that you have to remember to add this location into PYTHONPATH. I am wondering any suggested and uniform way to handle those mass, or any explanation to make those stuff crystal clear.

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  • Safe to remove Python2.6 files?

    - by darkfeline
    I'm using Linux Mint 11 (will upgrade soon), and I've noticed that, even though I don't have any python2.6 packages installed with apt, there's a bunch of residual python2.6 files scattered around my drive, including, but not limited to, dist-packages in /usr/lib/python2.6 and various /usr/share stuff. Is there any way to test if these files are still being used? I'm tempted to sudo rm -rf the lot of them, but I'm scared it'll break stuff. Also, does anyone have any idea where these files could have come from? I believe I had python2.6 installed once upon a time, but I made sure to --purge them, so there shouldn't be any trace of them left, right? EDIT: after using a quick script to check all of the files, it appears most of them belong to important packages, so I won't try weeding out the few which I know are probably useless. Although I am curious why so many packages have python2.6 files when I don't even have it installed. These files are not associated with any packages and I'm not sure if they are safe to remove: /usr/bin/ipython2.6 /usr/lib/python2.6/dist-packages/distribute-0.6.15.egg-info /usr/lib/python2.6/dist-packages/easy_install.py /usr/lib/python2.6/dist-packages/IPython /usr/lib/python2.6/dist-packages/ipython-0.10.1.egg-info /usr/lib/python2.6/dist-packages/setuptools /usr/lib/python2.6/dist-packages/setuptools.egg-info /usr/lib/python2.6/dist-packages/setuptools.pth /usr/lib/python2.6/dist-packages/site.py /usr/lib/python2.6/dist-packages/wx.pth /usr/local/lib/python2.6 /usr/local/lib/python2.6/dist-packages /usr/local/lib/python2.6/site-packages /usr/share/man/man1/ipython2.6.1.gz

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  • cx_Oracle makes subprocess give OSError

    - by Shrikant Sharat
    I am trying to use the cx_Oracle module with python 2.6.6 on ubuntu Maverick, with Oracle 11gR2 Enterprise edition. I am able to connect to my oracle db just fine, but once I do that, the subprocess module does not work anymore. Here is an iPython session that reproduces the problem... In [1]: import subprocess as sp, cx_Oracle as dbh In [2]: sp.call(['whoami']) sharat Out[2]: 0 In [3]: con = dbh.connect('system', 'password') In [4]: con.close() In [5]: sp.call(['whomai']) --------------------------------------------------------------------------- OSError Traceback (most recent call last) /home/sharat/desk/calypso-launcher/<ipython console> in <module>() /usr/lib/python2.6/subprocess.pyc in call(*popenargs, **kwargs) 468 retcode = call(["ls", "-l"]) 469 """ --> 470 return Popen(*popenargs, **kwargs).wait() 471 472 /usr/lib/python2.6/subprocess.pyc in __init__(self, args, bufsize, executable, stdin, stdout, stderr, preexec_fn, close_fds, shell, cwd, env, universal_newlines, startupinfo, creationflags) 621 p2cread, p2cwrite, 622 c2pread, c2pwrite, --> 623 errread, errwrite) 624 625 if mswindows: /usr/lib/python2.6/subprocess.pyc in _execute_child(self, args, executable, preexec_fn, close_fds, cwd, env, universal_newlines, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) 1134 1135 if data != "": -> 1136 _eintr_retry_call(os.waitpid, self.pid, 0) 1137 child_exception = pickle.loads(data) 1138 for fd in (p2cwrite, c2pread, errread): /usr/lib/python2.6/subprocess.pyc in _eintr_retry_call(func, *args) 453 while True: 454 try: --> 455 return func(*args) 456 except OSError, e: 457 if e.errno == errno.EINTR: OSError: [Errno 10] No child processes So, the call to sp.call works fine before connecting to oracle, but breaks after that. Even if I have closed the connection to the database. Looking around, I found http://bugs.python.org/issue1731717 as somewhat related to this issue, but I am not dealing with threads here. I don't know if cx_Oracle is. Moreover, the above issue mentions that adding a time.sleep(1) fixes it, but it didn't help me. Any help appreciated. Thanks.

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  • Removing an element not currently in a list: ValueError?

    - by Izkata
    This is something that's bothered me for a while, and I can't figure out why anyone would ever want the language to act like this: In [1]: foo = [1, 2, 3] In [2]: foo.remove(2) ; foo # okay Out[2]: [1, 3] In [3]: foo.remove(4) ; foo # not okay? --------------------------------------------------------------------------- ValueError Traceback (most recent call last) /home/izkata/<ipython console> in <module>() ValueError: list.remove(x): x not in list If the value is already not in the list, then I'd expect a silent success. Goal already achieved. Is there any real reason this was done this way? It forces awkward code that should be much shorter: for item in items_to_remove: try: thingamabob.remove(item) except ValueError: pass Instead of simply: for item in items_to_remove: thingamabob.remove(item) As an aside, no, I can't just use set(thingamabob).difference(items_to_remove) because I do have to retain both order and duplicates.

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  • Use string as input to re.compile

    - by williamx
    I want to use a variable in a regex, like this: variables = ['variableA','variableB'] for i in range(len(variables)): regex = r"'('+variables[i]+')[:|=|\(](-?\d+(?:\.\d+)?)(?:\))?'" pattern_variable = re.compile(regex) match = re.search(pattern_variable, line) The problem is that python adds an extra backslash character for each backslash character in my regex string (ipython), and makes my regex invalid: In [76]: regex Out[76]: "'('+variables[i]+')[:|=|\\(](-?\\d+(?:\\.\\d+)?)(?:\\))?'" Any tips on how I can avoid this?

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  • Hide deprecated methods from tab completion

    - by Morgoth
    I would like to control which methods appear when a user uses tab-completion on a custom object in ipython - in particular, I want to hide functions that I have deprecated. I still want these methods to be callable, but I don't want users to see them and start using them if they are inspecting the object. Is this something that is possible?

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  • Debugging Django from the command-line

    - by chiggsy
    I'm working on debugging Django from the command-line. I'm working with django_extensions, and I have IPython installed and ideally I'd like to be able to extract as much information in the shell as possible. How would I go about this task most efficiently?

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  • Installing TKInter for Python 2.6.5

    - by Azfar
    Well today's been a bit of shock. After running port -v selfupdate followed by an attempt to run sudo port install py26-ipython MacPorts went around installing a whole host of stuff, including updating my Python from 2.6.4 to 2.6.5. It's nice but unexpected in a creepy way. So I tried to install TKInter using MacPorts with port search tkinter yielding: py-tkinter @2.4.6 (python, graphics) Python bindings to the Tk widget set py25-tkinter @2.5.4 (python, graphics) This is a stub. tkinter is now built with python25 Found 2 ports. So I tried sudo port install py25-tkinter and then it tries to install Python 2.5.5. There must be an easier way to install TkInter without being faffed around... help please?

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  • setup vim so that it searches the python path

    - by Dave
    I'm using vim as my primary editor with python files; I'd like to be able to easily open python files. As an example: I'm looking at a particular module A.py, in it I see the line import funkyModule, I want to edit that module so I just type in the command :pyed funkyModule and the pyed vim-command automatically finds the file funkyModule.py (or funkyModule/__init__.py) where ever it occurs on the python path. This capability is modeled on the capabilities if the ipython shell, where In [#]: edit funkyModule does what I've just described.

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  • How do you know where macports installs python packages to?

    - by xmaslist
    I am running macports to install scipy and such on OS X leopard with python 2.7. The install runs successfully, but running python and trying to import the packages I've installed, they're not found. What I'm running is: sudo python_select python27 sudo port install py27-wxpython py27-numpy py27-matplotlib sudo port install py27-scipy py27-ipython Opening up python in interactive mode (it is the correct version of python), I type 'import scipy' and get a module not found error. What gives? How can I find out where it is installing the packages to instead?

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  • Enthought Canopy - passing sys.argv from PySide Qt program

    - by user2541559
    I've recently been looking at the Enthought distro of iPython. Today I decided to see if I could get some Qt GUI progs running and was successful after making minor changes. Simple example: import sys from PySide import QtGui # was 'from PyQT4 import QtGui' # app = QtGui.QApplication(sys.argv) -- not needed win = QtGui.QWidget() win.resize(320, 240) win.setWindowTitle("Hello MIT 6X!") win.show() sys.exit() # was 'sys.exit(app.exec_())' But I would like to be able to pass sys.argv in some cases. Most example code I see is in the form of the commented out 'app = ' line above. If I include it, I get 'RuntimeError: A QApplication instance already exists.' Suggestions for passing arguments appreciated. Nick

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  • JVM (embarrasingly) parallel processing libraries/tools

    - by Winterstream
    I am looking for something that will make it easy to run (correctly coded) embarrassingly parallel JVM code on a cluster (so that I can use Clojure + Incanter). I have used Parallel Python in the past to do this. We have a new PBS cluster and our admin will soon set up IPython nodes that use PBS as the backend. Both of these systems make it almost a no-brainer to run certain types of code in a cluster. I made the mistake of using Hadoop in the past (Hadoop is just not suited to the kind of data that I use) - the latency made even small runs execute for 1-2 minutes. Is JPPF or Gridgain better for what I need? Does anyone here have any experience with either? Is there anything else you can recommend?

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  • Getting weird python error when I run a simple django script in Eclipse, not happening in console

    - by Rhubarb
    I am running a basic script that sets up the django environment by itself, to enable me to test the ORM features of django without having to implement web pages. The script then imports one of the types defined in my models. This error doesn't happen when I run this script from iPython, only from eclipse. Simply doing this import causes a weird exception like the following: Exception AttributeError: "'NoneType' object has no attribute 'print_exc'" in <bound method Signal._remove_receiver of <django.dispatch.dispatcher.Signal object at 0x026802B0>> ignored My script is as follows: from django.core.management import setup_environ import settings setup_environ(settings) from stats.models import Person for p in Person.objects.all(): print p.Name

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  • How to use unicode inside an xpath string? (UnicodeEncodeError)

    - by Gj
    I'm using xpath in Selenium RC via the Python api. I need to click an a element who's text is "Submit »" Here's the error that I'm getting: In [18]: sel.click(u"xpath=//a[text()='Submit \xbb')]") ERROR: An unexpected error occurred while tokenizing input The following traceback may be corrupted or invalid The error message is: ('EOF in multi-line statement', (1121, 0)) --------------------------------------------------------------------------- Exception Traceback (most recent call last) /Users/me/<ipython console> in <module>() /Users/me/selenium.pyc in click(self, locator) 282 'locator' is an element locator 283 """ --> 284 self.do_command("click", [locator,]) 285 286 /Users/me/selenium.pyc in do_command(self, verb, args) 213 #print "Selenium Result: " + repr(data) + "\n\n" 214 if (not data.startswith('OK')): --> 215 raise Exception, data 216 return data 217 <type 'str'>: (<type 'exceptions.UnicodeEncodeError'>, UnicodeEncodeError('ascii', u"ERROR: Invalid xpath [2]: //a[text()='Submit \xbb')]", 45, 46, 'ordinal not in range(128)'))

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  • Linking IronPython to WPF

    - by DonnyD
    I just installed VS2010 and the great new IronPython Tools extension. Currently this extension doesn't yet generate event handlers in code upon double-clicking wpf visual controls. Is there anyone that can provide or point me to an example as to how to code wpf event handlers manually in python. I've had no luck finding any and I am new to visual studio. Upon generating a new ipython wpf project the auto-generated code is: import clr clr.AddReference('PresentationFramework') from System.Windows.Markup import XamlReader from System.Windows import Application from System.IO import FileStream, FileMode app = Application() app.Run(XamlReader.Load(FileStream('WpfApplication7.xaml', FileMode.Open))) and the XAML is: <Window xmlns="http://schemas.microsoft.com/winfx/2006/xaml/presentation" xmlns:x="http://schemas.microsoft.com/winfx/2006/xaml" Title="WpfApplication7" Height="300" Width="300"> <Button>Click Me</Button> </Window> Any help would be appreciated.

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  • Should Python 2.6 on OS X deal with multiple easy-install.pth files in $PYTHONPATH?

    - by ahd
    I am running ipython from sage and also am using some packages that aren't in sage (lxml, argparse) which are installed in my home directory. I have therefore ended up with a $PYTHONPATH of $HOME/sage/local/lib/python:$HOME/lib/python Python is reading and processing the first easy-install.pth it finds ($HOME/sage/local/lib/python/site-packages/easy-install.pth) but not the second, so eggs installed in $HOME/lib/python aren't added to the path. On reading the off-the-shelf site.py, I cannot for the life of me see why it's doing this. Can someone enlighten me? Or advise how to nudge Python into reading both easy-install.pth files? Consolidating both into one .pth file is a viable workaround for now, so this question is mostly for curiosity value.

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  • How to write a shell in Python

    - by panzi
    I've written a small console application that can perform certain tasks. The user interface is similar to things like version control systems or yum etc. So basically you can think of it as a domain specific language. Now I'd like to write a (bash like) shell that can execute and auto-complete this language and has a command history (so I do not have to load and save the quite large xml files on each command). In a nutshell I want something like ipython but not for executing python code but my own DSL. Are there any libraries that help me doing this? I see that there is a readline and rlcompleter module in python but its documentation seems to indicate that this is only for use with the python shell itself, or did I miss something there?

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  • Python: Trying to get index of an intersection

    - by user1620716
    I have the following line of code: for i in [i for i,x in enumerate(catdate) if x == set(NNSRCfile['datetimenew']).intersection(catdate)]: print i I am trying to find the index of the intersection for the two components above. Both are lengthy lists that have several commonalities. The intersection part works perfectly; however, the for loop seems to output nothing. (ie: there is nothing that is printed). Python outputs no error, and when I run the code in IPython, I notice that i is equivalent to to the very last element in the list "catdate", instead of listing the indices of "catdate" that are equivalent to the intersection values. Any help is greatly appreciated!

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  • Problem about python import with error

    - by xiao
    Hello, I have write a small python module with one class and two functions. The skeleton of the module is as following: #file name: test_module.py class TestClass: @classmethod def method1(cls, param1): #to do something pass def __init__(self, param1): #to do something ... def fun1(*params): #to do something ... def fun2(*params): #to do something ... Another py file is a small script which imports function and class from the module, as following: import sys from test_module import TestClass, fun1, fun2 def main(sys_argv): li = range(5) inst1 = TestClass(li) fun1(inst1) fun2(inst1) return if __name__ == "__main__": main(sys.argv) But when I execute the script, it is broken with following message: ./script.py: line 4: syntax error near unexpected token `(' ./script.py: line 4: `def main(sys_argv):' I am not sure what the problem is. Is it a problem with import? But when I try to import the module in ipython, everything is just ok.

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  • Why is django.test.client.Client not keeping me logged in.

    - by Mystic
    I'm using django.test.client.Client to test whether some text shows up when a user is logged in. However, I the Client object doesn't seem to be keeping me logged in. This test passes if done manually with Firefox but not when done with the Client object. class Test(TestCase): def test_view(self): user.set_password(password) user.save() client = self.client # I thought a more manual way would work, but no luck # client.post('/login', {'username':user.username, 'password':password}) login_successful = client.login(username=user.username, password=password) # this assert passes self.assertTrue(login_successful) response = client.get("/path", follow=True) #whether follow=True or not doesn't seem to work self.assertContains(response, "needle" ) When I print response it returns the login form that is hidden by: {% if not request.user.is_authenticated %} ... form ... {% endif %} This is confirmed when I run ipython manage.py shell. The problem seems to be that the Client object is not keeping the session authenticated.

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  • Python script shows different pythonpath

    - by Bird Jaguar IV
    Attempting to run runsnake gives ImportError: No module named wx Opening an ipython or python session seems to work fine: >>> import wx >>> import sys >>> print [p for p in sys.path if 'wx' in p] ['/usr/local/lib/wxPython-2.9.4.0/lib/python2.7/site-packages', '/usr/local/lib/wxPython-2.9.4.0/lib/python2.7/site-packages/wx-2.9.4-osx_cocoa', '/usr/local/lib/wxPython-2.9.4.0/lib/python2.7/site-packages/wx-2.9.1-osx_cocoa/tools'] as does putting that code in a script and calling python script.py. But putting that code at the beginning of runsnake.py prints an empty list (printing the whole sys.path prints a path quite different from my $PYTHONPATH). Why would it be different, and how to I get it to recognize wxPython?

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  • How to suppress error messages in rpy2

    - by Björn
    Hello! The following code does not work. It seems that the R warning message raises a python error. # enable use of python objects in rpy2 import rpy2.robjects.numpy2ri import numpy as np from rpy2.robjects import r # create an example array a = np.array([[5,2,5],[3,7,8]]) # this line leads to a warning message, which in turn raises an # error message if run within a script. result = r['chisq.test'](a) Running that code example in ipython works, however, running it inside a script raises the errorTypeError: 'module' object is unsubscriptable. I assume this is due to the warning message. What is the best way to avoid this problem? Thanks in advance!

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  • Practical Python-based visual programming environment?

    - by Who8MyLunch
    I am looking for a practical visual programming environment based on Python. My primary application is algorithm development for processing remote-sensing imagery. I was initially inspired by LabVIEW from National Instruments, but that is more geared towards laboratory measurements and simulations. I write a lot of prototype code in Python and do a lot of interactive analysis with IPython. Does there exist a visual framework where a "program" is represented by connected nodes which each read data, do some work, and output data to the next node? I would like to use Python to write the code residing in each node. So far the best I've seen is Orange http://www.ailab.si/orange/, but it does not have the ability to start/stop individual nodes.

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