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  • Polygon with different line width (in R)

    - by Tal Galili
    Hi all, I would like to use a command like this: plot(c(1,8), 1:2, type="n") polygon(1:7, c(2,1,2,NA,2,1,2), col=c("red", "blue"), # border=c("green", "yellow"), border=c(1,10), lwd=c(1:10)) To create two triangles, with different line widths. But the polygon command doesn't seem to recycle the "lwd" parameter as it does the col or the border parameters. I would like the resulting plot to look like what the following code will produce: plot(c(1,8), 1:2, type="n") polygon(1:3, c(2,1,2), col=c("red"), # border=c("green", "yellow"), border=c(1,10), lwd=c(1)) polygon(5:7, c(2,1,2), col=c( "blue"), # border=c("green", "yellow"), border=c(1,10), lwd=c(10)) So my questions are: Is there something like polygon that does what I asked for? (If not, I would do it by creating a new polygon function that will break the original x,y by their NA's, although I am not yet sure what is the smartest way to do that...) Thanks, Tal

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  • What ways are there for cleaning an R environment from objects?

    - by Tal Galili
    I know I can use ls() and rm() to see and remove objects that exist in my environment. However, when dealing with "old" .RData file, one needs to sometimes pick an environment a part to find what to keep and what to leave out. What I would like to do, is to have a GUI like interface to allow me to see the objects, sort them (for example, by there size), and remove the ones I don't need (for example, by a check-box interface). Since I imagine such a system is not currently implemented in R, what ways do exist? What do you use for cleaning old .RData files? Thanks, Tal

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  • is there a way to get a "subtree" from hclust ? (R)

    - by Tal Galili
    Hello all, I wish to create a "subtree" from an hclust object. For example, let's say I have the following object: a <- list() # initialize empty object a$merge <- matrix(c(-1, -2, -3, -4, 1, 2, -5,-6, 3,4), nc=2, byrow=TRUE ) a$height <- c(1, 1.5, 3,4,4.5) # define merge heights a$order <- 1:6 # order of leaves(trivial if hand-entered) a$labels <- 1:6# LETTERS[1:4] # labels of leaves class(a) <- "hclust" # make it an hclust object plot(a) # look at the result Now I wish the extract from it the following subtree: a <- list() # initialize empty object a$merge <- matrix(c(-1, -2, -3, -4, 1, 2 ), nc=2, byrow=TRUE ) a$height <- c(1, 1.5, 3) # define merge heights a$order <- 1:4 # order of leaves(trivial if hand-entered) a$labels <- 1:4# LETTERS[1:4] # labels of leaves class(a) <- "hclust" # make it an hclust object plot(a) # look at the result How could I access it? (I know that cutree could get me the objects of the sub tree, but not create an actual hclust object) Thanks for any help, Tal

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  • Last Observation Carried Forward In a data frame?

    - by Tal Galili
    Hi all, I wish to implement a "Last Observation Carried Forward" for a data set I am working on which has missing values at the end of it. Here is a simple code to do it (question after it): LOCF <- function(x) { # Last Observation Carried Forward (for a left to right series) LOCF <- max(which(!is.na(x))) # the location of the Last Observation to Carry Forward x[LOCF:length(x)] <- x[LOCF] return(x) } # example: LOCF(c(1,2,3,4,NA,NA)) LOCF(c(1,NA,3,4,NA,NA)) Now this works great for simple vectors. But if I where to try and use it on a data frame: a <- data.frame(rep("a",4), 1:4,1:4, c(1,NA,NA,NA)) a t(apply(a, 1, LOCF)) # will make a mess It will turn my data frame into a character matrix. Can you think of a way to do LOCF on a data.frame, without turning it into a matrix? (I could use loops and such to correct the mess, but would love for a more elegant solution) Cheers, Tal

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  • What must one know when approaching web development?

    - by Tal Koren
    I just started working as a novice Web Developer. I know PHP pretty well, as well as some basic jQuery. Anyway, my boss told me I should explore and learn about MVC, Memcache, Design Patterns, how Apache servers work and how to set one up etc. What I want to ask is actually this: What should I learn further? Web Development is a big area and most odds are that I'll never stop learning, but what are the basics I should learn about? What are the fundamentals? Currently I'm focusing on Server Side Development, but a very big part of me also wants to become a front-end ninja, so please consider that in your comments. Thanks in advance, you rock. :)

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  • Getting office 2007 to work through wine - with Hebrew

    - by Tal Galili
    I tried to have office 2007 installed using playonlinux. It went well, except that when I try to change my keyboard to Hebrew and start writing - the software immediately crashes. I checked it with powerpoint, were it doesn't crash but any Hebrew text is changed into "[][][][]" signs. How might I resolve this? Thanks. Update: I was able to get the program to stop crashing by running "export LANG=he_IL.UTF-8 " However, now the text in hebrew is upside down. (e.g: ???? ?? will look like ??????)

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  • Tudta? - Havonta szemináriumokat tartunk Support témában az Oracle irodában

    - by user552636
          Nézzen be az Oracle Hungary irodájába, ahol általában minden hónap elso hétfojén tájékoztatót tartunk az Oracle támogatásról, hogy Ügyfeleink minél jobban ki tudják használni az Oracle Support nyújtotta lehetoségeket. Ha Ön mindennapi munkája során gyakran lép kapcsolatba az Oracle Support-tal, bizonyára hasznosnak találja majd szemináriumainkat, melyeken tájékoztatást adunk az Oracle Support-tal való hatékony együttmuködés módjáról, a támogató eszközökrol, folyamatokról technológiákról. A szemináriumok ingyenesen látogathatók. A szemináriumsorozat aktuális témájáról a My Oracle Support 1475680.1  cikkébol tájékozódhatnak. Legutóbbi szemináriumon az Oracle Konfiguráció Kezelorol, az Auto Service Request (ASR) -rol, valamint a Licencmigrációról beszéltünk. (E témák anyagait hamarosan feltöltöm a blog-hoz.) A következo szemináriumot rendkívüli módon az Oracle Oktatás "Guru Party-jával" együtt tartjuk, az eladások témáját késobb fogom közzé tenni a 1475680.1 cikkben, valamint ezen a blog-on.  

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  • Using todolist (abstract spoon) on ubuntu 11.10?

    - by Tal Galili
    I wish to run todolist 6.3.8 (http://www.codeproject.com/KB/applications/todolist2.aspx) on ubuntu 11.10. I have installed the latest wine and winetricks. I have tried running: http://www.codeproject.com/KB/applications/todolist2.aspx winetricks vcrun2005 winetricks vcrun2008 winetricks vcrun6 Which installed all of the components. When I went to run todolist.exe, it started fine with the "first time wizard" (asking me where to save definitions and what file to open first), and then it stopped saying "the program todolist.exe has encountered a serious problem and needs to close. we are sorry for the inconvenience". What can I do to make this (great) software work on ubuntu? Thanks.

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  • Lost access to the unity interface how to fix? (ubuntu 11.10)

    - by Tal Galili
    o.k, this is embarrassing: I have installed Compiz Config Settings Manager and tried to fix it so that the transition time between changing tabs (using alt+tab) will be short. by accident I un-pressed V from something else, and it asked me about a conflict - I pressed the "x" button to close the window and as a result I stopped seeing the unity interface. That is - I can not see any buttons of the left side. I went to the terminal (ctrl+alt+F1) and ran ccsm As a result I got the following error: $ ccsm /usr/lib/python2.7/site-packages/gtk-2.0/gtk/__init__.py:57: GtkWarning: could not open display warnings.warn(str(e), _gtk.Warning) Traceback (most recent call last): File "/usr/bin/ccsm", line 93, in <module> import ccm File "/usr/lib/python2.7/site-packages/ccm/__init__.py", line 1, in <module> from ccm.Conflicts import * File "/usr/lib/python2.7/site-packages/ccm/Conflicts.py", line 26, in <module> from ccm.Constants import * File "/usr/lib/python2.7/site-packages/ccm/Constants.py", line 29, in <module> CurrentScreenNum = gtk.gdk.display_get_default().get_default_screen().get_number() AttributeError: 'NoneType' object has no attribute 'get_default_screen' What should I do next? Thanks.

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  • How can I use R (Rcurl/XML packages ?!) to scrap this webpage ?

    - by Tal Galili
    Hi all, I have a (somewhat complex) webscraping challenge that I wish to accomplish and would love for some direction (to whatever level you feel like sharing) here goes: I would like to go through all the "species pages" present in this link: http://gtrnadb.ucsc.edu/ So for each of them I will go to: The species page link (for example: http://gtrnadb.ucsc.edu/Aero_pern/) And then to the "Secondary Structures" page link (for example: http://gtrnadb.ucsc.edu/Aero_pern/Aero_pern-structs.html) Inside that link I wish to scrap the data in the page so that I will have a long list containing this data (for example): chr.trna3 (1-77) Length: 77 bp Type: Ala Anticodon: CGC at 35-37 (35-37) Score: 93.45 Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCCGCCCTCGCACGGCGGAGGcCCCGGGTTCAAATCCCGGCCGGTCCACCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.... Where each line will have it's own list (inside the list for each "trna" inside the list for each animal) I remember coming across the packages Rcurl and XML (in R) that can allow for such a task. But I don't know how to use them. So what I would love to have is: 1. Some suggestion on how to build such a code. 2. And recommendation for how to learn the knowledge needed for performing such a task. Thanks for any help, Tal

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  • How to read.table with "Hebrew" column names (in R)?

    - by Tal Galili
    Hi all, I am trying to read a .txt file, with Hebrew column names, but without success. I uploaded an example file to: http://www.talgalili.com/files/aa.txt And am trying the command: read.table("http://www.talgalili.com/files/aa.txt", header = T, sep = "\t") This returns me with: X.....ª X...ª...... X...œ.... 1 12 97 6 2 123 354 44 3 6 1 3 Instead of: ??? ????? ???? 12 97 6 123 354 44 6 1 3 My output for: l10n_info() Is: $MBCS [1] FALSE $`UTF-8` [1] FALSE $`Latin-1` [1] TRUE $codepage [1] 1252 And for: Sys.getlocale() Is: [1] "LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252" Can you suggest to me what to try and change to allow me to load the file correctly ? Update: Trying to use: read.table("http://www.talgalili.com/files/aa.txt",fileEncoding ="iso8859-8") Has resulted in: V1 1 ? Warning messages: 1: In read.table("http://www.talgalili.com/files/aa.txt", fileEncoding = "iso8859-8") : invalid input found on input connection 'http://www.talgalili.com/files/aa.txt' 2: In read.table("http://www.talgalili.com/files/aa.txt", fileEncoding = "iso8859-8") : incomplete final line found by readTableHeader on 'http://www.talgalili.com/files/aa.txt' While also trying this: Sys.setlocale("LC_ALL", "en_US.UTF-8") Or this: Sys.setlocale("LC_ALL", "en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8") Get's me this: [1] "" Warning message: In Sys.setlocale("LC_ALL", "en_US.UTF-8") : OS reports request to set locale to "en_US.UTF-8" cannot be honored Any suggestion or clarification will be appreciated. Best, Tal

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  • How do you combine "Revision Control" with "WorkFlow" for R?

    - by Tal Galili
    Hello all, I remember coming across R users writing that they use "Revision control" (e.g: "Source control"), and I am curious to know: How do you combine "Revision control" with your statistical analysis WorkFlow? Two (very) interesting discussions talk about how to deal with the WorkFlow. But neither of them refer to the revision control element: http://stackoverflow.com/questions/1266279/how-to-organize-large-r-programs http://stackoverflow.com/questions/1429907/workflow-for-statistical-analysis-and-report-writing A Long Update To The Question: Following some of the people's answers, and Dirk's question in the comment, I would like to direct my question a bit more. After reading the Wiki article about "revision control" (which I was previously not familiar with), it was clear to me that when using revision control, what one does is to build a development structure of his code. This structure either leads to a "final product" or to several branches. When building something like, let's say, a website. There is usually one end product you work towards (the website), with some prototypes along the way. But when doing a statistical analysis, the work (to my view) is different. Sometimes you know where you want to get to. But more often, you explore. Explore cleaning the dataset. Explore different methods for statistical analysis, and ask various questions of your data (and I am writing this, knowing how Frank Harrell, and other experience statisticians feels about Data dredging). That is way the WorkFlow question with statistical programming is (in my view) a serious and deep question, raising many issues, The simpler ones are technical: Which revision control software do you use (and why) ? Which IDE do you use(and why) ? The more interesting question are about work process: How do you structure your files? What do you keep as a separate file and what as a revision? or asking in a different way - What should be a "branch" and what should be a "sub project" in your code? For example: When starting to explore your data, should a plot be creating and then erased because it didn't lead any where (but kept as a revision) or should there be a backup file of that path? How you solve this tension was my initial curiosity. The second question is "what might I be missing?". What rules (of thumb) should one follow so to avoid common pitfalls doing statistical programming with version control? In my intuition, I feel that statistical programming is inherently different then software development (I am writing this without being a real expert in statistical programming, and even less so in software development). That's way I am unsure which of the lessons I have read here about version control would be applicable. Thanks a lot, Tal

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  • Java Plugin a huge security risk? How to preseve Java plugin from privilege escalation?

    - by Johannes Weiß
    Installing a regular Java plugin is IMHO a real security risk for non-IT people. Normally Java applets run in a sandbox and the applet cannot do anything harmful to your computer. If an applet, however, needs to do something like read-only accessing your filesystem e.g. uploading an image, you have to give it more privileges. Usually that's ok but I think not everyone knows that you give the applet the same privileges to your computer as your user has! And that's everything Java asks you: That looks as 'harmful' as a self-signed SSL certificate on a random page where no sensitive data is exchanged. The user will click on Run! You can try that at home using JyConsole, that's Jython (Python on Java)! Simply type in python code, e.g. import os os.system('cat /etc/passwd') or worse DON'T TYPE IN THAT CODE ON YOUR COMPUTER!!! import os os.system('rm -rf ~') ... Does anyone know how you can disable the possibily of privilege escalation? And by the way, does anyone know why SUN displays only a dialog as harmless as the one shown above (the self-signed-SSL-certificate-dialog from Firefox 3 and above is much clearer here!)? Live sample from my computer:

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  • DNS down in Anonymous attack

    - by Tal Weiss
    As I'm writing this our company website and the web-service we developed are down in the big GoDaddy outage resulting from an Anonymous attack (or so says Twitter). We used GoDaddy as our registrar and we use it for DNS for some domains. Tomorrow is a new day - what can we do to mitigate such outages? Simply moving to, say, Route 53 for DNS might not be enough. Is there any way to remove this single point of failure?

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  • Windows 7 Easy Transfer does not start (Windows XP)

    - by Gerhard Weiss
    Windows 7 Easy Transfer does not start on my Windows XP system. I installed Windows 7 Easy Transfer and when I click to start it nothing happens. Not even an error message. I uninstalled and reinstalled a few times with the same results. I even tried starting it from C:\Program Files\Windows Easy Transfer 7\migwiz.exe with the same results. Nothing happens! Any one else run into this issue? Any suggestions on how to start it up differently? This is my work system so I do not know if they have it locked down. This is a Windows XP, Dell OptiPlex755 built about 3 years ago. I downloaded the 32-bit from this website: http://windows.microsoft.com/en-us/windows7/products/features/windows-easy-transfer and yes my system is 32-bit ;)

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  • How to connect to a computer that is in Sleep mode over the internet

    - by Gerhard Weiss
    How to connect to a computer that is in Sleep mode over the internet? I am using LogMeIn to connect to another computer offsite. I just installed Windows 7 RC on that system and found that the Sleep mode actually works. Currently LogMeIn does not connect when the system is in Sleep mode or Hibernate mode (that is what their error message displays when you try). Is there a way to get LogMeIn to connect to a system in Sleep mode? Is there other software that gives simliar LogMeIn functionallity (like RDP, etc.) that could be used on Windows 7 instead. I just use LMI for connecting and nothing else (no printing or file transfers). A Non-expensive options (such as free) would be better. I have seen web sites mentioning "Wake on LAN". Does anyone have some good links on how to set this up to be accessed over the internet? Edited: It looks like LogMeIn BETA might be the solution. https://beta.logmein.com/welcome/nextgen/ Has anyone tried this beta yet?

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  • Server room kit?

    - by Bill Weiss
    I feel like this is a question I've seen on here before, but some searching didn't do me any good. This looks similar, but I'm looking for stuff I leave there, not what's in my go-bag. What would you say is indispensable equipment in your server room? I've inherited one that's a bit light on stuff (except for servers, those are in there). We're in the single digits of racks, if that matters. I'm thinking of things like: Cable labeler Ethernet tester (copper at least, fibre if you need) ... ? Community wiki, because, really. [Edit] I suppose it's important to say that it's a colo facility, kind of far from the office. No food, water, etc. :(

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  • Can a DevExpress XtraGrid be filled using a a Dynamic SELECT statement string

    - by Gerhard Weiss
    Can a DevExpress XtraGrid be filled using a a Dynamic SELECT statement string? i.e. SELECT * FROM Employee or SELECT * FROM Dependents To fill our XtraGrids currently, we use a ORM that creates entities. To do this it takes a lot of steps and time. What is driving me to ask this question is we do a lot of client aquistions where we get hundreds of files. I do not want to create entities for all of these then have to create an XtraGrid for each entity. Ideally if I can just feed it a SELECT statement and the XtraGrid could render it then I could use the XtraGrid very nice data minipulation features (Filter, Group By, etc). If you have any other ideas or suggestions please to not hesitate to post them.

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  • Easiest ways to generate graphs from Python?

    - by Noah Weiss
    I'm using Python to process CSV files filled with data that I want to run calculations on, and then graph. I'm looking for a library to use that I can send processed CSV information to, or a dict of some sort, and then choose different graphing styles with. Does anyone have any recommendations?

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  • Haskell Linear Algebra Matrix Library for Arbitrary Element Types

    - by Johannes Weiß
    I'm looking for a Haskell linear algebra library that has the following features: Matrix multiplication Matrix addition Matrix transposition Rank calculation Matrix inversion is a plus and has the following properties: arbitrary element (scalar) types (in particular element types that are not Storable instances). My elements are an instance of Num, additionally the multiplicative inverse can be calculated. The elements mathematically form a finite field (??2256). That should be enough to implement the features mentioned above. arbitrary matrix sizes (I'll probably need something like 100x100, but the matrix sizes will depend on the user's input so it should not be limited by anything else but the memory or the computational power available) as fast as possible, but I'm aware that a library for arbitrary elements will probably not perform like a C/Fortran library that does the work (interfaced via FFI) because of the indirection of arbitrary (non Int, Double or similar) types. At least one pointer gets dereferenced when an element is touched (written in Haskell, this is not a real requirement for me, but since my elements are no Storable instances the library has to be written in Haskell) I already tried very hard and evaluated everything that looked promising (most of the libraries on Hackage directly state that they wont work for me). In particular I wrote test code using: hmatrix, assumes Storable elements Vec, but the documentation states: Low Dimension : Although the dimensionality is limited only by what GHC will handle, the library is meant for 2,3 and 4 dimensions. For general linear algebra, check out the excellent hmatrix library and blas bindings I looked into the code and the documentation of many more libraries but nothing seems to suit my needs :-(. Update Since there seems to be nothing, I started a project on GitHub which aims to develop such a library. The current state is very minimalistic, not optimized for speed at all and only the most basic functions have tests and therefore should work. But should you be interested in using or helping out developing it: Contact me (you'll find my mail address on my web site) or send pull requests.

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  • Python Pre-testing for exceptions when coverage fails

    - by Tal Weiss
    I recently came across a simple but nasty bug. I had a list and I wanted to find the smallest member in it. I used Python's built-in min(). Everything worked great until in some strange scenario the list was empty (due to strange user input I could not have anticipated). My application crashed with a ValueError (BTW - not documented in the official docs). I have very extensive unit tests and I regularly check coverage to avoid surprises like this. I also use Pylint (everything is integrated in PyDev) and I never ignore warnings, yet I failed to catch this bug before my users did. Is there anything I can change in my methodology to avoid these kind of runtime errors? (which would have been caught at compile time in Java / C#?). I'm looking for something more than wrapping my code with a big try-except. What else can I do? How many other build in Python functions are hiding nasty surprises like this???

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  • VirtualTreeView add roots with Threads

    - by Benjamin Weiss
    I would like to add roots to a VirtualTreeView http://www.delphi-gems.com/index.php/controls/virtual-treeview with a thread like this: function AddRoot ( p : TForm1 ) : Integer; stdcall; begin p.VirtualStringTree1.AddChild(NIL); end; var Dummy : DWORD; i : Integer; begin for i := 0 to 2000 do begin CloseHandle(CreateThread(NIL,0, @ADDROOT, Self,0, Dummy)); end; end; The reason for this is that I want to add all connections from my INDY Server to the TreeView. Indy's onexecute/onconnect get's called as a thread. So if 3+ connections come in at the same time the app crashes due to the TreeView. Same is if a client gets disconnected and I want to delete the Node. I am using Delphi7 and Indy9 Any Idea how to fix that?

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  • Mailing Address is forcing 2nd Record in CSV (DevExpress Controls)

    - by Gerhard Weiss
    My DevExpress CSV export has two lines per record. Rank Score,Prog.,Full Address 63.30 ,JIW ,1234 Whispering Pines Dr , ,Sometown MI 48316 62.80 ,JIW ,9876 Beagle Dr , ,Sometown Twp MI 48382 I would like to change it to one line because I want to do a Word Merge. (Unless Word can merge these two lines back together, which I do not thing it can do) Does the DevExpress XtraGrid ExportToText allow for this? A MemoEdit is being used by the XtraGrid and is initialized using the following code (Noticed the ControlChars.NewLine): Public ReadOnly Property FullAddress() As String Get Dim strAddress As System.Text.StringBuilder = New StringBuilder() If Not IsNullEntity Then strAddress.Append(Line1 + ControlChars.NewLine) If Not Line2 Is Nothing AndAlso Me.Line2.Length > 0 Then strAddress.Append(Line2 + ControlChars.NewLine) End If If Not Line3 Is Nothing AndAlso Me.Line3.Length > 0 Then strAddress.Append(Line3 + ControlChars.NewLine) End If strAddress.Append(String.Format("{0} {1} {2}", City, RegionCode, PostalCode)) If Me.Country <> "UNITED STATES" Then strAddress.Append(ControlChars.NewLine + Me.Country) End If End If Return strAddress.ToString End Get End Property Here is the export to CSV code: Dim saveFile As New SaveFileDialog With saveFile '.InitialDirectory = ClientManager.CurrentClient.Entity.StudentPictureDirectory .FileName = "ApplicantList.csv" .CheckPathExists = True .CheckFileExists = False .Filter = "All Files (*.*)|*.*" End With If saveFile.ShowDialog() = Windows.Forms.DialogResult.OK Then Dim PrintingTextExportOptions As New DevExpress.XtraPrinting.TextExportOptions(",", Encoding.ASCII) PrintingTextExportOptions.QuoteStringsWithSeparators = True ApplicantRankListViewsGridControl.ExportToText(saveFile.FileName, PrintingTextExportOptions) End If

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  • How do I correctly model data in SQL-based databases that have some columns in common, but also have

    - by Brandon Weiss
    For instance, let's say I have a User model. Users have things like logins, passwords, e-mail addresses, avatars, etc. But there are two types of Users that will be using this site, let's say Parents and Businesses. I need to store some different information for the Parents (e.g. childrens' names, domestic partner, salaries, etc.) than for the Businesses (e.g. industry, number of employees, etc.), but also some of it is the same, like logins and passwords. How do I correctly structure this in a SQL-based database? Thanks!

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