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• RAD Visual Web Application Creator/ Builder/ Designer for PHP

  - by inhoue

  Hi all, I want to see if any of you know a (free and open source will be ideal) tool/ app that can help build a php web application very quickly without investing too much time on writing codes, preferring drag and drop/ point and click work-flow designer for logic design (see Agile from Outsystems below). Plus, visual designer for the business logic is great since it can help a developer visualize the logic better. There are a lot of GUI builders, form builders out there, but I am looking for one app for the entire web application development process. My goal is to find an application that a team of developers can use together and use the build-in code of the app as much as possible. E.g. the app will provide a modular just for handle user login or a shopping cart; a developer just need to drag and drop the modular to the logic designer and the code will be generated. This way the functionality will be in a module and code will always be standard across developers. So if a new developer get on-board, he will just need to use the system and get up and running quickly. To explain this better: there is a lot php frameworks, e.g. cakephp, CodeIgniter, etc which I can use to help coding, but still I need to create (code) the GUI, writing quite a bit of codes. I am looking for a tool/ app that is a little more high level than those frameworks. Here is 2 examples apps I found during my google search which they have visual logic designer and gui builder in one single app. Also a single click deployment (but I need it to be php apps or at least I can deploy the (php) code to a LAMP/ WAMP server): Wavemaker: for JAVA Agile from Outsystems: for JAVA or .net (This one is really good, with work-flow drag and drop logic designer!) Talend: it is just an ETL tool, but the concept is what I want to bring up. Drag and drop, point and click logic design. Custom code can be added if it is needed, but the drag and drop process already finished the structure and most of the coding of the web app one needs to build. I want to list Adobe Flex, but it is more like a GUI designer + IDE, not exactly what I want to describe here. The drag and drop/ work-flow logic designer is a key for the app. I could go for the CMS route by learning how to extend them, but it is not that flexible for me and is a long learning curve. Anybody came across this type of app before? Or any idea of how can I find those apps? I googled them for long time, I don't see any of them for php and just few (just 2) for Java. Thanks in advance!

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• Selecting a date value from a dynamically generated listbox.

  - by ziggy

  Hi All, I have a listbox whose values are generated dynamically. The list box contains months and years and when generated looks like this. <select name="arr_dtm_mon_year" tabindex="150" class="input"> <option value=""></option> <option value="NOV 09">Nov 09</option> <option value="DEC 09">Dec 09</option> <option value="JAN 10">Jan 10</option> <option value="FEB 10">Feb 10</option> <option value="MAR 10">Mar 10</option> <option value="APR 10">Apr 10</option> <option value="MAY 10">May 10</option> <option value="JUN 10" selected>Jun 10</option> <option value="JUL 10">Jul 10</option> <option value="AUG 10">Aug 10</option> <option value="SEP 10">Sep 10</option> <option value="OCT 10">Oct 10</option> </select> The element in the listbox that is by default selected is the current month. When i use selenium IDE to select from this listbox it works fine. Here are example commands i use to select from the listbox. <tr> <td>select</td> <td>arr_dtm_mon_year</td> <td>label=Oct 10</td> </tr> <tr> <td>select</td> <td>arr_dtm_mon_year</td> <td>label=May 10</td> </tr> Now the problem i have is the values in the listbox is dynamically generated. In the above example i selected the option for "May 10". The values that are generated is a list of all previous six months and a list of all future six months. This basically means that if i rerun the test 6 months from now "May 10" will not be available from the list. Is it possible to select the value dynamically. For example can i first calculate the current month and select the value with that is current month + 1 (i.e. next month). And also how can i build the value to be selected after i have determined what the next month is. Any help will be greatly appreciated.

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• Getting instance crashes on IntelliJ IDEA with scala plugin.

  - by egervari

  I am building a scala web project using scala test, lift, jpa, hibernate, mercurial plugin, etc. I am getting instant crashes, where the ide just bombs, the window shuts down, and it gives no error messages whatsoever when I am doing any amount of copy/pasting of code. This started happening once my project got to about 100 unit tests. This problem is incredibly annoying, because when the crash happens, 30-60 seconds of activity is not saved. Even IDEA will forget which files were last opened and will forget where the cursor was, which makes it really hard to continue where you left off after the crash. A lot can happen in 60 seconds! Now, I've given up, because it seems like all sorts of things cause the IntelliJ IDEA to crash over and over. For example, if I were to copy and paste this code, to write a similar test for another collection type, it would crash shortly after: it should "cascade save and delete status messages" in { val statusMessage = new StatusMessage("message") var user = userDao.find(1).get user.addToStatusMessages(statusMessage) userDao.save(user) statusMessage.isPersistent should be (true) userDao.delete(user) statusMessageDao.find(statusMessage.id) should equal (None) } There is nothing special about this piece of code. It's code that is working just fine. However, IDEA bombs shortly after I paste something like this. For example, I might change StatusMessage to the new class I want to test cascading on... and then have to import that class into the test... and BOOM... it crashed. On windows 7, the IDEA window literally just minimizes and crashes with no warning. The next time I startup IDEA, it has no memory of what happened. Now, I've had this problem before. I posted it way back on IDEA's YouTrack. I was told to invalidate my caches. That never fixed it then, and it's not fixing it now. Please help. This error is fairly random, but it's happening constantly now. I could program for hours and not see it before... and the fact that my work just gets destroyed and I can't remember what I did during the last minute causes me to swear at my monitor at a db level higher than my stereo can go.

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• How do you combine "Revision Control" with "WorkFlow" for R?

  - by Tal Galili

  Hello all, I remember coming across R users writing that they use "Revision control" (e.g: "Source control"), and I am curious to know: How do you combine "Revision control" with your statistical analysis WorkFlow? Two (very) interesting discussions talk about how to deal with the WorkFlow. But neither of them refer to the revision control element: http://stackoverflow.com/questions/1266279/how-to-organize-large-r-programs http://stackoverflow.com/questions/1429907/workflow-for-statistical-analysis-and-report-writing A Long Update To The Question: Following some of the people's answers, and Dirk's question in the comment, I would like to direct my question a bit more. After reading the Wiki article about "revision control" (which I was previously not familiar with), it was clear to me that when using revision control, what one does is to build a development structure of his code. This structure either leads to a "final product" or to several branches. When building something like, let's say, a website. There is usually one end product you work towards (the website), with some prototypes along the way. But when doing a statistical analysis, the work (to my view) is different. Sometimes you know where you want to get to. But more often, you explore. Explore cleaning the dataset. Explore different methods for statistical analysis, and ask various questions of your data (and I am writing this, knowing how Frank Harrell, and other experience statisticians feels about Data dredging). That is way the WorkFlow question with statistical programming is (in my view) a serious and deep question, raising many issues, The simpler ones are technical: Which revision control software do you use (and why) ? Which IDE do you use(and why) ? The more interesting question are about work process: How do you structure your files? What do you keep as a separate file and what as a revision? or asking in a different way - What should be a "branch" and what should be a "sub project" in your code? For example: When starting to explore your data, should a plot be creating and then erased because it didn't lead any where (but kept as a revision) or should there be a backup file of that path? How you solve this tension was my initial curiosity. The second question is "what might I be missing?". What rules (of thumb) should one follow so to avoid common pitfalls doing statistical programming with version control? In my intuition, I feel that statistical programming is inherently different then software development (I am writing this without being a real expert in statistical programming, and even less so in software development). That's way I am unsure which of the lessons I have read here about version control would be applicable. Thanks a lot, Tal

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• How do I do distributed UML development (à la FOSS)?

  - by James A. Rosen

  I have a UML project (built in IBM's Rational System Architect/Modeler, so stored in their XML format) that has grown quite large. Additionally, it now contains several pieces that other groups would like to re-use. I come from a software development (especially FOSS) background, and am trying to understand how to use that as an analogy here. The problem I am grappling with is similar to the Fragile Base Class problem. Let me start with how it works in an object-oriented (say, Java or Ruby) FOSS ecosystem: Group 1 publishes some "core" package, say "net/smtp version 1.0" Group 2 includes Group 1's net/smtp 1.0 package in the vendor library of their software project At some point, Group 1 creates a new 2.0 branch of net/smtp that breaks backwards compatibility (say, it removes an old class or method, or moves a class from one package to another). They tell users of the 1.0 version that it will be deprecated in one year. Group 2, when they have the time, updates to net/smtp 2.0. When they drop in the new package, their compiler (or test suite, for Ruby) tells them about the incompatibility. They do have to make some manual changes, but all of the changes are in the code, in plain text, a medium with which they are quite familiar. Plus, they can often use their IDE's (or text editor's) "global-search-and-replace" function once they figure out what the fixes are. When we try to apply this model to UML in RSA, we run into some problems. RSA supports some fairly powerful refactorings, but they seem to only work if you have write access to all of the pieces. If I rename a class in one package, RSA can rename the references, but only at the same time. It's very difficult to look at the underlying source (the XML) and figure out what's broken. To fix such a problem in the RSA editor itself means tons of clicking on things -- there is no good equivalent of "global-search-and-replace," at least not after an incomplete refactor. They real sticking point seems to be that RSA assumes that you want to do all your editing using their GUI, but that makes certain operations prohibitively difficult. Does anyone have examples of open-source UML projects that have overcome this problem? What strategies do they use for communicating changes?

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• Moving from Windows to Ubuntu.

  - by djzmo

  Hello there, I used to program in Windows with Microsoft Visual C++ and I need to make some of my portable programs (written in portable C++) to be cross-platform, or at least I can release a working version of my program for both Linux and Windows. I am total newcomer in Linux application development (and rarely use the OS itself). So, today, I installed Ubuntu 10.04 LTS (through Wubi) and equipped Code::Blocks with the g++ compiler as my main weapon. Then I compiled my very first Hello World linux program, and I confused about the output program. I can run my program through the "Build and Run" menu option in Code::Blocks, but when I tried to launch the compiled application externally through a File Browser (in /media/MyNTFSPartition/MyProject/bin/Release; yes, I saved it in my NTFS partition), the program didn't show up. Why? I ran out of idea. I need to change my Windows and Microsoft Visual Studio mindset to Linux and Code::Blocks mindset. So I came up with these questions: How can I execute my compiled linux programs externally (outside IDE)? In Windows, I simply run the generated executable (.exe) file How can I distribute my linux application? In Windows, I simply distribute the executable files with the corresponding DLL files (if any) What is the equivalent of LIBs (static library) and DLLs (dynamic library) in linux and how to use them? In Windows/Visual Studio, I simply add the required libraries to the Additional Dependencies in the Project Settings, and my program will automatically link with the required static library(-ies)/DLLs. Is it possible to use the "binary form" of a C++ library (if provided) so that I wouldn't need to recompile the entire library source code? In Windows, yes. Sometimes precompiled *.lib files are provided. If I want to create a wxWidgets application in Linux, which package should I pick for Ubuntu? wxGTK or wxX11? Can I run wxGTK program under X11? In Windows, I use wxMSW, Of course. If question no. 4 is answered possible, are precompiled wxX11/wxGTK library exists out there? Haven't tried deep google search. In Windows, there is a project called "wxPack" (http://wxpack.sourceforge.net/) that saves a lot of my time. Sorry for asking many questions, but I am really confused on these linux development fundamentals. Any kind of help would be appreciated =) Thanks.

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• C++ Class Access Specifier Verbosity

  - by PolyTex

  A "traditional" C++ class (just some random declarations) might resemble the following: class Foo { public: Foo(); explicit Foo(const std::string&); ~Foo(); enum FooState { Idle, Busy, Unknown }; FooState GetState() const; bool GetBar() const; void SetBaz(int); private: struct FooPartialImpl; void HelperFunction1(); void HelperFunction2(); void HelperFunction3(); FooPartialImpl* m_impl; // smart ptr FooState m_state; bool m_bar; int m_baz; }; I always found this type of access level specification ugly and difficult to follow if the original programmer didn't organize his "access regions" neatly. Taking a look at the same snippet in a Java/C# style, we get: class Foo { public: Foo(); public: explicit Foo(const std::string&); public: ~Foo(); public: enum FooState { Idle, Busy, Unknown }; public: FooState GetState() const; public: bool GetBar() const; public: void SetBaz(int); private: struct FooPartialImpl; private: void HelperFunction1(); private: void HelperFunction2(); private: void HelperFunction3(); private: FooPartialImpl* m_impl; // smart ptr private: FooState m_state; private: bool m_bar; private: int m_baz; }; In my opinion, this is much easier to read in a header because the access specifier is right next to the target, and not a bunch of lines away. I found this especially true when working with header-only template code that wasn't separated into the usual "*.hpp/*.inl" pair. In that scenario, the size of the function implementations overpowered this small but important information. My question is simple and stems from the fact that I've never seen anyone else actively do this in their C++ code. Assuming that I don't have a "Class View" capable IDE, are there any obvious drawbacks to using this level of verbosity? Any other style recommendations are welcome!

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• How much time should it take to find the sum of all prime numbers less than 2 million?

  - by Shahensha

  I was trying to solve this Project Euler Question. I implemented the sieve of euler as a helper class in java. It works pretty well for the small numbers. But when I input 2 million as the limit it doesn't return the answer. I use Netbeans IDE. I waited for a lot many hours once, but it still didn't print the answer. When I stopped running the code, it gave the following result Java Result: 2147483647 BUILD SUCCESSFUL (total time: 2,097 minutes 43 seconds) This answer is incorrect. Even after waiting for so much time, this isn't correct. While the same code returns correct answers for smaller limits. Sieve of euler has a very simple algo given at the botton of this page. My implementation is this: package support; import java.util.ArrayList; import java.util.List; /** * * @author admin */ public class SieveOfEuler { int upperLimit; List<Integer> primeNumbers; public SieveOfEuler(int upperLimit){ this.upperLimit = upperLimit; primeNumbers = new ArrayList<Integer>(); for(int i = 2 ; i <= upperLimit ; i++) primeNumbers.add(i); generatePrimes(); } private void generatePrimes(){ int currentPrimeIndex = 0; int currentPrime = 2; while(currentPrime <= Math.sqrt(upperLimit)){ ArrayList<Integer> toBeRemoved = new ArrayList<Integer>(); for(int i = currentPrimeIndex ; i < primeNumbers.size() ; i++){ int multiplier = primeNumbers.get(i); toBeRemoved.add(currentPrime * multiplier); } for(Integer i : toBeRemoved){ primeNumbers.remove(i); } currentPrimeIndex++; currentPrime = primeNumbers.get(currentPrimeIndex); } } public List getPrimes(){ return primeNumbers; } public void displayPrimes(){ for(double i : primeNumbers) System.out.println(i); } } I am perplexed! My questions is 1) Why is it taking so much time? Is there something wrong in what I am doing? Please suggest ways for improving my coding style, if you find something wrong.

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• Php plugin to replace '->' with '.' as the member access operator ? Or even better: alternative synt

  - by Gigi

  Present day usable solution: Note that if you use an ide or an advanced editor, you could make a code template, or record a macro that inserts '->' when you press Ctrl and '.' or something. Netbeans has macros, and I have recorded a macro for this, and I like it a lot :) (just click the red circle toolbar button (start record macro),then type -> into the editor (thats all the macro will do, insert the arrow into the editor), then click the gray square (stop record macro) and assign the 'Ctrl dot' shortcut to it, or whatever shortcut you like) The php plugin: The php plugin, would also have to have a different string concatenation operator than the dot. Maybe a double dot ? Yea... why not. All it has to do is set an activation tag so that it doesnt replace / interpreter '.' as '->' for old scripts and scripts that dont intent do use this. Something like this: <php+ $obj.i = 5 ?> (notice the modified '<?php' tag to '<?php+' ) This way it wouldnt break old code. (and you can just add the '<?php+' code template to your editor and then type 'php tab' (for netbeans) and it would insert '<?php+' ) With the alternative syntax method you could even have old and new syntax cohabitating on the same page like this (I am illustrating this to show the great compatibility of this method, not because you would want to do this): <?php+ $obj.i = 5; ?> <?php $obj->str = 'a' . 'b'; ?> You could change the tag to something more explanatory, in case somebody who doesnt know about the plugin reads the script and thinks its a syntax error <?php-dot.com $obj.i = 5; ?> This is easy because most editors have code templates, so its easy to assign a shortcut to it. And whoever doesnt want the dot replacement, doesnt have to use it. These are NOT ultimate solutions, they are ONLY examples to show that solutions exist, and that arguments against replacing '->' with '.' are only excuses. (Just admit you like the arrow, its ok : ) With this potential method, nobody who doesnt want to use it would have to use it, and it wouldnt break old code. And if other problems (ahem... excuses) arise, they could be fixed too. So who can, and who will do such a thing ?

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• Can MySQL reasonably perform queries on billions of rows?

  - by haxney

  I am planning on storing scans from a mass spectrometer in a MySQL database and would like to know whether storing and analyzing this amount of data is remotely feasible. I know performance varies wildly depending on the environment, but I'm looking for the rough order of magnitude: will queries take 5 days or 5 milliseconds? Input format Each input file contains a single run of the spectrometer; each run is comprised of a set of scans, and each scan has an ordered array of datapoints. There is a bit of metadata, but the majority of the file is comprised of arrays 32- or 64-bit ints or floats. Host system |----------------+-------------------------------| | OS | Windows 2008 64-bit | | MySQL version | 5.5.24 (x86_64) | | CPU | 2x Xeon E5420 (8 cores total) | | RAM | 8GB | | SSD filesystem | 500 GiB | | HDD RAID | 12 TiB | |----------------+-------------------------------| There are some other services running on the server using negligible processor time. File statistics |------------------+--------------| | number of files | ~16,000 | | total size | 1.3 TiB | | min size | 0 bytes | | max size | 12 GiB | | mean | 800 MiB | | median | 500 MiB | | total datapoints | ~200 billion | |------------------+--------------| The total number of datapoints is a very rough estimate. Proposed schema I'm planning on doing things "right" (i.e. normalizing the data like crazy) and so would have a runs table, a spectra table with a foreign key to runs, and a datapoints table with a foreign key to spectra. The 200 Billion datapoint question I am going to be analyzing across multiple spectra and possibly even multiple runs, resulting in queries which could touch millions of rows. Assuming I index everything properly (which is a topic for another question) and am not trying to shuffle hundreds of MiB across the network, is it remotely plausible for MySQL to handle this? UPDATE: additional info The scan data will be coming from files in the XML-based mzML format. The meat of this format is in the <binaryDataArrayList> elements where the data is stored. Each scan produces = 2 <binaryDataArray> elements which, taken together, form a 2-dimensional (or more) array of the form [[123.456, 234.567, ...], ...]. These data are write-once, so update performance and transaction safety are not concerns. My naïve plan for a database schema is: runs table | column name | type | |-------------+-------------| | id | PRIMARY KEY | | start_time | TIMESTAMP | | name | VARCHAR | |-------------+-------------| spectra table | column name | type | |----------------+-------------| | id | PRIMARY KEY | | name | VARCHAR | | index | INT | | spectrum_type | INT | | representation | INT | | run_id | FOREIGN KEY | |----------------+-------------| datapoints table | column name | type | |-------------+-------------| | id | PRIMARY KEY | | spectrum_id | FOREIGN KEY | | mz | DOUBLE | | num_counts | DOUBLE | | index | INT | |-------------+-------------| Is this reasonable?

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• What alternatives do I have for source control and does GIT does that?

  - by RubberDuck

  I work as a freelancer programmer for some clients and also create apps for myself. When I work for myself, obviously I work alone. I generally don't work in a linear way. My big problems today are: I have a lot of apps that use the same classes I have developed; In the past, I put all these common classes on a directory outside all projects and included them on my apps using absolute paths, but this method sucks because by accident (if you forget) you may change a path or the disk and all projects are broken. Then I decided to copy those classes to my projects every time. Because the majority of these classes do not change frequently, I am relatively ok, but when they change, I am in hell; When I change one of these classes I have to propagate the changes to all other apps using copies of them. I have also tried to create frameworks but thanks to Apple, I cannot create frameworks for iOS and have to create libraries and bundles and create a nightmare of paths from one to the other and to the project to make that sh!t works. So, I am done with frameworks/libraries on Xcode until Xcode is a decent IDE. So, I see I need something better to manage my source code. What I need is this (I never used GIT on Xcode. I have read Apple docs but I still have these points): does git locally on Xcode allows me to deal with assets or just code? Can I have the equivalent of a "framework" (code + assets) managed by git locally? Can an entire xcodeproj be managed as a unity? I mean, Suppose I have a xcodeproj created and want GIT to manage it. How do I enable git on a project that was created without it and start designating files for management. (I have enabled git on Xcode's preferences, but all source control menu is grayed out). Is git the best option? Do I have another? Remember that my main condition is that the files should stay on the local computer. Please save me (I am a bit dramatic today). Thanks.

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• how to upload a audio file using REST webservice in Google App Engine for Java

  - by sathya

  Am using google app engine with eclipse IDE and trying to upload a audio file. I used the File Upload in Google App Engine For Java and can able to upload the file successfully. Now am planning to use REST web service for it. I had analyzed in developers.google but i failed. Can anyone suggest me how to implement REST Web services in google app engine using Eclipse. The code google provided is shown below, // file Upload.java public class Upload extends HttpServlet { private BlobstoreService blobstoreService = BlobstoreServiceFactory.getBlobstoreService(); public void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException { Map<String, BlobKey> blobs = blobstoreService.getUploadedBlobs(req); BlobKey blobKey = blobs.get("myFile"); if (blobKey == null) { res.sendRedirect("/"); } else { res.sendRedirect("/serve?blob-key=" + blobKey.getKeyString()); }}} // file Serve.java public class Serve extends HttpServlet { private BlobstoreService blobstoreService = BlobstoreServiceFactory.getBlobstoreService(); public void doGet(HttpServletRequest req, HttpServletResponse res) throws IOException { BlobKey blobKey = new BlobKey(req.getParameter("blob-key")); blobstoreService.serve(blobKey, res); }} // file index.jsp <%@ page import="com.google.appengine.api.blobstore.BlobstoreServiceFactory" %> <%@ page import="com.google.appengine.api.blobstore.BlobstoreService" %> <% BlobstoreService blobstoreService = BlobstoreServiceFactory.getBlobstoreService(); %> <form action="<%= blobstoreService.createUploadUrl("/upload") %>" method="post" enctype="multipart/form-data"> <input type="file" name="myFile"> <input type="submit" value="Submit"> </form> // web.xml <servlet> <servlet-name>Upload</servlet-name> <servlet-class>Upload</servlet-class> </servlet> <servlet> <servlet-name>Serve</servlet-name> <servlet-class>Serve</servlet-class> </servlet> <servlet-mapping> <servlet-name>Upload</servlet-name> <url-pattern>/upload</url-pattern> </servlet-mapping> <servlet-mapping> <servlet-name>Serve</servlet-name> <url-pattern>/serve</url-pattern> </servlet-mapping> Now how to provide a rest web service for the above code. Kindly suggest me an idea.

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• Error in connecting Eclipse to SQL Server

  - by user3721900

  This is the syntax error Jun 10, 2014 5:15:51 PM org.apache.catalina.core.AprLifecycleListener init INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: C:\Program Files (x86)\Java\jre7\bin;C:\Windows\Sun\Java\bin;C:\Windows\system32;C:\Windows;C:/Program Files (x86)/Java/jre7/bin/client;C:/Program Files (x86)/Java/jre7/bin;C:/Program Files (x86)/Java/jre7/lib/i386;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;C:\Program Files (x86)\AMD APP\bin\x86_64;C:\Program Files (x86)\AMD APP\bin\x86;C:\Program Files\Common Files\Microsoft Shared\Windows Live;C:\Program Files (x86)\Common Files\Microsoft Shared\Windows Live;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files (x86)\Windows Live\Shared;C:\Program Files (x86)\ATI Technologies\ATI.ACE\Core-Static;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files\Microsoft\Web Platform Installer\;C:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Pages\v1.0\;C:\Program Files (x86)\Windows Kits\8.0\Windows Performance Toolkit\;C:\Program Files\Microsoft SQL Server\110\Tools\Binn\;C:\Program Files (x86)\Microchip\MPLAB C32 Suite\bin;C:\Program Files\Java\jdk1.7.0_25\bin;C:\Program Files (x86)\Java\jdk1.7.0_03\bin;c:\Program Files (x86)\Microsoft SQL Server\100\Tools\Binn\VSShell\Common7\IDE\;c:\Program Files (x86)\Microsoft SQL Server\100\Tools\Binn\;c:\Program Files\Microsoft SQL Server\100\Tools\Binn\;c:\Program Files (x86)\Microsoft SQL Server\100\DTS\Binn\;c:\Program Files\Microsoft SQL Server\100\DTS\Binn\;C:\Program Files (x86)\Google\google_appengine\;C:\Users\Patrick\Desktop\2013-2014 2nd Sem Files\Eclipsee\eclipse;;. Jun 10, 2014 5:15:51 PM org.apache.tomcat.util.digester.SetPropertiesRule begin WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'source' to 'org.eclipse.jst.jee.server:B2B' did not find a matching property. Jun 10, 2014 5:15:51 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Jun 10, 2014 5:15:51 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Jun 10, 2014 5:15:51 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 544 ms Jun 10, 2014 5:15:51 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Jun 10, 2014 5:15:51 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.42 Jun 10, 2014 5:15:52 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Jun 10, 2014 5:15:52 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Jun 10, 2014 5:15:52 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 374 ms com.microsoft.sqlserver.jdbc.SQLServerException: Incorrect syntax near '`'. This is my code package b2b.fishermall; public class ConnectionString extends SqlStringCommands { public String getDriver(){ return "com.microsoft.sqlserver.jdbc.SQLServerDriver"; } public String getURL() { return "jdbc:sqlserver://localhost:1433;databaseName=B2B;integratedSecurity=true;"; } public String getUsername() { return ""; } public String getDbPassword() { return ""; } }

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• c++ program debugged well with Cygwin4 (under Netbeans 7.2) but not with MinGW (under QT 4.8.1)

  - by GoldenAxe

  I have a c++ program which take a map text file and output it to a graph data structure I have made, I am using QT as I needed cross-platform program and GUI as well as visual representation of the map. I have several maps in different sizes (8x8 to 4096x4096). I am using unordered_map with a vector as key and vertex as value, I'm sending hash(1) and equal functions which I wrote to the unordered_map in creation. Under QT I am debugging my program with QT 4.8.1 for desktop MinGW (QT SDK), the program works and debug well until I try the largest map of 4096x4096, then the program stuck with the following error: "the inferior stopped because it received a signal from operating system", when debugging, the program halt at the hash function which used inside the unordered_map and not as part of the insertion state, but at a getter(2). Under Netbeans IDE 7.2 and Cygwin4 all works fine (debug and run). some code info: typedef std::vector<double> coordinate; typedef std::unordered_map<coordinate const*, Vertex<Element>*, container_hash, container_equal> vertexsContainer; vertexsContainer *m_vertexes (1) hash function: struct container_hash { size_t operator()(coordinate const *cord) const { size_t sum = 0; std::ostringstream ss; for ( auto it = cord->begin() ; it != cord->end() ; ++it ) { ss << *it; } sum = std::hash<std::string>()(ss.str()); return sum; } }; (2) the getter: template <class Element> Vertex<Element> *Graph<Element>::getVertex(const coordinate &cord) { try { Vertex<Element> *v = m_vertexes->at(&cord); return v; } catch (std::exception& e) { return NULL; } } I was thinking maybe it was some memory issue at the beginning, so before I was thinking of trying Netbeans I checked it with QT on my friend pc with a 16GB RAM and got the same error. Thanks.

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• Command prompt in debug mode for Eclipse? (OpenCV + Eclipse + Win7)

  - by Tony

  I am a beginner for Eclipse. I now have Eclipse C/C++ IDE with OpenCV library running on Windows 7. So far it works after spending hours trying to get it running. But then I realize that Eclipse does not pop up a command prompt as VS2010 does while debugging. And moreover Eclipse's debug mode is just stuck in there and refuse to output anything. But if the code doesn't involve the OpenCV things it works again. Below is the code I use for testing. It captures images from webcam and output it to the screen. The infinite loop (until you press 'q') makes sure it constantly grabs new inputs from the camera. I browsed through the workspace and run the exe just compiled and it worked flawlessly. So I don't think there's anything wrong in the code (it's an example code anyway In brief, can I just pop up a command prompt window in debug mode? And why is Eclipse console stuck when the code involves some OpenCV functions? #include <stdio.h> #include <stdlib.h> #include <tchar.h> #include <cv.h> #include <cxcore.h> #include <highgui.h> #include <iostream> int _tmain(int argc, _TCHAR* argv[]) { CvCapture *capture = 0; IplImage *frame = 0; int key = 0; /* initialize camera */ capture = cvCaptureFromCAM( 0 ); /* always check */ if ( !capture ) { printf("Cannot open initialize webcam!\n"); return 1; } /* create a window for the video */ cvNamedWindow( "result", CV_WINDOW_AUTOSIZE ); while( key != 'q' ) { /* get a frame */ frame = cvQueryFrame( capture ); /* always check */ if( !frame ) break; /* display current frame */ cvShowImage( "result", frame ); /* exit if user press 'q' */ key = cvWaitKey( 1 ); } /* free memory */ cvDestroyWindow( "result" ); cvReleaseCapture( &capture ); return 0; }

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• Ubuntu: Move fsbackup backups to Amazon S3

  - by Alexander Gladysh

  I have a legacy server (Ubuntu 9.10 Karmic x86), where previous admin set up backups with fsbackup. This server lives in a VPS (under some kind of Xen), and it is low on HDD space (16 GB total). Now it came to a point, where fsbackup backups take more space than the rest of data in the system. The filesystem is 100% filled, and I already cleaned up all that I could, aside from actual backups. I do not have any experience managing fsbackup, and I do not want to break or lose the backups. Googling fsbackup gives surprisingly low quality results... Here is how my backups look like: $ sudo ls -lh /var/archives total 8.1G -rw-rw---- 1 root root 318 2011-01-06 06:26 myserver-20110106.md5 -rw-rw---- 1 root root 258 2011-01-07 06:26 myserver-20110107.md5 -rw-rw---- 1 root root 318 2011-01-08 06:26 myserver-20110108.md5 -rw-rw---- 1 root root 318 2011-01-09 06:26 myserver-20110109.md5 -rw-rw---- 1 root root 346 2011-01-10 06:43 myserver-20110110.md5 -rw-rw---- 1 root root 14M 2011-01-06 06:26 myserver-all-mysql-databases.20110106.sql.bz2 -rw-rw---- 1 root root 14M 2011-01-07 06:26 myserver-all-mysql-databases.20110107.sql.bz2 -rw-rw---- 1 root root 14M 2011-01-08 06:26 myserver-all-mysql-databases.20110108.sql.bz2 -rw-rw---- 1 root root 14M 2011-01-09 06:26 myserver-all-mysql-databases.20110109.sql.bz2 -rw-rw---- 1 root root 862 2011-01-10 06:43 myserver-all-mysql-databases.20110110.sql.bz2 -rw-rw---- 1 root root 827K 2011-01-03 06:25 myserver-etc.20110103.master.tar.gz -rw-rw---- 1 root root 16K 2011-01-06 06:25 myserver-etc.20110106.tar.gz -rw-rw---- 1 root root 16K 2011-01-07 06:25 myserver-etc.20110107.tar.gz -rw-rw---- 1 root root 16K 2011-01-08 06:25 myserver-etc.20110108.tar.gz -rw-rw---- 1 root root 16K 2011-01-09 06:25 myserver-etc.20110109.tar.gz -rw-rw---- 1 root root 827K 2011-01-10 06:25 myserver-etc.20110110.master.tar.gz -rw------- 1 root root 36K 2011-01-10 06:25 myserver-etc.incremental.bin -rw-rw---- 1 root root 29M 2011-01-03 06:25 myserver-home.20110103.master.tar.gz -rw-rw---- 1 root root 11K 2011-01-06 06:25 myserver-home.20110106.tar.gz -rw-rw---- 1 root root 14K 2011-01-07 06:25 myserver-home.20110107.tar.gz -rw-rw---- 1 root root 11K 2011-01-08 06:25 myserver-home.20110108.tar.gz -rw-rw---- 1 root root 11K 2011-01-09 06:25 myserver-home.20110109.tar.gz -rw-rw---- 1 root root 2.0M 2011-01-10 06:25 myserver-home.20110110.master.tar.gz -rw------- 1 root root 27K 2011-01-10 06:25 myserver-home.incremental.bin -rw-rw---- 1 root root 1.5G 2011-01-03 06:29 myserver-opt.20110103.master.tar.gz -rw-rw---- 1 root root 1.5M 2011-01-06 06:25 myserver-opt.20110106.tar.gz -rw-rw---- 1 root root 1.5M 2011-01-07 06:25 myserver-opt.20110107.tar.gz -rw-rw---- 1 root root 1.5M 2011-01-08 06:25 myserver-opt.20110108.tar.gz -rw-rw---- 1 root root 1.5M 2011-01-09 06:25 myserver-opt.20110109.tar.gz -rw-rw---- 1 root root 1.5G 2011-01-10 06:30 myserver-opt.20110110.master.tar.gz -rw------- 1 root root 201K 2011-01-10 06:30 myserver-opt.incremental.bin -rw-rw---- 1 root root 2.3G 2011-01-03 06:41 myserver-srv.20110103.master.tar.gz -rw-rw---- 1 root root 44M 2011-01-06 06:26 myserver-srv.20110106.tar.gz -rw-rw---- 1 root root 27M 2011-01-07 06:25 myserver-srv.20110107.tar.gz -rw-rw---- 1 root root 39M 2011-01-08 06:26 myserver-srv.20110108.tar.gz -rw-rw---- 1 root root 2.0M 2011-01-09 06:25 myserver-srv.20110109.tar.gz -rw-rw---- 1 root root 2.7G 2011-01-10 06:42 myserver-srv.20110110.master.tar.gz -rw------- 1 root root 3.4M 2011-01-10 06:42 myserver-srv.incremental.bin I'm thinking about moving backups to Amazon S3, but before that I have to free some space, so the server can work. Perhaps I can mount /var/archives to an Amazon S3 bucket somehow... Any advice?

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• High Load mysql on Debian server

  - by Oleg Abrazhaev

  I have Debian server with 32 gb memory. And there is apache2, memcached and nginx on this server. Memory load always on maximum. Only 500m free. Most memory leak do MySql. Apache only 70 clients configured, other services small memory usage. When mysql use all memory it stops. And nothing works, need mysql reboot. Mysql configured use maximum 24 gb memory. I have hight weight InnoDB bases. (400000 rows, 30 gb). And on server multithread daemon, that makes many inserts in this tables, thats why InnoDB. There is my mysql config. [mysqld] # # * Basic Settings # default-time-zone = "+04:00" user = mysql pid-file = /var/run/mysqld/mysqld.pid socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp language = /usr/share/mysql/english skip-external-locking default-time-zone='Europe/Moscow' # # Instead of skip-networking the default is now to listen only on # localhost which is more compatible and is not less secure. # # * Fine Tuning # #low_priority_updates = 1 concurrent_insert = ALWAYS wait_timeout = 600 interactive_timeout = 600 #normal key_buffer_size = 2024M #key_buffer_size = 1512M #70% hot cache key_cache_division_limit= 70 #16-32 max_allowed_packet = 32M #1-16M thread_stack = 8M #40-50 thread_cache_size = 50 #orderby groupby sort sort_buffer_size = 64M #same myisam_sort_buffer_size = 400M #temp table creates when group_by tmp_table_size = 3000M #tables in memory max_heap_table_size = 3000M #on disk open_files_limit = 10000 table_cache = 10000 join_buffer_size = 5M # This replaces the startup script and checks MyISAM tables if needed # the first time they are touched myisam-recover = BACKUP #myisam_use_mmap = 1 max_connections = 200 thread_concurrency = 8 # # * Query Cache Configuration # #more ignored query_cache_limit = 50M query_cache_size = 210M #on query cache query_cache_type = 1 # # * Logging and Replication # # Both location gets rotated by the cronjob. # Be aware that this log type is a performance killer. #log = /var/log/mysql/mysql.log # # Error logging goes to syslog. This is a Debian improvement :) # # Here you can see queries with especially long duration log_slow_queries = /var/log/mysql/mysql-slow.log long_query_time = 1 log-queries-not-using-indexes # # The following can be used as easy to replay backup logs or for replication. # note: if you are setting up a replication slave, see README.Debian about # other settings you may need to change. #server-id = 1 #log_bin = /var/log/mysql/mysql-bin.log server-id = 1 log-bin = /var/lib/mysql/mysql-bin #replicate-do-db = gate log-bin-index = /var/lib/mysql/mysql-bin.index log-error = /var/lib/mysql/mysql-bin.err relay-log = /var/lib/mysql/relay-bin relay-log-info-file = /var/lib/mysql/relay-bin.info relay-log-index = /var/lib/mysql/relay-bin.index binlog_do_db = 24avia expire_logs_days = 10 max_binlog_size = 100M read_buffer_size = 4024288 innodb_buffer_pool_size = 5000M innodb_flush_log_at_trx_commit = 2 innodb_thread_concurrency = 8 table_definition_cache = 2000 group_concat_max_len = 16M #binlog_do_db = gate #binlog_ignore_db = include_database_name # # * BerkeleyDB # # Using BerkeleyDB is now discouraged as its support will cease in 5.1.12. #skip-bdb # # * InnoDB # # InnoDB is enabled by default with a 10MB datafile in /var/lib/mysql/. # Read the manual for more InnoDB related options. There are many! # You might want to disable InnoDB to shrink the mysqld process by circa 100MB. #skip-innodb # # * Security Features # # Read the manual, too, if you want chroot! # chroot = /var/lib/mysql/ # # For generating SSL certificates I recommend the OpenSSL GUI "tinyca". # # ssl-ca=/etc/mysql/cacert.pem # ssl-cert=/etc/mysql/server-cert.pem # ssl-key=/etc/mysql/server-key.pem [mysqldump] quick quote-names max_allowed_packet = 500M [mysql] #no-auto-rehash # faster start of mysql but no tab completition [isamchk] key_buffer = 32M key_buffer_size = 512M # # * NDB Cluster # # See /usr/share/doc/mysql-server-*/README.Debian for more information. # # The following configuration is read by the NDB Data Nodes (ndbd processes) # not from the NDB Management Nodes (ndb_mgmd processes). # # [MYSQL_CLUSTER] # ndb-connectstring=127.0.0.1 # # * IMPORTANT: Additional settings that can override those from this file! # The files must end with '.cnf', otherwise they'll be ignored. # !includedir /etc/mysql/conf.d/ Please, help me make it stable. Memory used /etc/mysql # free total used free shared buffers cached Mem: 32930800 32766424 164376 0 139208 23829196 -/+ buffers/cache: 8798020 24132780 Swap: 33553328 44660 33508668 Maybe my problem not in memory, but MySQL stops every day. As you can see, cache memory free 24 gb. Thank to Michael Hampton? for correction. Load overage on server 3.5. Maybe hdd or another problem? Maybe my config not optimal for 30gb InnoDB ?

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• Linux not buffering block I/O when the device is not "in use" (i.e. mounted)

  - by Radek Hladík

  I am installing new server and I've found an interesting issue. The server is running Fedora 19 (3.11.7-200.fc19.x86_64 kernel) and is supposed to host a few KVM/Qemu virtual servers (mail server, file server, etc..). The HW is Intel(R) Xeon(R) CPU 5160 @ 3.00GHz with 16GB RAM. One of the most important features will be Samba server and we have decided to make it as virtual machine with almost direct access to the disks. So the real HDD is cached on SSD (via bcache) then raided with md and the final device is exported into the virtual machine via virtio. The virtual machine is again Fedora 19 with the same kernel. One important topic to find out is whether the virtualization layer will not introduce high overload into disk I/Os. So far I've been able to get up to 180MB/s in VM and up to 220MB/s on real HW (on the SSD disk). I am still not sure why the overhead is so big but it is more than the network can handle so I do not care so much. The interesting thing is that I've found that the disk reads are not buffered in the VM unless I create and mount FS on the disk or I use the disks somehow. Simply put: Lets do dd to read disk for the first time (the /dev/vdd is an old Raptor disk 70MB/s is its real speed): [root@localhost ~]# dd if=/dev/vdd of=/dev/null bs=256k count=10000 ; cat /proc/meminfo | grep Buffers 2621440000 bytes (2.6 GB) copied, 36.8038 s, 71.2 MB/s Buffers: 14444 kB Rereading the data shows that they are cached somewhere but not in buffers of the VM. Also the speed increased to "only" 500MB/s. The VM has 4GB of RAM (more that the test file) [root@localhost ~]# dd if=/dev/vdd of=/dev/null bs=256k count=10000 ; cat /proc/meminfo | grep Buffers 2621440000 bytes (2.6 GB) copied, 5.16016 s, 508 MB/s Buffers: 14444 kB [root@localhost ~]# dd if=/dev/vdd of=/dev/null bs=256k count=10000 ; cat /proc/meminfo | grep Buffers 2621440000 bytes (2.6 GB) copied, 5.05727 s, 518 MB/s Buffers: 14444 kB Now lets mount the FS on /dev/vdd and try the dd again: [root@localhost ~]# mount /dev/vdd /mnt/tmp [root@localhost ~]# dd if=/dev/vdd of=/dev/null bs=256k count=10000 ; cat /proc/meminfo | grep Buffers 2621440000 bytes (2.6 GB) copied, 4.68578 s, 559 MB/s Buffers: 2574592 kB [root@localhost ~]# dd if=/dev/vdd of=/dev/null bs=256k count=10000 ; cat /proc/meminfo | grep Buffers 2621440000 bytes (2.6 GB) copied, 1.50504 s, 1.7 GB/s Buffers: 2574592 kB While the first read was the same, all 2.6GB got buffered and the next read was at 1.7GB/s. And when I unmount the device: [root@localhost ~]# umount /mnt/tmp [root@localhost ~]# cat /proc/meminfo | grep Buffers Buffers: 14452 kB [root@localhost ~]# dd if=/dev/vdd of=/dev/null bs=256k count=10000 ; cat /proc/meminfo | grep Buffers 2621440000 bytes (2.6 GB) copied, 5.10499 s, 514 MB/s Buffers: 14468 kB The bcache was disabled while testing and the results are same on faster (newer) HDDs and on SSD (except for the initial read speed of course). To sum it up. When I read from the device via dd first time, it gets read from the disk. Next time I reread it gets cached in the host but not in the guest (thats actually the same issue, more on that later). When I mount the filesystem but try to read the device directly it gets cached in VM (via buffers). As soon as I stop "using" it, buffers are discarded and the device is not cached anymore in the VM. When I looked into buffers value on the host I realized that the situation is the same. The block I/O gets buffered only when the disk is in use, in this case it means "exported to a VM". On host, after all the measurement done: 3165552 buffers On the host, after the VM shutdown: 119176 buffers I know it is not important as the disks will be mounted all the time but I am curious and I would like to know why it is working like this.

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• Windows 7: How to place SuperFetch cache on an SSD?

  - by Ian Boyd

  I'm thinking of adding a solid state drive (SSD) to my existing Windows 7 installation. I know I can (and should) move my paging file to the SSD: Should the pagefile be placed on SSDs? Yes. Most pagefile operations are small random reads or larger sequential writes, both of which are types of operations that SSDs handle well. In looking at telemetry data from thousands of traces and focusing on pagefile reads and writes, we find that Pagefile.sys reads outnumber pagefile.sys writes by about 40 to 1, Pagefile.sys read sizes are typically quite small, with 67% less than or equal to 4 KB, and 88% less than 16 KB. Pagefile.sys writes are relatively large, with 62% greater than or equal to 128 KB and 45% being exactly 1 MB in size. In fact, given typical pagefile reference patterns and the favorable performance characteristics SSDs have on those patterns, there are few files better than the pagefile to place on an SSD. What I don't know is if I even can put a SuperFetch cache (i.e. ReadyBoost cache) on the solid state drive. I want to get the benefit of Windows being able to cache gigabytes of frequently accessed data on a relativly small (e.g. 30GB) solid state drive. This is exactly what SuperFetch+ReadyBoost (or SuperFetch+ReadyDrive) was designed for. Will Windows offer (or let) me place a ReadyBoost cache on a solid state flash drive connected via SATA? A problem with the ReadyBoost cache over the ReadyDrive cache is that the ReadyBoost cache does not survive between reboots. The cache is encrypted with a per-session key, making its existing contents unusable during boot and SuperFetch pre-fetching during login. Update One I know that Windows Vista limited you to only one ReadyBoost.sfcache file (I do not know if Windows 7 removed that limitation): Q: Can use use multiple devices for EMDs? A: Nope. We've limited Vista to one ReadyBoost per machine Q: Why just one device? A: Time and quality. Since this is the first revision of the feature, we decided to focus on making the single device exceptional, without the difficulties of managing multiple caches. We like the idea, though, and it's under consideration for future versions. I also know that the 4GB limit on the cache file was a limitation of the FAT filesystem used on most USB sticks - an SSD drive would be formatted with NTFS: Q: What's the largest amount of flash that I can use for ReadyBoost? A: You can use up to 4GB of flash for ReadyBoost (which turns out to be 8GB of cache w/ the compression) Q: Why can't I use more than 4GB of flash? A: The FAT32 filesystem limits our ReadyBoost.sfcache file to 4GB Can a ReadyBoost cache on an NTFS volume be larger than 4GB? Update Two The ReadyBoost cache is encrypted with a per-boot session key. This means that the cache has to be re-built after each boot, and cannot be used to help speed boot times, or latency from login to usable. Windows ReadyDrive technology takes advantage of non-volatile (NV) memory (i.e. flash) that is incorporated with some hybrid hard drives. This flash cache can be used to help Windows boot, or resume from hibernate faster. Will Windows 7 use an internal SSD drive as a ReadyBoost/*ReadyDrive*/SuperFetch cache? Is it possible to make Windows store a SuperFetch cache (i.e. ReadyBoost) on a non-removable SSD? Is it possible to not encrypt the ReadyBoost cache, and if so will Windows 7 use the cache at boot time? See also SuperUser.com: ReadyBoost + SSD = ? Windows 7 - ReadyBoost & SSD drives? Support and Q&A for Solid-State Drives Using SDD as a cache for HDD, is there a solution? Performance increase using SSD for paging/fetch/cache or ReadyBoost? (Win7) Windows 7 To Boost SSD Performance How to Disable Nonvolatile Caching

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• Did a recent WinXP update break CD/DVD read speeds? SP2/SP3

  - by quack quixote

  I have two systems with fresh installations of Windows XP Pro SP3 (SP3 slipstreamed into the installer; fully updated after install). One's a refurbished 2.4GHz Pentium4 system; the other is a new 1.6GHz Atom330 build. Both have brand-new dual-layer CD/DVD burners (one's a LiteOn IDE, the other an LG SATA). Both take a really looooong time to read a single-layer DVD in Windows with Cygwin tools. Specifically, 40 minutes or more. I burn backup data to single-layer DVD+/-R and use MD5 hashes for data verification (made with the standard md5sum tool in Unix or Cygwin). The hashes are burned to disc with the data files, and I use this command to verify: $ cd /path/to/disc/mountpoint ; time md5sum -c < md5.txt Here's how long that takes to run on a full single-layer DVD+/-R disc: Old system (WinXP SP2, 1.8GHz Athlon 2500+, last summer): ~10 minutes Old system (Ubuntu 9.04, 1.8GHz Athlon 2500+): ~10 minutes Old system (Debian 5, dual 550MHz P3): ~10 minutes New Pentium4 system (running Ubuntu 9.04): ~5 minutes New Pentium4 system (running WinXP SP3, file copy from Win Explorer): ~6 minutes New Atom330 system (running WinXP SP3, file copy from Win Explorer): ~6 minutes Now the weird stuff: Old system (WinXP SP2, 1.8GHz Athlon 2500+, today): ~25 minutes New Pentium4 system (running WinXP SP3, read from Cygwin): ~40-50 minutes (?!!) New Atom330 system (running WinXP SP3, read from Cygwin): ~40 minutes (can do it in ~30 minutes ...if i have another program spin up the drive first) Since both systems will copy files in 6 minutes using Windows Explorer, I know it's not a hardware problem. Windows just never spins up the drive during the Cygwin read, so it stays super-slow the whole time. Other programs like EAC and DVD Decrypter seem to spin up the disc just fine during their processing. DMA is enabled on both systems. (Can confirm in Windows' Device Manager on the Atom330, not on the P4.) Nero's DriveSpeed tool doesn't seem to have any effect. Copy times are comparable from commandline with Windows' xcopy. Copying with Cygwin's cp looks more like the problem state -- it will spin up the drive for a short time, never reaches full speed, and lets it spin back down again for most of the copy. What I need is to get full read speeds from Cygwin. Is this a known issue with SP3 or some other recent Windows update? Any other ideas? Update: More testing; Windows will spin up the drive when data is copied with Windows tools, but not when read in place or copied with Cygwin tools. It doesn't make sense to me that Windows spins up the drive for copying, but not for other reads. Might be more of a Cygwin problem? Update 2: GUI activity is sluggish during the problem state -- during the Cygwin verifies, there's a slight but noticable delay when dragging windows or icons around on the desktop, switching windows, Alt-Tabbing through open applications, opening new windows, etc. It reminds me of the delay when opening a Windows Explorer window on My Computer just after inserting a DVD. I've tried updating Cygwin (from 1.5.x to 1.7.x), but no change in the problem behavior. I've also noticed this issue occurs on WinXP SP2, but it's not exactly the same -- some spin-up occurs, so the read happens in ~25-30 minutes instead of 40+. The SP2 system used to run the verifies in ~10 minutes, and when it first changed (not sure exactly when, maybe in late November or early December 2009) I thought it was dying hardware. This is why I suspect an official update of breaking this functionality; this has worked for years on that SP2 box.

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• Does this prove a network bandwidth bottleneck?

  - by Yuji Tomita

  I've incorrectly assumed that my internal AB testing means my server can handle 1k concurrency @3k hits per second. My theory at at the moment is that the network is the bottleneck. The server can't send enough data fast enough. External testing from blitz.io at 1k concurrency shows my hits/s capping off at 180, with pages taking longer and longer to respond as the server is only able to return 180 per second. I've served a blank file from nginx and benched it: it scales 1:1 with concurrency. Now to rule out IO / memcached bottlenecks (nginx normally pulls from memcached), I serve up a static version of the cached page from the filesystem. The results are very similar to my original test; I'm capped at around 180 RPS. Splitting the HTML page in half gives me double the RPS, so it's definitely limited by the size of the page. If I internally ApacheBench from the local server, I get consistent results of around 4k RPS on both the Full Page and the Half Page, at high transfer rates. Transfer rate: 62586.14 [Kbytes/sec] received If I AB from an external server, I get around 180RPS - same as the blitz.io results. How do I know it's not intentional throttling? If I benchmark from multiple external servers, all results become poor which leads me to believe the problem is in MY servers outbound traffic, not a download speed issue with my benchmarking servers / blitz.io. So I'm back to my conclusion that my server can't send data fast enough. Am I right? Are there other ways to interpret this data? Is the solution/optimization to set up multiple servers + load balancing that can each serve 180 hits per second? I'm quite new to server optimization, so I'd appreciate any confirmation interpreting this data. Outbound traffic Here's more information about the outbound bandwidth: The network graph shows a maximum output of 16 Mb/s: 16 megabits per second. Doesn't sound like much at all. Due to a suggestion about throttling, I looked into this and found that linode has a 50mbps cap (which I'm not even close to hitting, apparently). I had it raised to 100mbps. Since linode caps my traffic, and I'm not even hitting it, does this mean that my server should indeed be capable of outputting up to 100mbps but is limited by some other internal bottleneck? I just don't understand how networks at this large of a scale work; can they literally send data as fast as they can read from the HDD? Is the network pipe that big? In conclusion 1: Based on the above, I'm thinking I can definitely raise my 180RPS by adding an nginx load balancer on top of a multi nginx server setup at exactly 180RPS per server behind the LB. 2: If linode has a 50/100mbit limit that I'm not hitting at all, there must be something I can do to hit that limit with my single server setup. If I can read / transmit data fast enough locally, and linode even bothers to have a 50mbit/100mbit cap, there must be an internal bottleneck that's not allowing me to hit those caps that I'm not sure how to detect. Correct? I realize the question is huge and vague now, but I'm not sure how to condense it. Any input is appreciated on any conclusion I've made.

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• ls hangs for a certain directory

  - by Jakobud

  There is a particular directory (/var/www), that when I run ls (with or without some options), the command hangs and never completes. There is only about 10-15 files and directories in /var/www. Mostly just text files. Here is some investigative info: [me@server www]$ df . Filesystem Size Used Avail Use% Mounted on /dev/mapper/vg_dev-lv_root 50G 19G 29G 40% / [me@server www]$ df -i . Filesystem Inodes IUsed IFree IUse% Mounted on /dev/mapper/vg_dev-lv_root 3.2M 435K 2.8M 14% / find works fine. Also I can type in cd /var/www/ and press TAB before pressing enter and it will successfully tab-completion list of all files/directories in there: [me@server www]$ cd /var/www/ cgi-bin/ create_vhost.sh html/ manual/ phpMyAdmin/ scripts/ usage/ conf/ error/ icons/ mediawiki/ rackspace sqlbuddy/ vhosts/ [me@server www]$ cd /var/www/ I have had to kill my terminal sessions several times because of the ls hanging: [me@server ~]$ ps | grep ls gdm 6215 0.0 0.0 488152 2488 ? S<sl Jan18 0:00 /usr/bin/pulseaudio --start --log-target=syslog root 23269 0.0 0.0 117724 1088 ? D 18:24 0:00 ls -Fh --color=always -l root 23477 0.0 0.0 117724 1088 ? D 18:34 0:00 ls -Fh --color=always -l root 23579 0.0 0.0 115592 820 ? D 18:36 0:00 ls -Fh --color=always root 23634 0.0 0.0 115592 816 ? D 18:38 0:00 ls -Fh --color=always root 23740 0.0 0.0 117724 1088 ? D 18:40 0:00 ls -Fh --color=always -l me 23770 0.0 0.0 103156 816 pts/6 S+ 18:41 0:00 grep ls kill doesn't seem to have any affect on the processes, even as sudo. What else should I do to investigate this problem? It just randomly started happening today. UPDATE dmesg is a big list of things, mostly related to an external USB HDD that I've mounted too many times and the max mount count has been reached, but that is an un-related problem I think. Near the bottom of dmesg I'm seeing this: INFO: task ls:23579 blocked for more than 120 seconds. "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. ls D ffff88041fc230c0 0 23579 23505 0x00000080 ffff8801688a1bb8 0000000000000086 0000000000000000 ffffffff8119d279 ffff880406d0ea20 ffff88007e2c2268 ffff880071fe80c8 00000003ae82967a ffff880407169ad8 ffff8801688a1fd8 0000000000010518 ffff880407169ad8 Call Trace: [<ffffffff8119d279>] ? __find_get_block+0xa9/0x200 [<ffffffff814c97ae>] __mutex_lock_slowpath+0x13e/0x180 [<ffffffff814c964b>] mutex_lock+0x2b/0x50 [<ffffffff8117a4d3>] do_lookup+0xd3/0x220 [<ffffffff8117b145>] __link_path_walk+0x6f5/0x1040 [<ffffffff8117a47d>] ? do_lookup+0x7d/0x220 [<ffffffff8117bd1a>] path_walk+0x6a/0xe0 [<ffffffff8117beeb>] do_path_lookup+0x5b/0xa0 [<ffffffff8117cb57>] user_path_at+0x57/0xa0 [<ffffffff81178986>] ? generic_readlink+0x76/0xc0 [<ffffffff8117cb62>] ? user_path_at+0x62/0xa0 [<ffffffff81171d3c>] vfs_fstatat+0x3c/0x80 [<ffffffff81258ae5>] ? _atomic_dec_and_lock+0x55/0x80 [<ffffffff81171eab>] vfs_stat+0x1b/0x20 [<ffffffff81171ed4>] sys_newstat+0x24/0x50 [<ffffffff810d40a2>] ? audit_syscall_entry+0x272/0x2a0 [<ffffffff81013172>] system_call_fastpath+0x16/0x1b And also, strace ls /var/www/ spits out a whole BUNCH of information. I don't know what is useful here... The last handful of lines: ioctl(1, SNDCTL_TMR_TIMEBASE or TCGETS, {B38400 opost isig icanon echo ...}) = 0 ioctl(1, TIOCGWINSZ, {ws_row=68, ws_col=145, ws_xpixel=0, ws_ypixel=0}) = 0 stat("/var/www/", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0 open("/var/www/", O_RDONLY|O_NONBLOCK|O_DIRECTORY|O_CLOEXEC) = 3 fcntl(3, F_GETFD) = 0x1 (flags FD_CLOEXEC) getdents(3, /* 16 entries */, 32768) = 488 getdents(3, /* 0 entries */, 32768) = 0 close(3) = 0 fstat(1, {st_mode=S_IFCHR|0620, st_rdev=makedev(136, 9), ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f3093b18000 write(1, "cgi-bin conf create_vhost.sh\te"..., 125cgi-bin conf create_vhost.sh error html icons manual mediawiki phpMyAdmin rackspace scripts sqlbuddy usage vhosts ) = 125 close(1) = 0 munmap(0x7f3093b18000, 4096) = 0 close(2) = 0 exit_group(0) = ?

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• Performance issues when using SSD for a developer notebook (WAMP/LAMP stack)?

  - by András Szepesházi

  I'm a web application developer using my notebook as a standalone development environment (WAMP stack). I just switched from a Core2-duo Vista 32 bit notebook with 2Gb RAM and SATA HDD, to an i5-2520M Win7 64 bit with 4Gb RAM and 128 GB SDD (Corsair P3 128). My initial experience was what I expected, fast boot, quick load of all the applications (Eclipse takes now 5 seconds as opposed to 30s on my old notebook), overall great experience. Then I started to build up my development stack, both as LAMP (using VirtualBox with a debian guest) and WAMP (windows native apache + mysql + php). I wanted to compare those two. This still all worked great out, then I started to pull in my projects to these stacks. And here came the nasty surprise, one of those projects produced a lot worse response times than on my old notebook (that was true for both the VirtualBox and WAMP stack). Apache, php and mysql configurations were practically identical in all environments. I started to do a lot of benchmarking and profiling, and here is what I've found: All general benchmarks (Performance Test 7.0, HDTune Pro, wPrime2 and some more) gave a big advantage to the new notebook. Nothing surprising here. Disc specific tests showed that read/write operations peaked around 380M/160M for the SSD, and all the different sized block operations also performed very well. Started apache performance benchmarking with Apache Benchmark for a small static html file (10 concurrent threads, 500 iterations). Old notebook: min 47ms, median 111ms, max 156ms New WAMP stack: min 71ms, median 135ms, max 296ms New LAMP stack (in VirtualBox): min 6ms, median 46ms, max 175ms Right here I don't get why the native WAMP stack performed so bad, but at least the LAMP environment brought the expected speed. Apache performance measurement for non-cached php content. The php runs a loop of 1000 and generates sha1(uniqid()) inisde. Again, 10 concurrent threads, 500 iterations were used for the benchmark. Old notebook: min 0ms, median 39ms, max 218ms New WAMP stack: min 20ms, median 61ms, max 186ms New LAMP stack (in VirtualBox): min 124ms, median 704ms, max 2463ms What the hell? The new LAMP performed miserably, and even the new native WAMP was outperformed by the old notebook. php + mysql test. The test consists of connecting to a database and reading a single record form a table using INNER JOIN on 3 more (indexed) tables, repeated 100 times within a loop. Databases were identical. 10 concurrent threads, 100 iterations were used for the benchmark. Old notebook: min 1201ms, median 1734ms, max 3728ms New WAMP stack: min 367ms, median 675ms, max 1893ms New LAMP stack (in VirtualBox): min 1410ms, median 3659ms, max 5045ms And the same test with concurrency set to 1 (instead of 10): Old notebook: min 1201ms, median 1261ms, max 1357ms New WAMP stack: min 399ms, median 483ms, max 539ms New LAMP stack (in VirtualBox): min 285ms, median 348ms, max 444ms Strictly for my purposes, as I'm using a self contained development environment (= low concurrency) I could be satisfied with the second test's result. Though I have no idea why the VirtualBox environment performed so bad with higher concurrency. Finally I performed a test of including many php files. The application that I mentioned at the beginning, the one that was performing so bad, has a heavy bootstrap, loads hundreds of small library and configuration files while initializing. So this test does nothing else just includes about 100 files. Concurrency set to 1, 100 iterations: Old notebook: min 140ms, median 168ms, max 406ms New WAMP stack: min 434ms, median 488ms, max 604ms New LAMP stack (in VirtualBox): min 413ms, median 1040ms, max 1921ms Even if I consider that VirtualBox reached those files via shared folders, and that slows things down a bit, I still don't see how could the old notebook outperform so heavily both new configurations. And I think this is the real root of the slow performance, as the application uses even more includes, and the whole bootstrap will occur several times within a page request (for each ajax call, for example). To sum it up, here I am with a brand new high-performance notebook that loads the same page in 20 seconds, that my old notebook can do in 5-7 seconds. Needless to say, I'm not a very happy person right now. Why do you think I experience these poor performance values? What are my options to remedy this situation?

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• Cheapest way to connect 20-24 Sata II HDDs in a budget storage server?

  - by Joe Hopfgartner

  I need to assemble a high density storage server for as cheap as possible. It's been a while for me and the last systems I integrated didn't even have Sata yet... During my Research I of course stumbled about Nexsan SATA Beast, the BackBlaze storage Pods as well as some ridiculously overpriced HP Proliant or Dell storage solutions. Finally I choose Norco cases as the way to go. My eye is set on the RPC-4020, which is a 4U 19" Rackmount case with 20 Hot Swap 3.5" SATA/SAS Hdd trays (Backplanes included) and room for two 2.5" OS drives as well as a Slim Line CD-Rom. The backplanes connect with a single SATA port for each drive, so there are 20 internal SATA ports to to be connected. They also have redundant power ports which I think is quite nice. The cheapest price I have found is 290$ + 40$ shipping. In europe the cheapest unfortunately is 370€ (500$) + 40 € shipping... A nice alternative would be the RPC-4224 which has SFF-8087 Mini SAS connectors that bundle 4 SATA trays each. But it doesn't seem to be available in Europe (where i am) anywhere. So here comes my problem: What Mainboard/Controller to choose to connect them for as cheap as possible while still having nice data rates? I have to say that the server is intended as a Storage server with 1gps connectivity and the data transfer will be distributed very evenly across all drives. I also don't require any raid functionality. This is all done at application level, I just need JBOD. So for example if I go for the RPC 4020 Model I need to connect 20 Storage + 1 OS + 1 CDROM Sata ports. I searched a bit and stumbled across this very low priced controller: http://www.intel.com/products/server/raid-controllers/SASWT4I/SASWT4I-overview.htm They sell it for 115 € here and the specs say it can control up to 122 hard discs and has 4 Mini SAS connectors. So I would use 4 Mini SAS 36pin - 4 SATA 7pin cables to connect 4 SATA drives to each port and choose a Mainboard taht has 6 SATA on board (for example this one) and hurray, I can connect my 22 SATA devices for as low as about ~ 220 EUR (cpu, ram, psu, case not counted) Question: WOULD THAT WORK? And if not, why? 2nd Question: If I go for the 4220 or 4224 Model, I have internal Mini SAS connectors. Am I right in assuming that the backplane than acts as a "SAS Expander"? And can I just plug these SAS connectors into any SAS port I can find on my controller / mainboard or are there certain requirements? I know that SATA port multipliers only work with controllers that are ready for that. But isn't this expansion already implemented in the SAS standard? I am sorry that this is a very broad question, but I really spent the last week reading up and it seems to be not so clear! Especially all the controlling hardware specifications! 3rd Question: A lot of hardware specs feature "internal channels" and "internal connectors". The connecors are the physical numbers of places where I can plug a cable in. I got that. But are the "internal channels" always the maximum numbers of physical drives that can be used in the end? Or can I enhance this further by Expanders/Fanouts? 4th and last question: What do you think about the setup so far? Do you know any good alternatives? Maby I am completely going the wrong way and some DAS would be way better? Are there any comparable chassis available in europe? Please feel free to say whatever you think is relevant to the subject!

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• Cannot create zpool, how to get rid of intel raid volume?

  - by nagylzs

  This is a FreeBSD 9.1 amd64 computer. It has 5 disks installed. The ada0 and ada1 disks are used with a hw raid to provide the root filesystem: root@gw:/home/gandalf # ls /dev | grep ada ada0 ada1 ada2 ada3 ada4 root@gw:/home/gandalf # zpool status pool: zroot state: ONLINE scan: none requested config: NAME STATE READ WRITE CKSUM zroot ONLINE 0 0 0 raid/r0s1a ONLINE 0 0 0 errors: No known data errors I want to create a raidz pool for the remaining disks: root@gw:/home/gandalf # zpool create -f data raidz1 ada2 ada3 ada4 cannot create 'data': one or more devices is currently unavailable root@gw:/home/gandalf # dmesg | grep ada2 ada2 at ata4 bus 0 scbus6 target 0 lun 0 ada2: <WDC WD20EARS-00MVWB0 51.0AB51> ATA-8 SATA 2.x device ada2: 300.000MB/s transfers (SATA 2.x, UDMA5, PIO 8192bytes) ada2: 1907729MB (3907029168 512 byte sectors: 16H 63S/T 16383C) ada2: Previously was known as ad16 root@gw:/home/gandalf # dmesg | grep ada3 ada3 at ata5 bus 0 scbus7 target 0 lun 0 ada3: <SAMSUNG HD103UJ 1AA01118> ATA-7 SATA 2.x device ada3: 300.000MB/s transfers (SATA 2.x, UDMA5, PIO 8192bytes) ada3: 953868MB (1953523055 512 byte sectors: 16H 63S/T 16383C) ada3: Previously was known as ad18 GEOM_RAID: Intel-fb8732fa: Disk ada3 state changed from NONE to ACTIVE. GEOM_RAID: Intel-fb8732fa: Subdisk Volume0:0-ada3 state changed from NONE to ACTIVE. root@gw:/home/gandalf # dmesg | grep ada4 ada4 at ata6 bus 0 scbus8 target 0 lun 0 ada4: <TOSHIBA DT01ACA100 MS2OA750> ATA-8 SATA 3.x device ada4: 300.000MB/s transfers (SATA 2.x, UDMA5, PIO 8192bytes) ada4: 953869MB (1953525168 512 byte sectors: 16H 63S/T 16383C) ada4: Previously was known as ad20 root@gw:/home/gandalf # dmesg | grep GEOM_RAID Aha, so ada3 is already part of another raid volume? Let's see: root@gw:/home/gandalf # dmesg | grep GEOM_RAID GEOM_RAID: SiI-130628113902: Array SiI-130628113902 created. GEOM_RAID: SiI-130628113902: Disk ada0 state changed from NONE to ACTIVE. GEOM_RAID: SiI-130628113902: Subdisk SiI Raid1 Set:1-ada0 state changed from NONE to STALE. GEOM_RAID: SiI-130628113902: Disk ada1 state changed from NONE to ACTIVE. GEOM_RAID: SiI-130628113902: Subdisk SiI Raid1 Set:0-ada1 state changed from NONE to STALE. GEOM_RAID: SiI-130628113902: Array started. GEOM_RAID: SiI-130628113902: Subdisk SiI Raid1 Set:0-ada1 state changed from STALE to ACTIVE. GEOM_RAID: SiI-130628113902: Subdisk SiI Raid1 Set:1-ada0 state changed from STALE to RESYNC. GEOM_RAID: SiI-130628113902: Subdisk SiI Raid1 Set:1-ada0 rebuild start at 0. GEOM_RAID: SiI-130628113902: Volume SiI Raid1 Set state changed from STARTING to SUBOPTIMAL. GEOM_RAID: SiI-130628113902: Provider raid/r0 for volume SiI Raid1 Set created. GEOM_RAID: Intel-fb8732fa: Array Intel-fb8732fa created. GEOM_RAID: Intel-fb8732fa: Force array start due to timeout. GEOM_RAID: Intel-fb8732fa: Disk ada3 state changed from NONE to ACTIVE. GEOM_RAID: Intel-fb8732fa: Subdisk Volume0:0-ada3 state changed from NONE to ACTIVE. GEOM_RAID: Intel-fb8732fa: Array started. GEOM_RAID: Intel-fb8732fa: Volume Volume0 state changed from STARTING to DEGRADED. GEOM_RAID: Intel-fb8732fa: Provider raid/r1 for volume Volume0 created. root@gw:/home/gandalf # Yes, indeed. I want to get rid of raid/r1 completely. However, the controller was already set to "IDE" mode in the BIOS. So why it is creating a raid volume??? I have also tried overwritting the first 16k data of ada3 and reboot the computer, but it did not help. How can I delete /dev/raid/r1 ? root@gw:/home/gandalf # graid status Name Status Components raid/r0 SUBOPTIMAL ada0 (ACTIVE (RESYNC 4%)) ada1 (ACTIVE (ACTIVE)) raid/r1 DEGRADED ada3 (ACTIVE (ACTIVE)) root@gw:/home/gandalf # graid delete raid/r1 graid: Array 'raid/r1' not found. root@gw:/home/gandalf # graid delete /dev/raid/r1 graid: Array '/dev/raid/r1' not found. root@gw:/home/gandalf # Thanks

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