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  • Generic dataset handling library

    - by Pep.
    Hello, I want to build a generic Perl module for handling and analysing biomedical character separated datasets and which can, most certain, be used on any kind of datasets that contain a mixture of categorical (A,B,C,..) and continuous (1.2,3,881..) and identifier (XXX1,XXX2...). The plan is to have people initialize the module and then use some arguments to point to the data file(s), the place were the analysis reports should be placed and the structure of the data. By structure of data I mean which variable is in which place and its name/type. And this is where I need some enlightenment. I am baffled how to do this in a clean way. Obviously, having people create a simple schema file, be it XML or some other format would be the cleanest but maybe not all people enjoy doing something like this. The solutions I can think of are: Create a configuration file in XML or similar and with a prespecified format. Pass the information during initialization of the module. Use the first row of the data as headers and try to guess types (ouch) Surely there must be a "canonical" way of doing this that is also usable and efficient. Thanks p.

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  • Storing a bucket of numbers in an efficient data structure

    - by BlitzKrieg
    I have a buckets of numbers e.g. - 1 to 4, 5 to 15, 16 to 21, 22 to 34,.... I have roughly 600,000 such buckets. The range of numbers that fall in each of the bucket varies. I need to store these buckets in a suitable data structure so that the lookups for a number is as fast as possible. So my question is what is the suitable data structure and a sorting mechanism for this type of problem. Thanks in advance

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  • Why should structure names have a typedef?

    - by Jay
    I have seen source codes always having a typedef for a structure and using the same everywhere instead of using the structure name as "struct sname" etc directly? What is the reason behind this? Are there any advantages in doing this?

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  • Point data structure for a sketching application

    - by bebraw
    I am currently developing a little sketching application based on HTML5 Canvas element. There is one particular problem I haven't yet managed to find a proper solution for. The idea is that the user will be able to manipulate existing stroke data (points) quite freely. This includes pushing point data around (ie. magnet tool) and manipulating it at whim otherwise (ie. altering color). Note that the current brush engine is able to shade by taking existing stroke data in count. It's a quick and dirty solution as it just iterates the points in the current stroke and checks them against a distance rule. Now the problem is how to do this in a nice manner. It is extremely important to be able to perform efficient queries that return all points within given canvas coordinate and radius. Other features, such as space usage, should be secondary to this. I don't mind doing some extra processing between strokes while the user is not painting. Any pointers are welcome. :)

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  • Algorithm for non-contiguous netmask match

    - by Gianluca
    Hi, I have to write a really really fast algorithm to match an IP address to a list of groups, where each group is defined using a notation like 192.168.0.0/252.255.0.255. As you can see, the bitmask can contain zeros even in the middle, so the traditional "longest prefix match" algorithms won't work. If an IP matches two groups, it will be assigned to the group containing most 1's in the netmask. I'm not working with many entries (let's say < 1000) and I don't want to use a data structure requiring a large memory footprint (let's say 1-2 MB), but it really has to be fast (of course I can't afford a linear search). Do you have any suggestion? Thanks guys. UPDATE: I found something quite interesting at http://www.cse.usf.edu/~ligatti/papers/grouper-conf.pdf, but it's still too memory-hungry for my utopic use case

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  • Revisions: algorithm and data structure

    - by SODA
    Hi, I need ideas for structuring and processing data with revisions. For example, I have a database of objects (e.g. cars). Each object has a number of properties, which can be arbitrary, so there's no a set schema to describe these objects. These objects are probably saved as key-value pairs. Now I need to change property of an object. I don't want to completely rewrite it - I want to be able to go back and see history of changes to these properties, that's why I want to add new property and keep the old one (so I guess a timestamp would do the job of telling which property is the latest). At the same time I want to be able to get info about any object in a snap, with only latest versions of each of the properties. Any ideas what would be the best approach? At least please point me in the right direction. Thanks!

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  • Strategy to structure a search index in a relational database

    - by neilc
    I am interested in suggestions for building an efficient and robust structure for indexing products in a new database I am building (i'm using MySql) When a product is entered through the form there are three parts I am interested in indexing for searching purposes. The product title The product description Tags The most important is title, followed by tags, followed by the description. I was thinking of using the following structure CREATE TABLE `searchindex` ( `id` INT NOT NULL , `word` VARCHAR( 255 ) NOT NULL , `weighting` INT NOT NULL , `product_id` INT NOT NULL , PRIMARY KEY ( `id` ) ) Then each time a product is created I would split apart the title, description and tags (removing common words) and award them a weighting. Then it is trivial to select out the words and corresponding products and order them by weighting. Is there a better way to do this? I would be worried that this strategy would slow down over time and as the database filled up.

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  • How to manupilate data in VIew using Asp.Net Mvc RC 2?

    - by Picflight
    I have a table [Users] with the following columns: INT SmallDateTime Bit Bit [UserId], [BirthDate], [Gender], [Active] Gender and Active are Bit that hold either 0 or 1. I am displaying this data in a table on my View. For the Gender I want to display 'Male' or 'Female', how and where do I manipulate the 1's and 0's? Is it done in the repository where I fetch the data or in the View? For the Active column I want to show a checkBox that will AutoPostBack on selection change and update the Active filed in the Database. How is this done without Ajax or jQuery?

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  • What is the best data structure and algorithm for comparing a list of strings?

    - by Chiraag E Sehar
    I want to find the longest possible sequence of words that match the following rules: Each word can be used at most once All words are Strings Two strings sa and sb can be concatenated if the LAST two characters of sa matches the first two characters of sb. In the case of concatenation, it is performed by overlapping those characters. For example: sa = "torino" sb = "novara" sa concat sb = "torinovara" For example, I have the following input file, "input.txt": novara torino vercelli ravenna napoli liverno messania noviligure roma And, the output of the above file according to the above rules should be: torino novara ravenna napoli livorno noviligure since the longest possible concatenation is: torinovaravennapolivornovilligure Can anyone please help me out with this? What would be the best data structure for this?

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  • passing array of structs from c# to regular dll

    - by buzz
    Hi there I have a regular dll with the followign fucntion exported. extern "C" __declspec(dllexport) int FindNearestStuff(double _latitude, double _longitude , LocationStruct * locations[]) LocationStruct is very simple struct LocationStruct { long positionIndex; long item; }; I'm tryign to call it from c# using [DllImport("myclever.dll", CharSet = CharSet.None)] private static extern int FindNearestStuff(double _latitude, double _longitude, ref LocationStruct [] locations); Its all cool and funky and i can step into the dll function from the debugger. Inside the dll the LocationStruct array is populated correctly and all is very good. the problem i have is when it returns back from the dll, the LocationStruct array is not coming back with the data - just empty values... what am i missing? cheers Buzz

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  • Why doesn't java.util.Set have get(int index)?

    - by Marty Pitt
    I'm sure there's a good reason, but could someone please explain why the java.util.Set interface lacks get(int Index), or any similar get() method? It seems that sets are great for putting things into, but I can't find an elegant way of retrieving a single item from it. If I know I want the first item, I can use set.iterator().next(), but otherwise it seems I have to cast to an Array to retrieve an item at a specific index? What are the appropriate ways of retrieving data from a set? (other than using an iterator) I'm sure the fact that it's excluded from the API means there's a good reason for not doing this -- could someone please enlighten me? EDIT: Some extremely great answers here, and a few saying "more context". The specific scneario was a dbUnit test, where I could reasonalby assert that the returned set from a query had only 1 item, and I was trying to access that item. However, the question is more valid without the scenario, as it remains more focussed : What's the difference between set & list. Thanks to all for the fantastic answers below.

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  • How to implement a simple queue properly?

    - by Stephen Hsu
    The current Go library doesn't provide the queue container. To implement a simple queue, I use circle array as the underlying data structure. It follows algorithms mentioned in TAOCP: Insert Y into queue X: X[R]<-Y; R<-(R+1)%M; if R=F then OVERFLOW. Delete Y from queue X: if F=R then UNDERFLOW; Y<-X[F]; F<-(F+1) % M. F: Front, R: Rear, M: Array length. Following is the code: package main import ( "fmt" ) type Queue struct { len int head, tail int q []int } func New(n int) *Queue { return &Queue{n, 0, 0, make([]int, n)} } func (p *Queue) Enqueue(x int) bool { p.q[p.tail] = x p.tail = (p.tail + 1) % p.len return p.head != p.tail } func (p *Queue) Dequeue() (int, bool) { if p.head == p.tail { return 0, false } x := p.q[p.head] p.head = (p.head + 1) % p.len return x, true } func main() { q := New(10) for i := 1; i < 13; i++ { fmt.Println(i, q.Enqueue(i)) } fmt.Println() for i := 1; i < 13; i++ { fmt.Println(q.Dequeue()) } } But the output is obviously wrong: 1 true 2 true 3 true 4 true 5 true 6 true 7 true 8 true 9 true 10 false 11 true 12 true 11 true 12 true 0 false 0 false 0 false 0 false 0 false 0 false 0 false 0 false 0 false 0 false I think I need one more field to make the code work properly. What do you suggest?

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  • How to find longest common substring using trees?

    - by user384706
    The longest common substring problem according to wiki can be solved using a suffix tree. From wiki: The longest common substrings of a set of strings can be found by building a generalised suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it I don't get this. Example: if I have: ABCDE and XABCZ then the suffix tree is (some branches from XABCZ omitted due to space): The longest common substring is ABC but it is not I can not see how the description of wiki helps here. ABC is not the deepest internal nodes with leaf nodes. Any help to understand how this works?

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  • Good data structure for efficient insert/querying on arbitrary properties

    - by Juliet
    I'm working on a project where Arrays are the default data structure for everything, and every query is a linear search in the form of: Need a customer with a particular name? customer.Find(x => x.Name == name) Need a customer with a particular unique id? customer.Find(x => x.Id == id) Need a customer of a particular type and age? customer.Find(x => x is PreferredCustomer && x.Age >= age) Need a customer of a particular name and age? customer.Find(x => x.Name == name && x.Age == age) In almost all instances, the criteria for lookups is well-defined. For example, we only search for customers by one or more of the properties Id, Type, Name, or Age. We rarely search by anything else. Is a good data structure to support arbitrary queries of these types with lookup better than O(n)? Any out-of-the-box implementations for .NET?

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  • Interview question: How do I detect a loop in this linked list?

    - by jjujuma
    Say you have a linked list structure in Java. It's made up of Nodes: class Node { Node next; // some user data } and each Node points to the next node, except for the last Node, which has null for next. Say there is a possibility that the list can contain a loop - i.e. the final Node, instead of having a null, has a reference to one of the nodes in the list which came before it. What's the best way of writing boolean hasLoop(Node first) which would return true if the given Node is the first of a list with a loop, and false otherwise? How could you write so that it takes a constant amount of space and a reasonable amount of time? Here's a picture of what a list with a loop looks like: Node->Node->Node->Node->Node->Node--\ \ | ----------------

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  • querying larg text file containing JSON objects.

    - by Maciek Sawicki
    Hi, I have few Gigabytes text file in format: {"user_ip":"x.x.x.x", "action_type":"xxx", "action_data":{"some_key":"some_value"...},...} each entry is one line. First I would like to easily find entries for given ip. This part is easy because I can use grep for example. However even for this I would like to find better solution because I would like to get response as fast as possible. Next part is more complicated because I would like to find entries from selected ip and of selected type and with particular value of some_key in action_data. Probably I would have to convert this file to SQL db (probably SQLite, because it will be desktop APP), but I would ask if there are exists better solutions?

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  • To join or not to join - database structure

    - by Industrial
    Hi! We're drawing up the database structure with the help of mySQL Workbench for a new app and the number of joins required to make a listing of the data is increasing drastically as the many-to-many relationships increases. The questions: Is it really that bad to merge tables where needed and thereby reducing joins? Is there a better way then pivot tables to take care of many-to-many relationships? We discussed about instead storing all data in serialized text columns and having the application make the sorting instead of the database, but this seems like a very bad idea, even though that the database will be heavily cached. What do you think? Thanks!

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  • advanced python autovivification

    - by Zhang18
    This question is about implementing the full PERL autovivification in python. I know similary questions were asked before and so far the best answre is http://stackoverflow.com/questions/635483/what-is-the-best-way-to-implement-nested-dictionaries-in-python/652284#652284. However, I'm looking to do this: a['x']['y'].append('z') without declaring a['x']['y'] = [] first, or rather, not declaring a['x'] = {} either. I know dict and list classes sorta don't mix so this is hard, but I'm interested in seeing if someone has an ingenius solution probably involving creating an inherited class from dict but defined a new append method on it? I also know this might throw off some python purists who will ask me to stick with Perl. But even just for a challenge, I'd like to see something. thx!

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  • Parsing Chunk of Data into Hash of Array With Perl

    - by neversaint
    I have data that looks like this: #info #info2 1:SRX004541 Submitter: UT-MGS, UT-MGS Study: Glossina morsitans transcript sequencing project(SRP000741) Sample: Glossina morsitans(SRS002835) Instrument: Illumina Genome Analyzer Total: 1 run, 8.3M spots, 299.9M bases Run #1: SRR016086, 8330172 spots, 299886192 bases 2:SRX004540 Submitter: UT-MGS Study: Anopheles stephensi transcript sequencing project(SRP000747) Sample: Anopheles stephensi(SRS002864) Instrument: Solexa 1G Genome Analyzer Total: 1 run, 8.4M spots, 401M bases Run #1: SRR017875, 8354743 spots, 401027664 bases 3:SRX002521 Submitter: UT-MGS Study: Massive transcriptional start site mapping of human cells under hypoxic conditions.(SRP000403) Sample: Human DLD-1 tissue culture cell line(SRS001843) Instrument: Solexa 1G Genome Analyzer Total: 6 runs, 27.1M spots, 977M bases Run #1: SRR013356, 4801519 spots, 172854684 bases Run #2: SRR013357, 3603355 spots, 129720780 bases Run #3: SRR013358, 3459692 spots, 124548912 bases Run #4: SRR013360, 5219342 spots, 187896312 bases Run #5: SRR013361, 5140152 spots, 185045472 bases Run #6: SRR013370, 4916054 spots, 176977944 bases What I want to do is to create a hash of array with first line of each chunk as keys and SR## part of lines with "^Run" as its array member: $VAR = { 'SRX004541' => ['SRR016086'], # etc } But why my construct doesn't work. And it must be a better way to do it. use Data::Dumper; my %bighash; my $head = ""; my @temp = (); while ( <> ) { chomp; next if (/^\#/); if ( /^\d{1,2}:(\w+)/ ) { print "$1\n"; $head = $1; } elsif (/^Run \#\d+: (\w+),.*/){ print "\t$1\n"; push @temp, $1; } elsif (/^$/) { push @{$bighash{$head}}, [@temp]; @temp =(); } } print Dumper \%bighash ;

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  • How to structure a database with questions and answers?

    - by Andreas Johannessen
    Hi I am going to make a simple application that uses a database. I could need some guidance on how to structure it. I shall make question program. What I have in mind is. One table with questions One table with the difficulity of the question One table with the category of the question However, what do I do with the answers? Have them as seperate columns in the question-table? It sounds like a bad practice.(Also, where do I have the correct answer) Each question will have 5 answers where only one of them is correct.

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  • Which data structure(s) to back a Final Fantasy ATB-style queue? (a delay queue)

    - by ZoFreX
    Situation: There are several entities in a simulated environment, which has an artificial notion of time called "ticks", which has no link to real time. Each entity takes it in turns to move, but some are faster than others. This is expressed by a delay, in ticks. So entity A might have a delay of 10, and B 25. In this case the turn order would go: A A B A A I'm wondering what data structure to use. At first I automatically thought "priority queue" but the delays are relative to "current time" which complicates matters. Also, there will be entities with larger delays and it's not unforseeable that the program will run through millions of ticks. It seems silly for an internal counter to be building higher and higher when the delays themselves stay relatively small and don't increase. So how would you solve this?

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  • Modifying C# dictionary value

    - by minjang
    I'm a C++ expert, but not at all for C#. I created a Dictionary<string, STATS>, where STATS is a simple struct. Once I built the dictionary with initial string and STATS pairs, I want to modify the dictionary's STATS value. In C++, it's very clear: Dictionary<string, STATS*> benchmarks; Initialize it... STATS* stats = benchmarks[item.Key]; // Touch stats directly However, I tried like this in C#: Dictionary<string, STATS> benchmarks = new Dictionary<string, STATS>(); // Initialize benchmarks with a bunch of STATS foreach (var item in _data) benchmarks.Add(item.app_name, item); foreach (KeyValuePair<string, STATS> item in benchmarks) { // I want to modify STATS value inside of benchmarks dictionary. STATS stat_item = benchmarks[item.Key]; ParseOutputFile("foo", ref stat_item); // But, not modified in benchmarks... stat_item is just a copy. } This is a really novice problem, but wasn't easy to find an answer. EDIT: I also tried like the following: STATS stat_item = benchmarks[item.Key]; ParseOutputFile(file_name, ref stat_item); benchmarks[item.Key] = stat_item; However, I got the exception since such action invalidates Dictionary: Unhandled Exception: System.InvalidOperationException: Collection was modified; enumeration operation may not execute. at System.ThrowHelper.ThrowInvalidOperationException(ExceptionResource resource) at System.Collections.Generic.Dictionary`2.Enumerator.MoveNext() at helper.Program.Main(String[] args) in D:\dev\\helper\Program.cs:line 75

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