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  • A python random function acts differently when assigned to a list or called directly...

    - by Dror Hilman
    I have a python function that randomize a dictionary representing a position specific scoring matrix. for example: mat = { 'A' : [ 0.53, 0.66, 0.67, 0.05, 0.01, 0.86, 0.03, 0.97, 0.33, 0.41, 0.26 ] 'C' : [ 0.14, 0.04, 0.13, 0.92, 0.99, 0.04, 0.94, 0.00, 0.07, 0.23, 0.35 ] 'T' : [ 0.25, 0.07, 0.01, 0.01, 0.00, 0.04, 0.00, 0.03, 0.06, 0.12, 0.14 ] 'G' : [ 0.08, 0.23, 0.20, 0.02, 0.00, 0.06, 0.04, 0.00, 0.54, 0.24, 0.25 ] } The scambling function: def scramble_matrix(matrix, iterations): mat_len = len(matrix["A"]) pos1 = pos2 = 0 for count in range(iterations): pos1,pos2 = random.sample(range(mat_len), 2) #suffle the matrix: for nuc in matrix.keys(): matrix[nuc][pos1],matrix[nuc][pos2] = matrix[nuc][pos2],matrix[nuc][pos1] return matrix def print_matrix(matrix): for nuc in matrix.keys(): print nuc+"[", for count in matrix[nuc]: print "%.2f"%count, print "]" now to the problem... When I try to scramble a matrix directly, It's works fine: print_matrix(mat) print "" print_matrix(scramble_matrix(mat,10)) gives: A[ 0.53 0.66 0.67 0.05 0.01 0.86 0.03 0.97 0.33 0.41 0.26 ] C[ 0.14 0.04 0.13 0.92 0.99 0.04 0.94 0.00 0.07 0.23 0.35 ] T[ 0.25 0.07 0.01 0.01 0.00 0.04 0.00 0.03 0.06 0.12 0.14 ] G[ 0.08 0.23 0.20 0.02 0.00 0.06 0.04 0.00 0.54 0.24 0.25 ] A[ 0.41 0.97 0.03 0.86 0.53 0.66 0.33.05 0.67 0.26 0.01 ] C[ 0.23 0.00 0.94 0.04 0.14 0.04 0.07 0.92 0.13 0.35 0.99 ] T[ 0.12 0.03 0.00 0.04 0.25 0.07 0.06 0.01 0.01 0.14 0.00 ] G[ 0.24 0.00 0.04 0.06 0.08 0.23 0.54 0.02 0.20 0.25 0.00 ] but when I try to assign this scrambling to a list , it does not work!!! ... print_matrix(mat) s=[] for x in range(3): s.append(scramble_matrix(mat,10)) for matrix in s: print "" print_matrix(matrix) result: A[ 0.53 0.66 0.67 0.05 0.01 0.86 0.03 0.97 0.33 0.41 0.26 ] C[ 0.14 0.04 0.13 0.92 0.99 0.04 0.94 0.00 0.07 0.23 0.35 ] T[ 0.25 0.07 0.01 0.01 0.00 0.04 0.00 0.03 0.06 0.12 0.14 ] G[ 0.08 0.23 0.20 0.02 0.00 0.06 0.04 0.00 0.54 0.24 0.25 ] A[ 0.01 0.66 0.97 0.67 0.03 0.05 0.33 0.53 0.26 0.41 0.86 ] C[ 0.99 0.04 0.00 0.13 0.94 0.92 0.07 0.14 0.35 0.23 0.04 ] T[ 0.00 0.07 0.03 0.01 0.00 0.01 0.06 0.25 0.14 0.12 0.04 ] G[ 0.00 0.23 0.00 0.20 0.04 0.02 0.54 0.08 0.25 0.24 0.06 ] A[ 0.01 0.66 0.97 0.67 0.03 0.05 0.33 0.53 0.26 0.41 0.86 ] C[ 0.99 0.04 0.00 0.13 0.94 0.92 0.07 0.14 0.35 0.23 0.04 ] T[ 0.00 0.07 0.03 0.01 0.00 0.01 0.06 0.25 0.14 0.12 0.04 ] G[ 0.00 0.23 0.00 0.20 0.04 0.02 0.54 0.08 0.25 0.24 0.06 ] A[ 0.01 0.66 0.97 0.67 0.03 0.05 0.33 0.53 0.26 0.41 0.86 ] C[ 0.99 0.04 0.00 0.13 0.94 0.92 0.07 0.14 0.35 0.23 0.04 ] T[ 0.00 0.07 0.03 0.01 0.00 0.01 0.06 0.25 0.14 0.12 0.04 ] G[ 0.00 0.23 0.00 0.20 0.04 0.02 0.54 0.08 0.25 0.24 0.06 ] What is the problem??? Why the scrambling do not work after the first time, and all the list filled with the same matrix?!

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  • PHP next MySQL row - how to move pointer until function checks true?

    - by ropbhardgood
    I have a PHP script which takes a value from a row in my MySQL database, runs it through a function, and if it determines it's true returns one value, and if it's false, it needs to go to the next value in the database and check that one until eventually one returns true. I think I need to use mysql_fetch_assoc, but I'm not really sure in what way to use it... I wish I could post my code to be more specific, but it's a lot of code and most of it has no bearing on this issue...

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  • How to define function in a string in Android?

    - by androidNoob
    I have an event handler that I want to be connected to a button through xml. Basically, I want to define it as a string in my xml file, then use the property inspector to select the name of the handler for my button (the "on Click" property). How do I define a call to the function in the string?

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  • How to return a single variable from a CUDA kernel function?

    - by Pooya
    I have a CUDA search function which calculate one single variable. How can I return it back. global void G_SearchByNameID(node* Node, long nodeCount, long start,char* dest, long answer){ answer = 2; } cudaMemcpy(h_answer, d_answer, sizeof(long), cudaMemcpyDeviceToHost); cudaFree(d_answer); for both of these lines I get this error: error: argument of type "long" is incompatible with parameter of type "const void *"

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  • How to build a function on the fly in java?

    - by stereos
    I'm parsing a text file that is being mapped to some java code like such: public void eval(Node arg) { if(arg.data.equals("rand")) { moveRandomly(); } else if(arg.data.equals("home")) { goHome(); }//snip.. This is going to need to be re-evaluated about a thousand times and I'd rather not have to traverse the whole thing every time. Is there any way to make this traversal once and then have it be a function that is called every other time?

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  • Why .data() function of jQuery is better to prevent memory leaks?

    - by burak ozdogan
    Hi, Regarding to jQuery utility function jQuery.data() the online documentation says: "The jQuery.data() method allows us to attach data of any type to DOM elements in a way that is safe from circular references and therefore from memory leaks. " Why to use: document.body.foo = 52; can result a memory leak -or in what conditions- so that I should use jQuery.data(document.body, 'foo', 52); Should I ALWAYS prefer .data() instead of using expandos in any case? (I would appreciate if you can provide an example to compare the differences) Thanks, burak ozdogan

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  • Can a database function be called in the predicate of a llblgen query?

    - by Dan Appleyard
    I want to use a table-valued database function in the where clause of a query I am building using LLBLGen Pro 2.6 (self-servicing). SELECT * FROM [dbo].[Users] WHERE [dbo].[Users].[UserID] IN ( SELECT UserID FROM [dbo].[GetScopedUsers] (@ScopedUserID) ) I am looking into the FieldCompareSetPredicate class, but can't for the life of me figure out what the exact signature would be. Any help would be greatly appreciated.

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  • What's the best way to return stuff from a PHP function, and simultaneously trigger a jQuery action?

    - by Jack Webb-Heller
    So the title is a tad ambiguous, but I'll try and give an example. Basically, I have an 'awards' system (similar to that of StackOverflow's badges) in my PHP/CodeIgniter site, and I want, as soon as an award is earned, a notification to appear to the user. Now I'm happy to have this appear on the next page load, but, ideally I'd like it to appear as soon as the award is transactioned since my site is mostly Ajax-powered and there may not be page reloads very often. The way the system works currently, is: 1) If the user does something to trigger the earning of an award, CodeIgniter does this: $params['user_id'] = $this->tank_auth->get_user_id(); $params['award_id'] = 1; // (I have a database table with different awards in) $this->awards->award($params); 2) My custom library, $this->awards, runs the award function: function award($params) { $sql = $this->ci->db->query("INSERT INTO users_awards (user_id, award_id) VALUES ('".$params['user_id']."','".$params['award_id']."') ON DUPLICATE KEY UPDATE duplicate=duplicate+1"); $awardinfo = $this->ci->db->query("SELECT * FROM awards WHERE id = ".$params['award_id']); // If it's the 'first time' the user has gotten the award (e.g. they've earnt it) if ($awardinfo->row('duplicate') == 0) { $params['title'] = $awardinfo->row('title'); $params['description'] = $awardinfo->row('description'); $params['iconpath'] = $awardinfo->row('iconpath'); $params['percentage'] = $awardinfo->row('percentage'); return $params; } } So, it awards the user (and if they've earnt it twice, updates a useless duplicate field by one), then checks if it's the first time they've earnt it (so it can alert them of the award). If so, it gets the variables (title of the award, the award description, the path to an icon to display for the award, and finally the percentage of users who have also got this award) and returns them as an array. So... that's that. Now I'd like to know, what's the best way to do this? Currently my Award-giving bit is called from a controller, but I guess if I want this to trigger via Ajax, then the code should be placed in a View file...? To sum it up: I need the returned award data to appear without a page refresh. What's the best way of doing this? (I'm already using jQuery on my page). Thanks very much everybody! Jack

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  • Back-to-back ajax long poll without a recursive callback function.

    - by Teddy
    I'm trying to make long poll ajax calls, back to back. The problem with the current way I'm doing it is that I make each successive call from the callback function of the previous call. Is this a problem? Firebug doesn't show any of my ajax calls as completed, even thought the data is returned and the callback is executed. The recursive structure seems inefficient. Any ideas?

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  • Resize image with blue dots like in copy/Paste Function?

    - by Dominik
    Hello, I want to add a resize function to my app which works like the integrated copy feature on the iPhone. When the user opens the view he should see the image with the four blue dots which enable him to resize it. Is there an available example for this? Or has anyone the keywords for this functionality, which i can use for my further Search? Thanks for all tips and hints

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  • Sequential numbering from recursive function? e.g. 2, 2.1, 2.1.1, 2.2, 2.2.1

    - by Pete
    I have a recursive function reading a "table of contents" of documents from a database. I would like to print numbering with the document that reflects where the item is in the tree, e.g. First item, 1.1 Child of first item, 1.1.1 Child of child of first item, 1.2 Child of first item, Second item, 2.1 Child of second item, etc. Rather stumped about this at the moment - help please?

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