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• script unable to find directories/files when running from qsub cluster script

  - by user248237

  I'm calling several unix commands and python on a python script from a qsub shell script, meant to run on a cluster. The trouble is that when the script executes, something seems to go awry in the shell, so that directories and files that exist are not found. For example, in the .out output files of qsub I see the following errors: cd: /valid/dir/name: No such file or directory python valid/script/name.py python: can't open file 'valid/script/name.py': [Errno 2] No such file or directory so the script cannot cd into a dir that definitely exist. Similarly, calling python on a python script that definitely exists yields an error. any idea what might be going wrong here, or how I could try to debug this? thanks very much.

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• how to `tail` the latest file in a directory

  - by Itay Moav

  In shell, how can I tail the latest file created in a directory?

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• Accessing variable from ARGV

  - by snaken

  I'm writing a cPanel postwwwact script, if you're not familiar with the script its run after a new account is created. it relies on the user account variable being passed to the script which i then use for various things (creating databases etc). However, I can't seem to find the right way to access the variable i want. I'm not that good with shell scripts so i'd appreciate some advice. I had read somewhere that the value i wanted would be included in $ARGV{'user'} but this simply gives "root" as opposed to the value i need. I've tried looping through all the arguments (list of arguments here) like this: #!/bin/sh for var do touch /root/testvars/$var done and the value i want is in there, i'm just not sure how to accurately target it. There's info here on doing this with PHP or Perl but i have to do this as a shell script. EDIT Ideally i would like to be able to call the variable by something other than $1 or $2 etc as this would create issues if an argument is added or removed Any ideas?

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• GET command is giving two kinds of ouput,why???

  - by developer

  iam using GET command to get the content of a page.When i write the same command on shell prompt it gives correct result but when i use that in PHP file then sometimes its giving correct result but sometimes it gives only half of the content i.e. end-half portion only. Iam using following command in shell script :- GET http://www.abc.com/ -H "Referer:http://www.abcd.com/" and following in PHP file :- $data=exec('GET http://www.abc.com/ -H "Referer:http://www.abcd.com/"'); echo $data; Now please tell why this command is not giving full content of the page when im using it in php file.

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• PHP system() help

  - by sea_1987

  Hello, I have this shell script #!/bin/sh ############################################################# # Example startup script for the SecureTrading Xpay4 client # # Install Xpay4 into /usr/local/xpay4 # # To run this script automatically at startup, place the # # following line at the end of the bootup script. # # eg. for RedHat linux: /etc/rc.d/rc.local # # # # /usr/local/xpay4/xpay4.sh # ############################################################# # Configuration options # Path to java executable JAVAPATH=/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home ########## Do not alter anything below this line ########## echo "Starting Xpay4. Please ensure the Xpay4 client is not already running" $JAVAPATH/java -jar /usr/local/xpay4/Xpay4.jar /usr/local/xpay4/xpay4.ini & And I am trying to run it using, system("/x/sh/shell.sh"); I am doing this when a user navigates to a certain page on my site, however I am getting just a white blank screen is there a way to error check with system(), I am currently using error_reporting(E_ALL | E_STRCIT) and that is applied site wide

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• typeset: not found error when executing shell script. Am I missing a package or something?

  - by user11045

  Hi, below is the error and corresponding script lines: spec@Lucifer:~/Documents/seagull.svn.LINUX$ ./build.ksh ./build.ksh: 36: typeset: not found ./build.ksh: 39: typeset: not found ./build.ksh: 44: function: not found Command line syntax of - options -exec : mode used for compilation (default RELEASE) -target : target used for compilation (default all) -help : display the command line syntax ./build.ksh: 52: function: not found ERROR: spec@Lucifer:~/Documents/seagull.svn.LINUX$ Script Init of variables BUILD_TARGET=${BUILD_DEFAULT_TARGET} BUILD_EXEC=${BUILD_DEFAULT_EXEC} typeset -u BUILD_OS=uname -s | tr '-' '_' | tr '.' '_' | tr '/' '_' BUILD_CODE_DIRECTORY=code BUILD_DIRECTORY=pwd typeset -u BUILD_ARCH=uname -m | tr '-' '_' | tr '.' '_' | tr '/' '_' BUILD_VERSION_FILE=build.conf BUILD_DIST_MODE=0 BUILD_FORCE_MODE=0

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• Enabling a multi display desktop completely broke Gnome Shell. Help?

  - by Chintan Parikh

  I've been trying to get my dual desktops working on Ubuntu for a while. I previously had them as one large desktop, but that was incredibly slow for some reason. I tried to switch them to multi display desktop on the AMD Catalyst Control Center. Here's what I get after restarting and logging in: http://i.imgur.com/SEjgU.png I'm running an AMD Quad Core A6, AMD Radeon 6540G2 GPU, 16GB Ram. Ubuntu 12.04 Any ideas?

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• What does /dev/null mean in a shell script?

  - by rishiag

  I've started learning bash scripting by using this guide: http://www.tldp.org/LDP/abs/abs-guide.pdf However I got stuck at the first script: cd /var/log cat /dev/null > messages cat /dev/null > wtmp echo "Log files cleaned up." What do lines 2 and 3 do in Ubuntu (I understand cat)? Is it only for other Linux distributions? After running this script as root, the output I get is Log files cleaned up. But /var/log still contains all the files.

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• How to resolve symbolic links in a shell script

  - by Greg Hewgill

  Given an absolute or relative path (in a Unix-like system), I would like to determine the full path of the target after resolving any intermediate symlinks. Bonus points for also resolving ~username notation at the same time. If the target is a directory, it might be possible to chdir() into the directory and then call getcwd(), but I really want to do this from a shell script rather than writing a C helper. Unfortunately, shells have a tendency to try to hide the existence of symlinks from the user (this is bash on OS X): $ ls -ld foo bar drwxr-xr-x 2 greg greg 68 Aug 11 22:36 bar lrwxr-xr-x 1 greg greg 3 Aug 11 22:36 foo -> bar $ cd foo $ pwd /Users/greg/tmp/foo $ What I want is a function resolve() such that when executed from the tmp directory in the above example, resolve("foo") == "/Users/greg/tmp/bar".

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• flush output in Bourne Shell

  - by n-alexander

  I use echo in Upstart scripts to log things: script echo "main: some data" >> log end script post-start script echo "post-start: another data" >> log end script Now these two run in parallel, so in the logs I often see: main: post-start: some data another data This is not critical, so I won't employ proper synching, but thought I'd turn auto flush ON to at least reduce this effect. Is there an easy way to do that? Update: yes, flushing will not properly fix it, but I've seen it help such situations to some degree, and this is all I need in this case. It's just that I don't know how to do it in Shell

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• Shell access to files created by Apache user in PHP

  - by Alexandru Trandafir Catalin

  My website creates files with owner apache:apache when uploading a file, like this: drwxr-xr-x 2 apache apache 4096 Aug 28 14:07 . drwxr-xr-x 9118 apache apache 233472 Aug 28 14:07 .. -rw-r--r-- 1 apache apache 41550 Aug 28 14:07 468075_large.jpg -rw-r--r-- 1 apache apache 26532 Aug 28 14:07 468075_medium.jpg -rw-r--r-- 1 apache apache 50881 Aug 28 14:07 468075_original.jpg -rw-r--r-- 1 apache apache 4316 Aug 28 14:07 468075_small.jpg Now I am trying to create a file inside the same folder with the user that owns that domain in Plesk and I get permission denied. How can I have both apache and shell user with permissions over that files? Thanks.

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• android : how to run a shell command from within code

  - by ee3509

  I am trying to execute a command from within my code, the command is "echo 125 /sys/devices/platform/flashlight.0/leds/flashlight/brightness" and I can run it without problems from adb shell I am using Runtime class to execute it : Runtime.getRuntime().exec("echo 125 > /sys/devices/platform/flashlight.0/leds/flashlight/brightness"); However I get a permissions error since I am not supposed to access the sys directory. I have also tried to place the command in a String[] just in case spaces caused a problem but it didn't make much differense. Does anyone know any workaround for this ?

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• Cheat sheet exhibiting bash shell stdout/stderr redirection behavior

  - by SetJmp

  Is there a good cheat sheet demonstrating the many uses of BASH shell redirection? I would love to give such a thing to my students. Some examples I'd like to see covered: cmd > output_file.txt #redirect stdout to output_file.txt cmd 2> output_file.txt #redirect stderr to output_file.txt cmd >& outpout_file.txt #redirect both stderr and stdout to output_file.txt cmd1 | cmd2 #pipe cmd1 stdout to cmd2's stdin cmd1 2>&1 | cmd2 #pipe cmd1 stdout and stderr to cmd2's stdin cmd1 | tee result.txt #print cmd1's stdout to screen and also write to result.txt cmd1 2>&1 | tee result.txt #print stdout,stderr to screen while writing to result.txt (or we could just make this a community wiki and enumerate such things here) Thanks! SetJmp

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• How to stop java application using a shell script

  - by Fernando Moyano

  I have a shell script, which is run under a opensuse linux, that starts a java application (under a jar), the script is: #!/bin/sh #export JAVA_HOME=/usr/local/java #PATH=/usr/local/java/bin:${PATH} #---------------------------------# # dynamically build the classpath # #---------------------------------# THE_CLASSPATH= for i in `ls ./lib/*.jar` do THE_CLASSPATH=${THE_CLASSPATH}:${i} done #---------------------------# # run the application # #---------------------------# java -server -Xms512M -Xmx1G -cp ".:${THE_CLASSPATH}" com.package.MyApp > myApp.out 2>&0 & This script is working fine. Now, what I want, is to write a script to kill gracefully this app, something that allows me to kill it with the -15 argument from Linux kill command. The problem, is that there will be many java applications running on this server, so I need to specifically kill this one. Any help? Thanks in advance, Fernando

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• get a list of function names in a shell script

  - by n-alexander

  I have a Bourne Shell script that has several functions in it, and allows to be called in the following way: my.sh <func_name> <param1> <param2> Inside func_name() will be called with param1 and param2. I want to create a "help" function that would just list all available functions, even without parameters. The question: how do I get a list of all function names in a script from inside the script? I'd like to avoid having to parse it and look for function patterns. Too easy to get wrong. Thanks, Alex

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• Optimize grep, awk and sed shell stuff

  - by kockiren

  I try to sum the traffic of diffrent ports in the logfiles from "IPCop" so i write and command for my shell, but i think its possible to optimize the command. First a Line from my Logfile: 01/00:03:16 kernel INPUT IN=eth1 OUT= MAC=xxx SRC=xxx DST=xxx LEN=40 TOS=0x00 PREC=0x00 TTL=98 ID=256 PROTO=TCP SPT=47438 DPT=1433 WINDOW=16384 RES=0x00 SYN URGP=0 Now i grep with following Command the sum of all lengths who contains port 1433 grep 1433 log.dat|awk '{for(i=1;i<=10;i++)if($i ~ /LEN/)print $i};'|sed 's/LEN=//g;'|awk '{sum+=$1}END{print sum}' The for loop i need because the LEN-col is not on same position at all time. Any suggestion for optimizing this command? Regards Rene

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• Recursive FTP directory listing in shell/bash with a single session (using cURL or ftp)

  - by Timo

  I am writing a little shellscript that needs to go through all folders and files on an ftp server (recursively). So far everything works fine using cURL - but it's pretty slow, becuase cURL starts a new session for every command. So for 500 directories, cURL preforms 500 logins. Does anybody know, whether I can stay logged in using cURL (this would be my favourite solution) or how I can use ftp with only one session in a shell script? I know how to execute a set of ftp commands and retrieve the response, but for the recursive listing, it has to be a little more dynamic... Thanks for your help!

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• Executing shell commands from Java

  - by Lauren?iu Dascalu

  Hello, I'm trying to execute a shell command from a java application, on the GNU/Linux platform. The problem is that the script, that calls another java application, never ends, although it runs successfully from bash. I tried to debug it: (gdb) bt #0 0xb773d422 in __kernel_vsyscall () #1 0xb7709b5d in pthread_join (threadid=3063909232, thread_return=0xbf9cb678) at pthread_join.c:89 #2 0x0804dd78 in ContinueInNewThread () #3 0x080497f6 in main () I tried with: ProcessBuilder(); and Runtime.getRuntime().exec(cmd); Looks like it waits for something to finish. Any ideas? Thanks, Lauren?iu

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• Show last command with up arrow on a linux c shell

  - by nunos

  I have implemented a simple linux shell in c. Now, I am adding some features and one I immediately thought about was to be able to show the last commands with the up arrow. Question 1: However, I have no idea how to accomplish this. Do you? Question 2: Any comment on how to store the "history" commands are also appreciated. I suppose something like a queue which allows access to all elements would be a good idea. Am I wrong? Do I have to implement it or is there already some good implementation out there I should know about? Thanks.

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• Shell script to process files

  - by Harish

  I need to write a Shell Script to process a huge folder of nearly 20 levels.I have to process each and every file and check which files contain lines like select insert update When I mean line it should take the line till I find a semicolon in that file. I should get a result like this C:/test.java select * from dual C:/test.java select * from test C:/test1.java select * from tester C:/test1.java select * from dual and so on.Right now I have a script to read all the files #!bin/ksh FILE=<FILEPATH to be traversed> TEMPFILE=<Location of Temp file> cd $FILE for f in `find . ! -type d`; do cat $FILE/addedText.txt>>$TEMPFILE/newFile.txt cat $f>>$TEMPFILE/newFile.txt rm $f cat $TEMPFILE/newFile.txt>>$f rm $TEMPFILE/newFile.txt done I have very little knowledge of awk and sed to proceed further in reading each file and achieve what I want to.Can anyone help me in this

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• Setting variables in shell script by running commands

  - by rajya vardhan

  >cat /tmp/list1 john jack >cat /tmp/list2 smith taylor It is guaranteed that list1 and list2 will have equal number of lines. f(){ i=1 while read line do var1 = `sed -n '$ip' /tmp/list1` var2 = `sed -n '$ip' /tmp/list2` echo $i,$var1,$var2 i=`expr $i+1` echo $i,$var1,$var2 done < $INFILE } So output of f() should be: 1,john,smith 2,jack,taylor But getting 1,p,p 1+1,p,p If i replace following: var1 = `sed -n '$ip' /tmp/list1` var2 = `sed -n '$ip' /tmp/list2` with this: var1=`head -$i /tmp/vip_list|tail -1` var2=`head -$i /tmp/lb_list|tail -1` Then output: 1,john,smith 1,john,smith Not an expert of shell, so please excuse if sounds childish :)

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• Best way to choose a random file from a directory in a shell script

  - by jhs

  What is the best way to choose a random file from a directory in a shell script? Here is my solution in Bash but I would be very interested for a more portable (non-GNU) version for use on Unix proper. dir='some/directory' file=`/bin/ls -1 "$dir" | sort --random-sort | head -1` path=`readlink --canonicalize "$dir/$file"` # Converts to full path echo "The randomly-selected file is: $path" Anybody have any other ideas? Edit: lhunath makes a good point about parsing ls. I guess it comes down to whether you want to be portable or not. If you have the GNU findutils and coreutils then you can do: find "$dir" -maxdepth 1 -mindepth 1 -type f -print0 \ | sort --zero-terminated --random-sort \ | sed 's/\d000.*//g/' Whew, that was fun! Also it matches my question better since I said "random file". Honsetly though, these days it's hard to imagine a Unix system deployed out there having GNU installed but not Perl 5.

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• Shell script not picking up password file...

  - by BigDogsBarking

  Running the below shell script seems to ignore the password file I'm feeding it. I'm continually prompted for it. If I enter it, the rest of the script goes without a hitch, but as I'm running it via cron, I really need to get it to read from the file... Any suggestions? #!/bin/sh p=$(<password.txt) set -- $p pass_phrase=$1 destination="/var/www/d" cd /var/sl/ for FILE in *.pgp; do FILENAME=${FILE%.pgp} gpg --passphrase "$pass_phrase" --output "$destination/$FILENAME" --decrypt "$FILE" rm -f $FILE done

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• shell script problem: does not work on the terminal, but works in a script

  - by jrharshath

  Hi, I was playing with shell scripting, when a strange thing happened. I need someone to explain it. I have a file 'infile', contents: line one line2 third line last a test script test.sh, contents: read var1 echo $var1 i executed: cat infile | ./test.sh output was line one Then I did: cat infile | read var1 echo $var1 Result: a blank line. I even tried cat infile | read var1; echo $var1; same result. why does this happen?

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• Shell Script - comparing lines of text, deleting matches

  - by SirRatty

  Hi all, I've done some searching for this but cannot find what I'm after, specifically. I have two files: "a.txt", "b.txt". Each contains a list of email addresses, separated by newlines. For all lines in "a.txt", I need to check for a match anywhere in "b.txt". If so, the email address in "a.txt" needs to be removed. (Alternatively, a new file "c.txt" could be created with the output if that is easier.) I'm using Mac OS X, so am looking for a shell script that could help, or pointers to how I'd go about constructing the script. Thanks for any help.

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