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  • Is there a way to rollback and exit a psql script on error?

    - by metanaito
    I have a psql script that looks like this: -- first set of statements begin sql statement; sql statement; sql statement; exception when others then rollback write some output (here I want to exit the entire script and not continue on to the next set of statements) end / -- another set of statements begin sql statement; sql statement; sql statement; exception when others then rollback write some output (here I want to exit the entire script and not continue) end / ... and so on Is it possible to exit the script and stop processing the rest of the script?

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  • 50 sequences in one line

    - by user343934
    I have Muttiple sequence alignment (clustal) file and i want to read this file and arrange sequences in a such a way that in looks more clear and precise in order. I am doing this from biopython using AlignIO object. My codes like this alignment = AlignIO.read("opuntia.aln", "clustal") print "Number of rows: %i" % len(align) for record in alignment: print "%s - %s" % (record.id, record.seq) My Output-- http://i48.tinypic.com/ae48ew.jpg , it looks messy and long scrolling. What i want to do is print only 50 sequences in each line and continue till the end of alignment file. I wish to have output like this---http://i45.tinypic.com/4vh5rc.jpg from --http://www.ebi.ac.uk/Tools/clustalw2/, sorry two links are just a text due to my reputation. Any suggestions, algorithm and sample code is appreciated Thanks in advance Br,

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  • Pattern Matching in Columns

    - by Chronicles
    File 1 A11;F1;BMW A23;F2;BMW B12;F3;BMW H11;F4;JBW File 2 P01;A1;0;0--00 ;123;456;150 P01;A11;0;0--00 ;123;444;208 P01;B12;0;0--00 ;123;111;36 P01;V11;0;0--00 ;123;787;33.9 Output -;-;-;P01;A1;0;0--00 ;123;456;150 A11;F1;BMW;P01;A11;0;0--00 ;123;444;208 B12;F3;BMW;P01;B12;0;0--00 ;123;111;36 -;-;-;P01;V11;0;0--00 ;123;787;33.9 I TRIED awk 'FNR==NR {a[$2] = $0; next }{ if($1 in a) {p=$1;$1="";print a[p],$0}}' File1 File2 But didnt work. Basically I want to get the details from FILE 1 and compare with FILE2 (master list) . Example : A1 in FILE2 was not available in FILE1 , so in output file we have “-“ for 1st three fields and rest from FILE2 . Now, we have A11 and we got the detail in FILE1. So we write details of A11 from both File 1 & 2

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  • Better way to make a bash script self-tracing?

    - by Kevin Little
    I have certain critical bash scripts that are invoked by code I don't control, and where I can't see their console output. I want a complete trace of what these scripts did for later analysis. To do this I want to make each script self-tracing. Here is what I am currently doing: #!/bin/bash # if last arg is not '_worker_', relaunch with stdout and stderr # redirected to my log file... if [[ "$BASH_ARGV" != "_worker_" ]]; then $0 "$@" _worker_ >>/some_log_file 2>&1 # add tee if console output wanted exit $? fi # rest of script follows... Is there a better, cleaner way to do this?

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  • Using fft2 with reshaping for an RGB filter

    - by Mahmoud Aladdin
    I want to apply a filter on an image, for example, blurring filter [[1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0]]. Also, I'd like to use the approach that convolution in Spatial domain is equivalent to multiplication in Frequency domain. So, my algorithm will be like. Load Image. Create Filter. convert both Filter & Image to Frequency domains. multiply both. reconvert the output to Spatial Domain and that should be the required output. The following is the basic code I use, the image is loaded and displayed as cv.cvmat object. Image is a class of my creation, it has a member image which is an object of scipy.matrix and toFrequencyDomain(size = None) uses spf.fftshift(spf.fft2(self.image, size)) where spf is scipy.fftpack and dotMultiply(img) uses scipy.multiply(self.image, image) f = Image.fromMatrix([[1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0]]) lena = Image.fromFile("Test/images/lena.jpg") print lena.image.shape lenaf = lena.toFrequencyDomain(lena.image.shape) ff = f.toFrequencyDomain(lena.image.shape) lenafm = lenaf.dotMultiplyImage(ff) lenaff = lenafm.toTimeDomain() lena.display() lenaff.display() So, the previous code works pretty well, if I told OpenCV to load the image via GRAY_SCALE. However, if I let the image to be loaded in color ... lena.image.shape will be (512, 512, 3) .. so, it gives me an error when using scipy.fttpack.ftt2 saying "When given, Shape and Axes should be of same length". What I tried next was converted my filter to 3-D .. as [[[1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0]], [[1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0]], [[1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0], [1/9.0, 1/9.0, 1/9.0]]] And, not knowing what the axes argument do, I added it with random numbers as (-2, -1, -1), (-1, -1, -2), .. etc. until it gave me the correct filter output shape for the dotMultiply to work. But, of course it wasn't the correct value. Things were totally worse. My final trial, was using fft2 function on each of the components 2-D matrices, and then re-making the 3-D one, using the following code. # Spiltting the 3-D matrix to three 2-D matrices. for i, row in enumerate(self.image): r.append(list()) g.append(list()) b.append(list()) for pixel in row: r[i].append(pixel[0]) g[i].append(pixel[1]) b[i].append(pixel[2]) rfft = spf.fftshift(spf.fft2(r, size)) gfft = spf.fftshift(spf.fft2(g, size)) bfft = spf.fftshift(spf.fft2(b, size)) newImage.image = sp.asarray([[[rfft[i][j], gfft[i][j], bfft[i][j]] for j in xrange(len(rfft[i]))] for i in xrange(len(rfft))] ) return newImage Any help on what I made wrong, or how can I achieve that for both GreyScale and Coloured pictures.

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  • HttpWebResponse get mixed up when used inside multiple threads

    - by Holli
    In my Application I have a few threads who will get data from a web service. Basically I just open an URL and get an XML output. I have a few threads who do this continuously but with different URLs. Sometimes the results are mixed up. The XML output doesn't belong to the URL of a thread but to the URL of another thread. In each thread I create an instance of the class GetWebPage and call the method Get from this instance. The method is very simple and based mostly on code from the MSDN documentation. (See below. I removed my error handling here!) public string Get(string userAgent, string url, string user, string pass, int timeout, int readwriteTimeout, WebHeaderCollection whc) { string buffer = string.Empty; HttpWebRequest myWebRequest = (HttpWebRequest)WebRequest.Create(url); if (!string.IsNullOrEmpty(userAgent)) myWebRequest.UserAgent = userAgent; myWebRequest.Timeout = timeout; myWebRequest.ReadWriteTimeout = readwriteTimeout; myWebRequest.Credentials = new NetworkCredential(user, pass); string[] headers = whc.AllKeys; foreach (string s in headers) { myWebRequest.Headers.Add(s, whc.Get(s)); } using (HttpWebResponse myWebResponse = (HttpWebResponse)myWebRequest.GetResponse()) { using (Stream ReceiveStream = myWebResponse.GetResponseStream()) { Encoding encode = Encoding.GetEncoding("utf-8"); StreamReader readStream = new StreamReader(ReceiveStream, encode); // Read 1024 characters at a time. Char[] read = new Char[1024]; int count = readStream.Read(read, 0, 1024); int break_counter = 0; while (count > 0 && break_counter < 10000) { String str = new String(read, 0, count); buffer += str; count = readStream.Read(read, 0, 1024); break_counter++; } } } return buffer; As you can see I have no public properties or any other shared resources. At least I don't see any. The url is the service I call in the internet and buffer is the XML Output from the server. Like I said I have multiple instances of this class/method in a few threads (10 to 12) and sometimes buffer does not belong the the url of the same thread but another thread.

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  • Java string too long?

    - by wrongusername
    I have the following code in Java (which worked just fine in C++ for some reason) which produces an error: int a; System.out.println("String length: " + input.length()); for(a = 0; ((a + 1) * 97) < input.length(); a++) { System.out.print("Substring at " + a + ": "); System.out.println(input.substring(a * 97, 97)); //other code here... } Output: String length: 340 Substring at 0: HelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHe Substring at 1: Exception in thread "AWT-EventQueue-0" java.lang.StringIndexOutOfBoundsException: String index out of range: -97 //long list of "at ..." stuff Substring at 2: Using a string of length 200, however, the following output is produced: String length: 200 Substring at 0: HelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHelloHe Substring at 1: That is it; no exceptions raised, just... nothing. What is happening here?

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  • Cross browser (chrome/firefox) trying to get top-pos defined in percentage as pixels

    - by Cinaird
    I have a problem whit cross browser output, I'm trying to get the top and left css attribute of a div, but firefox gives me the exact pixel position and Chrome give me the percentage. Example: http://web.cinaird.se/pdf/test.htm CSS #mix{ position:absolute; top: 10px; left: 45%; background-color:#f0f; } jQuery css top: " + $("#mix").css("top") + " <br/>css left: " + $("#mix").css("left") Output Firefox (and IE8): css top: 10px css left: 267.3px Chrome: css top: 10px css left: 45% is there any way to get the same result for both (all) browsers? I would prefer to get a pixel value without any major calculation

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  • How to sort a key of a map

    - by Tsuna Sawada
    How to sort (any kind of sorting) a key of a map(treemap or hashmap) i have a problem and it goes like this. i have a map that has a key of 27527-683, 27525-1179, 27525-1571, 27525-1813, 27525-4911, 27526-1303, 27526-3641, 27525-3989, 27525-4083, 27525-4670, 27526-4102, 27526-558, 27527-2411, 27527-4342 this is the list of keys and the value for each of the key is a list. now, how can i sort this key in ascending order by number. ex. if i want to sort : 1,2,11,20,31,3,10 i want to have as output is : 1,2,3,10,11,20,31 but when i use the autosort of treemap the output goes : 1,10,11,2,20,3,31 how can i sort it in ascending order by numeric? please help me. i can't think of anymore ways because this is my first time handling map and list

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  • Entity Aspect (in Spring)

    - by niklassaers
    Hi guys, I'm having a bit of a problem defining my aspects. I've got a bunch of entities that I'd like to profile the get-methods in, so I've written the following pointcut and method @Pointcut("execution(* tld.myproject.data.entities.*.get*()") public void getEntityProperty() {} @Around("getEntityProperty()") public Object profileGetEntityProperty(ProceedingJoinPoint pjp) throws Throwable { long start = System.currentTimeMillis(); String name = pjp.getSignature().getName(); Object output = pjp.proceed(); long elapsedTime = System.currentTimeMillis() - start; if(elapsedTime > 100) System.err.println("profileGetEntityProperty: Entity method " + name + " execution time: " + elapsedTime + " ms."); return output; } I've got weaving turned on in my configuration, and aspects weaving into the business layer work just fine. Is my pointcut correctly written? Or is there something about entities that make them non-weavable? (my entity is prefixed with @Entity before the class definition) Cheers Nik

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  • Prolog - Finding the current directory, relative directory for 'tell' predicate

    - by Bharat
    I'm having trouble trying to figure out how to get prolog to spit out a text file where I want it to. I'm currently doing a bunch of operations and then using tell('output.txt') to record the output. Now the problem is that when I do this, it creates this file in the SWI \bin\ folder. I was wondering if there's a way to make it create this file in the directory containing the actual .pl file. So even if the file was moved (and it will be), the text file gets created right where the source file is. Long story short, is there a way to get the location of the source file once the source file has been consulted? Many Thanks!

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  • How do you Remove an Invalid Remote Branch Reference from Git?

    - by Casey
    In my current repo I have the following output: $ git branch -a * master remotes/origin/master remotes/public/master I want to delete 'remotes/public/master' from the branch list: $ git branch -d remotes/public/master error: branch 'remotes/public/master' not found. Also, the output of 'git remote' is strange, since it does not list 'public': $ git remote show origin How can I delete 'remotes/public/master' from the branch list? Update, tried the 'git push' command: $ git push public :master fatal: 'public' does not appear to be a git repository fatal: The remote end hung up unexpectedly Solution: The accepted answer had the solution at the bottom! git gc --prune=now

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  • "Anagram solver" based on statistics rather than a dictionary/table?

    - by James M.
    My problem is conceptually similar to solving anagrams, except I can't just use a dictionary lookup. I am trying to find plausible words rather than real words. I have created an N-gram model (for now, N=2) based on the letters in a bunch of text. Now, given a random sequence of letters, I would like to permute them into the most likely sequence according to the transition probabilities. I thought I would need the Viterbi algorithm when I started this, but as I look deeper, the Viterbi algorithm optimizes a sequence of hidden random variables based on the observed output. I am trying to optimize the output sequence. Is there a well-known algorithm for this that I can read about? Or am I on the right track with Viterbi and I'm just not seeing how to apply it?

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  • How to use > in an xargs command?

    - by jesse
    I want to find a bash command that will let me grep every file in a directory and write the output of that grep to a separate file. My guess would have been to do something like this ls -1 | xargs -I{} "grep ABC '{}' > '{}'.out" but, as far as I know, xargs doesn't like the double-quotes. If I remove the double-quotes, however, then the command redirects the output of the entire command to a single file called '{}'.out instead of to a series of individual files. Does anyone know of a way to do this using xargs? I just used this grep scenario as an example to illustrate my problem with xargs so any solutions that don't use xargs aren't as applicable for me.

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  • Reading an embedded file from an ASP.NET Custom Server Control an rendering it

    - by Andreas Grech
    I currently have a file "abc.htm" in my Custom Server Control Project and it's Build Action is set to Embedded Resource. Now in the RenderContents(HtmlTextWriter output) method, I need to read that file and render it on the website. I am trying the following but it's to no avail: protected override void RenderContents(HtmlTextWriter output) { var providersURL = Page.ClientScript.GetWebResourceUrl(typeof (OpenIDSel), "OpenIDSelector.Providers.htm"); var fi = new FileInfo(providersURL); // <- exception here //the remaining code is to possibly render the file } This is an example of how the providersURL is: /WebResource.axd?d=kyU2OiYu6lwshLH4pRUCUmG-pzI4xDC1ii9u032IPWwUzMsFzFHzL3veInwslz8Y0&t=634056587753507131 FileInfo is throwing System.ArgumentException: Illegal characters in path.

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  • Apache Wicket exposes attributes

    - by Luke
    I just tried the Apache Wicket "Hello, world" application and I noticed that in the rendered HTML output, Wicket is exposing it's internal attributes. This is what the rendered HTML looks like in the 'view source' of the browser: <html> <body> <span wicket:id="message" id="message">Hello World!</span> </body> </html> How do I get rid of the wicket:id="message" attribute in the rendered HTML output?

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  • Collect DOM elements from external HTML documents

    - by sonofdelphi
    I am trying to write a report-generator to collect user-comments from a list of external HTML files. User-comments are wrapped in < span elements. Can this be done using JavaScript? Here's my attempt: function generateCommentReport() { var files = document.querySelectorAll('td a'); //Files to scan are links in an HTML table var outputWindow = window.open(); //Output browser window for report for(var i = 0; i<files.length; i++){ //Open each file in a browser window win = window.open(); win.location.href = files[i].href; //Scan opened window for 'comment's comments = win.document.getElementsByName('comment'); for(var j=0;j<comments.length;j++){ //Add to output report outputWindow.document.write(comment[i].innerHTML); } } }

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  • XQuery fn:replace not behaving as expected

    - by CoolGravatar
    I have an Excel worksheet in XML format which contains <Cell ss:StyleID="s127"><Data ss:Type="String">A01-Replace</Data></Cell> I want to replace @A01-Replace with a different string. I'm using the XQuery's replace function like so: let $excel := doc("excel.xml") let $test := "another string" return replace($excel, "(A[0-9]+-Replace)", $test) Before calling replace, the variable $excel is valid XML upon output. However, when I output $excel after I call the replace function, all of the XML tags have been stripped, and $excel is a string with the content of the cells as its values. I would like to keep the XML tags there. Any ideas?

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  • Check my anagram code from a job interview in the past.

    - by Michael Dorgan
    Had the following as an interview question a while ago and choked so bad on basic syntax that I failed to advance (once the adrenalin kicks in, coding goes out the window.) Given a list of string, return a list of sets of strings that are anagrams of the input set. i.e. "dog","god", "foo" should return {"dog","god"}. Afterward, I created the code on my own as a sanity check and it's been around now for a bit. I'd welcome input on it to see if I missed anything or if I could have done it much more efficiently. Take it as a chance to improve myself and learn other techniques: void Anagram::doWork(list input, list &output) { typedef list SortType; SortType sortedInput; // sort each string and pair it with the original for(list<string>::iterator i = input.begin(); i != input.end(); ++i) { string tempString(*i); std::sort(tempString.begin(), tempString.end()); sortedInput.push_back(make_pair(*i, tempString)); } // Now step through the new sorted list for(SortType::iterator i = sortedInput.begin(); i != sortedInput.end();) { set<string> newSet; // Assume (hope) we have a match and pre-add the first. newSet.insert(i->first); // Set the secondary iterator one past the outside to prevent // matching the original SortType::iterator j = i; ++j; while(j != sortedInput.end()) { if(i->second == j->second) { // If the string matches, add it to the set and remove it // so that future searches need not worry about it newSet.insert(j->first); j = sortedInput.erase(j); } else { // else, next element ++j; } } // If size is bigger than our original push, we have a match - save it to the output if(newSet.size() > 1) { output.push_back(newSet); } // erase this element and update the iterator i = sortedInput.erase(i); } }

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  • How to check PHP filecode syntax in PHP?

    - by Tower
    Hi, I am in a need of running the PHP parser for PHP code inside PHP. I am on Windows, and I have tried system("C:\\Program Files (x86)\\PHP\\php.exe -l \"C:/Program Files (x86)/Apache/htdocs/a.php\"", $output); var_dump($output); without luck. The parameter -l should check for correct PHP syntax, and throw errors if some problems exist. Basically, I want to do something similar to this picture: That is, to be able to detect errors in code.

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  • Formating with printf in using two functions

    - by user317203
    I am trying to output a document that looks like this. http://pastebin.com/dpBAY8Sb my issue is that I cannot find how to format the output I have to have a floating poing and format the distance between columns. My current code looks something like this. if (defined $longitude){ printf FILE ("%-8s %.6f","",$longitude); }else{ $longitude = ""; printf FILE ("%-20s ",$longitude); } but the extra "" throws off the whole column and it looks like this. pastebin.com/kcwHyNwb

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  • Understanding The Convolution Matrix

    - by Ryan Naddy
    I am learning about the Convolution Matrix, and I understand how they work, but I don't understand how to know before hand what the output of a Matrix will look like. For example lets say I want to add a blur to an image, I could guess 10,000+ different combinations of numbers before I get the correct one. I do know though that this formula will give me a blur effect, but I have no idea why. float[] sharpen = new float[] { 1/9f, 1/9f, 1/9f, 1/9f, 1/9f, 1/9f, 1/9f, 1/9f, 1/9f }; Can anyone either explain to me how this works or point me to some article, that explains this? I would like to know before hand what a possible output of the matrix will be without guessing. Basically I would like to know why do we put that number in the filed, and why not some other number?

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  • php - get content from second pair of quotes in string

    - by Aaron Turecki
    I'm trying to get the contents of the second quotes and only the second quotes from a string. Right now I'm able to get the contents of all three quotes. What am I doing wrong? Is it possible to just print the second value in the output array? Text 2014-06-02 11:48:41.519 -0700 Information 94 NICOLE Client "[WebDirect] (207.230.229.204) [207.230.229.204]" opening database "FMServer_Sample" as "Admin". PHP if (preg_match_all('~(["\'])([^"\']+)\1~', $line, $matches)) $database_names = $matches[2]; print_r($database); Output [WebDirect] (207.230.229.204) [207.230.229.204], FMServer_Sample, Admin

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  • Printing out series of numbers in java

    - by Jay
    hi guys i am just doing some reading for myself to learn java and came across this problem and is currently stuck. i need to print out series of number based on the input given by the user. for example, if input = 5, the output should be as follows @1@22@333@4444@55555 import java.util.*; public class ex5{ public static void main(String[] args){ Scanner kb = new Scanner(System.in); System.out.println("Please type a #: "); int input = kb.nextInt(); for(int i=0;i<input;i++){ if(input==1){ System.out.print("@1"); } if(input==2){ System.out.print("@1@22"); } } } } this doesnt seem to be working because this is the output i get Please type a #: 2 @1@22@1@22 im not sure what to put inside the for loop right now and i dont think i am using the for loop here very well either... any help guys?

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