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  • Efficient alternatives to merge for larger data.frames R

    - by Etienne Low-Décarie
    I am looking for an efficient (both computer resource wise and learning/implementation wise) method to merge two larger (size1 million / 300 KB RData file) data frames. "merge" in base R and "join" in plyr appear to use up all my memory effectively crashing my system. Example load test data frame and try test.merged<-merge(test, test) or test.merged<-join(test, test, type="all") - The following post provides a list of merge and alternatives: How to join data frames in R (inner, outer, left, right)? The following allows object size inspection: https://heuristically.wordpress.com/2010/01/04/r-memory-usage-statistics-variable/ Data produced by anonym

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  • What the best approach to iterate and "store" files over a directory in C (Linux) ?

    - by Andrei Ciobanu
    I have written a function that checks if to files are duplicates or not. This function signature is: int check_dup_memmap(char *f1_name, char *f2_name) It returns: (-1) - If something went wrong; (0) - If the two files are similar; (+1) - If the two files are different; The next step is to write a function that iterates through all the files in a certain directory,apply the previous function, and gives a report on every existing duplicates. Initially I've thought to write a function that generates a file with all the filenames in a certain directory and then, read that file again and gain and compare every two files. Here is that version of the function, that gets all the filenames in a certain directory. void *build_dir_tree(char *dirname, FILE *f) { DIR *cdir = NULL; struct dirent *ent = NULL; struct stat buf; if(f == NULL){ fprintf(stderr, "NULL file submitted. [build_dir_tree].\n"); exit(-1); } if(dirname == NULL){ fprintf(stderr, "NULL dirname submitted. [build_dir_tree].\n"); exit(-1); } if((cdir = opendir(dirname)) == NULL){ char emsg[MFILE_LEN]; sprintf(emsg, "Cannot open dir: %s [build_dir_tree]\t",dirname); perror(emsg); } chdir(dirname); while ((ent = readdir(cdir)) != NULL) { lstat(ent->d_name, &buf); if (S_ISDIR(buf.st_mode)) { if (strcmp(".", ent->d_name) == 0 || strcmp("..", ent->d_name) == 0) { continue; } build_dir_tree(ent->d_name, f); } else{ fprintf(f, "/%s/%s\n",util_get_cwd(),ent->d_name); } } chdir(".."); closedir(cdir); } Still I consider this approach a little inefficient, as I have to parse the file again and again. In your opinion what are other approaches should I follow: Write a datastructure and hold the files instead of writing them in the file ? I think for a directory with a lot of files, the memory will become very fragmented. Hold all the filenames in auto-expanding array, so that I can easy access every file by their index, because they will in a contiguous memory location. Map this file in memory using mmap() ? But mmap may fail, as the file gets to big. Any opinions on this. I want to choose the most efficient path, and access as few resources as possible. This is the requirement of the program... EDIT: Is there a way to get the numbers of files in a certain directory, without iterating through it ?

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  • are runtime linking library globals shared among plugins loaded with dlopen?

    - by conejoroy
    I've a C++ program that links at runtime with, lets say, mylib.so. then, the same program uses dlopen()/dlsym() to load a function from myplugin.so, dynamic library that in turn has dependencies to mylib.so. My question is: will the program AND the function in the plugin access the same globals defined in mydlib.so in the same memory area reserved for the program, or each will be assigned different, unrelated copies in its own memory space? if the latter is the default behaviour, is it possible to change that? Thanks in advance =)!

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  • How to install VMWare ESXi CLI on CentOS 6.0?

    - by weekens
    I'm trying to install VMware-vSphere-CLI-5.0.0-422456.x86_64 onto CentOS 6.0 64bit, but the installer complains: CPAN not able to install following Perl modules on the system. These must be installed manually for use by vSphere CLI: UUID 0.03 or newer I tried to do sudo yum install uuid-perl and also sudo yum install perl-SOAP-Lite perl-Data-Dump perl-Class-MethodMaker perl-Crypt-SSLeay perl-libxml-perl perl-XML-LibXML-Common but this doesn't help. What else can I try to do?

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  • What is the effect on record size of reordering columns in PostgreSQL?

    - by Summer
    Since Postgres can only add columns at the end of tables, I end up re-ordering by adding new columns at the end of the table, setting them equal to existing columns, and then dropping the original columns. So, what does PostgreSQL do with the memory that's freed by dropped columns? Does it automatically re-use the memory, so a single record consumes the same amount of space as it did before? But that would require a re-write of the whole table, so to avoid that, does it just keep a bunch of blank space around in each record? Thanks! ~S

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  • What is faster: multiple `send`s or using buffering?

    - by dauerbaustelle
    I'm playing around with sockets in C/Python and I wonder what is the most efficient way to send headers from a Python dictionary to the client socket. My ideas: use a send call for every header. Pros: No memory allocation needed. Cons: many send calls -- probably error prone; error management should be rather complicated use a buffer. Pros: one send call, error checking a lot easier. Cons: Need a buffer :-) malloc/realloc should be rather slow and using a (too) big buffer to avoid realloc calls wastes memory. Any tips for me? Thanks :-)

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  • Using the windows api and C++, how could I load an exe from the hard drive and run it in its own thread?

    - by returneax
    For the sake of learning I'm trying to do what the OS does when launching a program ie. parsing a PE file and giving it a thread of execution. If I have two exe's one called foo.exe and the other bar.exe, how could I have foo.exe load the contents of bar.exe into memory then have it execute from there in its own thread? I know how to get it into memory using MapViewOfFile or by simple loading the contents on the hard drive into a buffer. I'm assuming simply copying the contents of bar.exe on disk into its own suspended thread and running it wouldn't work. I am semi-familiar with PE file internals. All help is very much appreciated, of course :)

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  • How can I detect endianness on a system where all primitive integer sizes are the same?

    - by Joe Wreschnig
    (This question came out of explaining the details of CHAR_BIT, sizeof, and endianness to someone yesterday. It's entirely hypothetical.) Let's say I'm on a platform where CHAR_BIT is 32, so sizeof(char) == sizeof(short) == sizeof(int) == sizeof(long). I believe this is still a standards-conformant environment. The usual way to detect endianness at runtime (because there is no reliable way to do it at compile time) is to make a union { int i, char c[sizeof(int)] } x; x.i = 1 and see whether x.c[0] or x.c[sizeof(int)-1] got set. But that doesn't work on this platform, as I end up with a char[1]. Is there a way to detect whether such a platform is big-endian or little-endian, at runtime? Obviously it doesn't matter inside this hypothetical system, but one can imagine it is writing to a file, or some kind of memory-mapped area, which another machine reads and reconstructs it according to its (saner) memory model.

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  • Tomcat application: Frequent OutOfMemory PermGen exception while image uploads

    - by rabbit
    Hi, I have a tomcat 6 application which I have set parameters of -Xms512m -Xmx1024m. I thought 1 GB of memory in a 4 GB RAM would be enough, but that is not the case. On application stop/start multiple times (from tomcat manager) and also on image uploads (sometimes) I run into the OutOfMemory PermGen space error and the site stops responding. Should I increase the memory still some more? Is there anything else that I can do to from the tomcat side so that it does not run into the PermGen space issue? Thanks in advance for pointers/tips etc.

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  • How to deal with large result sets with Linq to Entities?

    - by user169867
    I have a fairly complex linq to entities query that I display on a website. It uses paging so I never pull down more than 50 records at a time for display. But I also want to give the user the option to export the full results to Excel or some other file format. My concern is that there could potentially be a large # of records all being loaded into memory at one time to do this. Is there a way to process a linq result set 1 record at a time like you could w/ a datareader so only 1 record is really being kept in memory at a time? I'd appreciate any help. Thanks

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  • SQL Stored Procedure

    - by Nathan
    I am trying to run a stored procedure with a while loop in it using Aqua Data Studio 6.5 and as soon as the SP starts Aqua Data starts consuming an increasing amount of my CPU's memory which makes absolutely no sense to me because everything should be off on the Sybase server I am working with. I have commented out and tested every piece of the SP and narrowed the issue down to the while loop. Can anyone explain to me what is going on? create procedure sp_check_stuff as begin declare @counter numeric (9), @max_id numeric (9), @exists numeric (1), @rows numeric (1) select @max_id = max(id) from my_table set @counter = 0 set @exists = 0 set @rows = 0 while @count <= @max_id begin //More logic which doesn't affect memory usage based //on commenting it out and running the SP set @counter = @counter + 1 set @exists = 0 set @rows = 0 end end return

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  • c++ std::ostringstream vs std::string::append

    - by NickSoft
    In all examples that use some kind of buffering I see they use stream instead of string. How is std::ostringstream and << operator different than using string.append. Which one is faster and which one uses less resourses (memory). One difference I know is that you can output different types into output stream (like integer) rather than the limited types that string::append accepts. Here is an example: std::ostringstream os; os << "Content-Type: " << contentType << ";charset=" << charset << "\r\n"; std::string header = os.str(); vs std::string header("Content-Type: "); header.append(contentType); header.append(";charset="); header.append(charset); header.append("\r\n"); Obviously using stream is shorter, but I think append returns reference to the string so it can be written like this: std::string header("Content-Type: "); header.append(contentType) .append(";charset=") .append(charset) .append("\r\n"); And with output stream you can do: std::string content; ... os << "Content-Length: " << content.length() << "\r\n"; But what about memory usage and speed? Especially when used in a big loop. Update: To be more clear the question is: Which one should I use and why? Is there situations when one is preferred or the other? For performance and memory ... well I think benchmark is the only way since every implementation could be different. Update 2: Well I don't get clear idea what should I use from the answers which means that any of them will do the job, plus vector. Cubbi did nice benchmark with the addition of Dietmar Kühl that the biggest difference is construction of those objects. If you are looking for an answer you should check that too. I'll wait a bit more for other answers (look previous update) and if I don't get one I think I'll accept Tolga's answer because his suggestion to use vector is already done before which means vector should be less resource hungry.

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  • Switching from C++ (with a lot of STL use) to C for interpreter building

    - by wndsr
    I'm switching from C++ to C because I'm rebuilding my toy interpreter. I was used to vectors for dynamic allocation of objects like tokens or instructions of my programs, stacks and mainly strings with all their aspects. Now, in C I'm not going to have all these anymore. I know that I will have to use a lot of memory management, too. I'm completely new to C, I only know the high-level easy-life data structures from the STL, how can I get started with strings and dynamic memory allocation?

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  • Does JavaScript have an equivalent to Perl's DESTROY method?

    - by Eric Strom
    Is there any method that is called or event that is dispatched right before an Element is cleaned up by the JavaScript garbage collector? In Perl I would write: package MyObj; sub new {bless {}} sub DESTROY {print "cleaning up @_\n"} and then later: { my $obj = MyObj->new; # do something with obj } # scope ends, and assuming there are no external references to $obj, # the DESTROY method will be called before the object's memory is freed My target platform is Firefox (and I have no need to support other browsers), so if there is only a Firefox specific way of doing this, that is fine. And a little background: I am writing the Perl module XUL::Gui which serves as a bridge between Perl and Firefox, and I am currently working on plugging a few memory leaks related to DOM Elements sticking around forever, even after they are gone and no more references remain on the Perl side. So I am looking for ways to either figure out when JavaScript Elements will be destroyed, or a way to force JavaScript to cleanup an object.

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  • App like default photo browser in iphone ?

    - by goeff27
    Hi All i am developing a app which contains feature like default photo browser in iphone. I done some what similar to that. but after loading some(near about 10-15) images from remote server,i am receiving memory warning.My requirement is loading image one by one. For this, on scroll view i am putting an images and increasing the contentSize of scroll view. it will work fine. but due to memory warning app quite. Guys, any have any idea to approach for this feature which work similar to photo app without problem? thanks in advance .

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  • PHP Fatal error on line number that doesn't exist

    - by alexantd
    Fatal error: Allowed memory size of 134217728 bytes exhausted (tried to allocate 523800 bytes) in /Library/WebServer/Documents/XMLDataStore.class.php on line 981 The curious thing about this error is not the memory leak, which would be easy enough to troubleshoot. Rather, it is the fact that XMLDataStore.class.php is only 850 lines long, which I have verified in multiple text editors. This is with the PHP 5.3 bundled with Snow Leopard. I'm not using an opcode cache. Here is my php.ini: allow_url_fopen = Off error_reporting = -1 display_errors = 1 display_startup_errors = 1 date.timezone = 'America/Los_Angeles' output_buffering = Off realpath_cache_size = 0k XMLDataStore.class.php has recently been refactored and it used to be longer than 981 lines. It's almost as if PHP has cached a 2-week-old version and is reading that. I'm positive that the current version at /Library/WebServer/Documents/XMLDataStore.class.php is only 850 lines long, though.

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  • java cannot reserver heap size error on windows server

    - by Prad
    HI, I have the following configuration: Server : windows 2003 server (32 bit) java version: 1.5_0_22 I get the following error when executing from command line ( my code is based off eclipse wihch gives the same error) java -XX:MaxPermSize=256m -Xmx512m Error occurred during initialization of VM Could not reserve enough space for object heap Could not create the Java virtual machine. The server has over 20GB physical memory with over 19 GB free right now. It does not give an error upto -Xmx486m I have read other articles about contiguous memory space. There is hardly anything running on this server. Can I validae this in any way? Thanks

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  • Multimap Space Issue: Guava

    - by Arpssss
    In my Java code, I am using Guavas Multimap (com.google.common.collect.Multimap) by using this: Multimap< Integer, Integer Index = HashMultimap.create() Here, Multimap key is some portion of URL and value is another portion of URL (converted into integer). Now, I assign my JVM 2560 Mb (2.5 GB) heap space (by using Xmx and Xms). However, it can only store 9 millions of such (key,value) pairs of integers (approx 10 million). But, theoretically (according to memory occupied by int) it should store more. Can anybody help me, 1) Why is this happening (means Multimap is taking lots of space) ? I checked my code with out inserting pairs in Multimap, it takes only 1/2 MB space. 2) Is there any other way or home-baked solution to solve this space issue ? More clearly, how to solve this memory issue ? Thanks in advance and any idea is perfectly OK for me.

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  • Why in Objective-C, we use self = [super init] instead of just [super init]?

    - by ????
    In a book, I saw that if a subclass is overriding a superclass's method, we may have self = [super init]; First, is this supposed to be done in the subclass's init method? Second, I wonder why the call is not just [super init]; ? I mean, at the time of calling init, the memory is allocated by alloc already (I think by [Foobar alloc] where Foobar is the subclass's name. So can't we just call [super init] to initialize the member variables? Why do we have to get the return value of init and assign to self? I mean, before calling [super init], self should be pointing to a valid memory allocation chuck... so why assigning something to self again? (if assigning, won't [super init] just return self's existing value?)

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  • Where does Firefox store the opened windows/tabs/urls for Session Restore after a crash?

    - by jens
    In which location and file does Firefox save the last windows I had opened (when Firefox crashed)? I have a complete "hot dump" copy of a file system and need to restore the state Firefox was when the system crashed, but I cannot restore the full backup itself. I can only extract the files of Firefox, but I do not know in which files I have to search for the urls that were last opened when the snapshot of the whole file system was done.

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  • Allocation Target of std::aligned_storage (stack or heap?)

    - by Zenikoder
    I've been trying to get my head around the TR1 addition known as aligned_storage. Whilst reading the following documents N2165, N3190 and N2140 I can't for the life of me see a statement where it clearly describes stack or heap nature of the memory being used. I've had a look at the implementation provided by msvc2010, boost and gcc they all provide a stack based solution centered around the use of a union. In short: Is the memory type (stack or heap) used by aligned_storage implementation defined or is it always meant to be stack based? and, What the is the specific document that defines/determines that?

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  • XML Processing on iPhone: What is the best option?

    - by gonso
    Hello Im building a new version of an iPhone application and Im wondering if I should review how my app communicates with the server. My iPhone client sends and receives XML over HTTP requests. To send the information I use ASIHTTPRequest framework. I "manually" build the XML request by appending strings. To parse the response Im using a NSXMLParser. My question is if I have better options to A) Create an XML string from a memory object. B) Create a memory object from the XML string. Is there anything like JAXB to marshal XML into object? Thanks Gonso

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  • What would happen to GC if I run process with priority = RealTime?

    - by Bobb
    I have a C# app which runs with priority RealTime. It was all fine until I made few hectic changes in past 2 days. Now it runs out of memory in few hours. I am trying to find whether it is a memory leak I created of this is because I consume lot more objects than before and GC simply cant collect them because it runs with same priority. My question is - what could happen to GC when it tries to collect objects in application with RealTime priority (there is also at least one thread running with Highest thread priority)? (P.S. by realtime priority I mean Process.GetCurrentProcess().PriorityClass = ProcessPriorityClass.RealTime) Sorry forgot to tell. GC is in Server mode

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