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• Speech recognition plugin Runtime Error: Unhandled Exception. What could possibly cause it?

  - by manuel

  I'm writing a plugin (dll file) for speech recognition, and I'm creating a WinForm as its interface/dialog. When I run the plugin and click a button to start the initialization, I get an unhandled exception. Below is the complete details of it. See the end of this message for details on invoking just-in-time (JIT) debugging instead of this dialog box. ***** Exception Text ******* System.ArgumentException: Value does not fall within the expected range. at System.Speech.Internal.SapiInterop.SapiProxy.MTAThread.Invoke2(VoidDelegate pfn) at System.Speech.Internal.SapiInterop.SapiRecognizer.SetInput(Object input, Boolean allowFormatChanges) at System.Speech.Recognition.RecognizerBase.SetInputToDefaultAudioDevice() at System.Speech.Recognition.SpeechRecognitionEngine.SetInputToDefaultAudioDevice() at gen_myplugin.Dialog.init() at gen_myplugin.Dialog.btnSpeak_Click(Object sender, EventArgs e) at System.Windows.Forms.Control.OnClick(EventArgs e) at System.Windows.Forms.Button.OnClick(EventArgs e) at System.Windows.Forms.Button.OnMouseUp(MouseEventArgs mevent) at System.Windows.Forms.Control.WmMouseUp(Message& m, MouseButtons button, Int32 clicks) at System.Windows.Forms.Control.WndProc(Message& m) at System.Windows.Forms.ButtonBase.WndProc(Message& m) at System.Windows.Forms.Button.WndProc(Message& m) at System.Windows.Forms.Control.ControlNativeWindow.OnMessage(Message& m) at System.Windows.Forms.Control.ControlNativeWindow.WndProc(Message& m) at System.Windows.Forms.NativeWindow.Callback(IntPtr hWnd, Int32 msg, IntPtr wparam, IntPtr lparam) ***** Loaded Assemblies ******* mscorlib Assembly Version: 2.0.0.0 Win32 Version: 2.0.50727.3603 (GDR.050727-3600) CodeBase: file:///c:/WINDOWS/Microsoft.NET/Framework/v2.0.50727/mscorlib.dll ---------------------------------------- gen_speechquery Assembly Version: 1.0.3755.878 Win32 Version: CodeBase: file:///C:/Program%20Files/Winamp/Plugins/gen_speechquery.dll ---------------------------------------- msvcm90 Assembly Version: 9.0.30729.1 Win32 Version: 9.00.30729.1 CodeBase: file:///C:/WINDOWS/WinSxS/x86_Microsoft.VC90.CRT_1fc8b3b9a1e18e3b_9.0.30729.1_x-ww_6f74963e/msvcm90.dll ---------------------------------------- System.Windows.Forms Assembly Version: 2.0.0.0 Win32 Version: 2.0.50727.3053 (netfxsp.050727-3000) CodeBase: file:///C:/WINDOWS/assembly/GAC_MSIL/System.Windows.Forms/2.0.0.0__b77a5c561934e089/System.Windows.Forms.dll ---------------------------------------- System Assembly Version: 2.0.0.0 Win32 Version: 2.0.50727.3053 (netfxsp.050727-3000) CodeBase: file:///C:/WINDOWS/assembly/GAC_MSIL/System/2.0.0.0__b77a5c561934e089/System.dll ---------------------------------------- System.Drawing Assembly Version: 2.0.0.0 Win32 Version: 2.0.50727.3053 (netfxsp.050727-3000) CodeBase: file:///C:/WINDOWS/assembly/GAC_MSIL/System.Drawing/2.0.0.0__b03f5f7f11d50a3a/System.Drawing.dll ---------------------------------------- System.Speech Assembly Version: 3.0.0.0 Win32 Version: 3.0.6920.1109 (lh_tools_devdiv_wpf.071009-1109) CodeBase: file:///C:/WINDOWS/assembly/GAC_MSIL/System.Speech/3.0.0.0__31bf3856ad364e35/System.Speech.dll ***** JIT Debugging ******* To enable just-in-time (JIT) debugging, the .config file for this application or computer (machine.config) must have the jitDebugging value set in the system.windows.forms section. The application must also be compiled with debugging enabled. For example: When JIT debugging is enabled, any unhandled exception will be sent to the JIT debugger registered on the computer rather than be handled by this dialog box.

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• Modeling distribution of performance measurements

  - by peterchen

  How would you mathematically model the distribution of repeated real life performance measurements - "Real life" meaning you are not just looping over the code in question, but it is just a short snippet within a large application running in a typical user scenario? My experience shows that you usually have a peak around the average execution time that can be modeled adequately with a Gaussian distribution. In addition, there's a "long tail" containing outliers - often with a multiple of the average time. (The behavior is understandable considering the factors contributing to first execution penalty). My goal is to model aggregate values that reasonably reflect this, and can be calculated from aggregate values (like for the Gaussian, calculate mu and sigma from N, sum of values and sum of squares). In other terms, number of repetitions is unlimited, but memory and calculation requirements should be minimized. A normal Gaussian distribution can't model the long tail appropriately and will have the average biased strongly even by a very small percentage of outliers. I am looking for ideas, especially if this has been attempted/analysed before. I've checked various distributions models, and I think I could work out something, but my statistics is rusty and I might end up with an overblown solution. Oh, a complete shrink-wrapped solution would be fine, too ;) Other aspects / ideas: Sometimes you get "two humps" distributions, which would be acceptable in my scenario with a single mu/sigma covering both, but ideally would be identified separately. Extrapolating this, another approach would be a "floating probability density calculation" that uses only a limited buffer and adjusts automatically to the range (due to the long tail, bins may not be spaced evenly) - haven't found anything, but with some assumptions about the distribution it should be possible in principle. Why (since it was asked) - For a complex process we need to make guarantees such as "only 0.1% of runs exceed a limit of 3 seconds, and the average processing time is 2.8 seconds". The performance of an isolated piece of code can be very different from a normal run-time environment involving varying levels of disk and network access, background services, scheduled events that occur within a day, etc. This can be solved trivially by accumulating all data. However, to accumulate this data in production, the data produced needs to be limited. For analysis of isolated pieces of code, a gaussian deviation plus first run penalty is ok. That doesn't work anymore for the distributions found above. [edit] I've already got very good answers (and finally - maybe - some time to work on this). I'm starting a bounty to look for more input / ideas.

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• int, short, byte performance in back-to-back for-loops

  - by runrunraygun

  (background: http://stackoverflow.com/questions/1097467/why-should-i-use-int-instead-of-a-byte-or-short-in-c) To satisfy my own curiosity about the pros and cons of using the "appropriate size" integer vs the "optimized" integer i wrote the following code which reinforced what I previously held true about int performance in .Net (and which is explained in the link above) which is that it is optimized for int performance rather than short or byte. DateTime t; long a, b, c; t = DateTime.Now; for (int index = 0; index < 127; index++) { Console.WriteLine(index.ToString()); } a = DateTime.Now.Ticks - t.Ticks; t = DateTime.Now; for (short index = 0; index < 127; index++) { Console.WriteLine(index.ToString()); } b=DateTime.Now.Ticks - t.Ticks; t = DateTime.Now; for (byte index = 0; index < 127; index++) { Console.WriteLine(index.ToString()); } c=DateTime.Now.Ticks - t.Ticks; Console.WriteLine(a.ToString()); Console.WriteLine(b.ToString()); Console.WriteLine(c.ToString()); This gives roughly consistent results in the area of... ~950000 ~2000000 ~1700000 which is in line with what i would expect to see. However when I try repeating the loops for each data type like this... t = DateTime.Now; for (int index = 0; index < 127; index++) { Console.WriteLine(index.ToString()); } for (int index = 0; index < 127; index++) { Console.WriteLine(index.ToString()); } for (int index = 0; index < 127; index++) { Console.WriteLine(index.ToString()); } a = DateTime.Now.Ticks - t.Ticks; the numbers are more like... ~4500000 ~3100000 ~300000 Which I find puzzling. Can anyone offer an explanation? NOTE: In the interest of compairing like for like i've limited the loops to 127 because of the range of the byte value type. Also this is an act of curiosity not production code micro-optimization.

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• How to iterate over all the page breaks in an Excel 2003 worksheet via COM

  - by Martin

  I've been trying to retrieve the locations of all the page breaks on a given Excel 2003 worksheet over COM. Here's an example of the kind of thing I'm trying to do: Excel::HPageBreaksPtr pHPageBreaks = pSheet->GetHPageBreaks(); long count = pHPageBreaks->Count; for (long i=0; i < count; ++i) { Excel::HPageBreakPtr pHPageBreak = pHPageBreaks->GetItem(i+1); Excel::RangePtr pLocation = pHPageBreak->GetLocation(); printf("Page break at row %d\n", pLocation->Row); pLocation.Release(); pHPageBreak.Release(); } pHPageBreaks.Release(); I expect this to print out the row numbers of each of the horizontal page breaks in pSheet. The problem I'm having is that although count correctly indicates the number of page breaks in the worksheet, I can only ever seem to retrieve the first one. On the second run through the loop, calling pHPageBreaks->GetItem(i) throws an exception, with error number 0x8002000b, "invalid index". Attempting to use pHPageBreaks->Get_NewEnum() to get an enumerator to iterate over the collection also fails with the same error, immediately on the call to Get_NewEnum(). I've looked around for a solution, and the closest thing I've found so far is http://support.microsoft.com/kb/210663/en-us. I have tried activating various cells beyond the page breaks, including the cells just beyond the range to be printed, as well as the lower-right cell (IV65536), but it didn't help. If somebody can tell me how to get Excel to return the locations of all of the page breaks in a sheet, that would be awesome! Thank you. @Joel: Yes, I have tried displaying the user interface, and then setting ScreenUpdating to true - it produced the same results. Also, I have since tried combinations of setting pSheet->PrintArea to the entire worksheet and/or calling pSheet->ResetAllPageBreaks() before my call to get the HPageBreaks collection, which didn't help either. @Joel: I've used pSheet->UsedRange to determine the row to scroll past, and Excel does scroll past all the horizontal breaks, but I'm still having the same issue when I try to access the second one. Unfortunately, switching to Excel 2007 did not help either.

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• DevExpress Reporting Session Issue

  - by LeeHull

  This is pretty complicated so I will explain what is going on. I have created an ASP.NET website for displaying images, the way we use our images is, we have a database table that contains the URL where the images are located, however we recently started moving them from the filesystem, and storing them directly into the database as binary, but since we don't want to break older applications, we currently store them both places till they are all updated. Alright, the website I'm working on, is just a reporting website to display images by a date range, I have created an HTTPHandler to display the image, depending if they exist in the database as binary, if the row is DBNull, I just grab the URL from the other table instead, I just read the image, convert it into a byte[] and write it to the response, so it is interpreted as an image. I have created a page to display the report using DevExpress Reporting, I just query the report, save the dataset into a session, and the report reads the session to bind the report, i also have a picturebox in the report bound to "Handler.ashx?id=ImageID", this is because I am not binding a URL to the image, since it is a byte[] Also since there could be a report with 10000+ images, I am reading the dataset from the session inside the handler and just pulling out the image from the passed in ImageID, I am doing this to prevent connecting to the database each and every row. Now the strange thing is, Report loads fine.. data is loading, I have paging on the devexpress report viewer, it is loading the images fine, however here is the issue. When I print or export, I am not getting any images, I am debugged and found out the Session.Count is 0 when it tries to print or export, which is strange since there is more than just the dataset in the session. I have also added IRequiresSessionState to allow sessions in the handler, but the session count is still 0, I have changing the Handler to an aspx page, same issue. Any ideas or suggestions on logic changes, I'm all ears.. this is a very difficult situation since I have to display the images from database as a string AND byte[] since one can be URL and other be the image bytes, but I also can't slam the database on connection calls each row either. I have also reported the issue to DevExpress and they are clueless as well, since they don't dispose the session in the exporting process.

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• Sockets server design advice

  - by Rob

  We are writing a socket server in c# and need some advice on the design. Background: Clients (from mobile devices) connect to our server app and we leave their socket open so we can send data back down to them whenever we need to. The amount of data varies but we generally send/receive data from each client every few seconds, so it's quite intensive. The amount of simultaneous connections can range from 50-500 (and more in the future). We have already written a server app using async sockets and it works, however we've come across some stumbling blocks and we need to make sure that what we're doing is correct. We have a collection which holds our client states (we have no socket/connection pool at the moment, should we?). Each time a client connects we create a socket and then wait for them to send us some data and in receiveCallBack we add their clientstate object to our connections dictionary (once we have verified who they are). When a client object then signs off we shutdown their socket and then close it as well as remove them from our collection of clients dictionary. Presumably everything happens in the right order, everything works as expected. However, almost everyday it stops accepting connections, or so we think, either that or it connects but doesn't actually do anything past that and we can't work out why it's just stopping. There are few things that we'r'e unsure about 1) Should we be creating some kind of connection pool as opposed to just a dictionary of client sockets 2) What happens to the sockets that connect but then don't get added to our dictionary, they just linger around in memory doing nothing, should we create ANOTHER dictionary that holds the sockets as soon as they are created? 3) What's the best way of finding if clients are no longer connected? We've read some many methods but we're not sure of the best one to use, send data or read data, if so how? 4) If we loop through the connections dictonary to check for disposed clients, should we be locking the dictionary, if so how does this affect other clients objects trying to use it at the same time, will it throw an error or just wait? 5) We often get disposedSocketException within ReceiveCallBack method at random times, does this mean we are safe to remove that socket from the collection? We can't seem to find any production type examples which show any of this working. Any advice would be greatly received

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• Mercurial hook to disallow committing large binary files

  - by hekevintran

  I want to have a Mercurial hook that will run before committing a transaction that will abort the transaction if a binary file being committed is greater than 1 megabyte. I found the following code which works fine except for one problem. If my changeset involves removing a file, this hook will throw an exception. The hook (I'm using pretxncommit = python:checksize.newbinsize): from mercurial import context, util from mercurial.i18n import _ import mercurial.node as dpynode '''hooks to forbid adding binary file over a given size Ensure the PYTHONPATH is pointing where hg_checksize.py is and setup your repo .hg/hgrc like this: [hooks] pretxncommit = python:checksize.newbinsize pretxnchangegroup = python:checksize.newbinsize preoutgoing = python:checksize.nopull [limits] maxnewbinsize = 10240 ''' def newbinsize(ui, repo, node=None, **kwargs): '''forbid to add binary files over a given size''' forbid = False # default limit is 10 MB limit = int(ui.config('limits', 'maxnewbinsize', 10000000)) tip = context.changectx(repo, 'tip').rev() ctx = context.changectx(repo, node) for rev in range(ctx.rev(), tip+1): ctx = context.changectx(repo, rev) print ctx.files() for f in ctx.files(): fctx = ctx.filectx(f) filecontent = fctx.data() # check only for new files if not fctx.parents(): if len(filecontent) > limit and util.binary(filecontent): msg = 'new binary file %s of %s is too large: %ld > %ld\n' hname = dpynode.short(ctx.node()) ui.write(_(msg) % (f, hname, len(filecontent), limit)) forbid = True return forbid The exception: $ hg commit -m 'commit message' error: pretxncommit hook raised an exception: apps/helpers/templatetags/include_extends.py@bced6272d8f4: not found in manifest transaction abort! rollback completed abort: apps/helpers/templatetags/include_extends.py@bced6272d8f4: not found in manifest! I'm not familiar with writing Mercurial hooks, so I'm pretty confused about what's going on. Why does the hook care that a file was removed if hg already knows about it? Is there a way to fix this hook so that it works all the time? Update (solved): I modified the hook to filter out files that were removed in the changeset. def newbinsize(ui, repo, node=None, **kwargs): '''forbid to add binary files over a given size''' forbid = False # default limit is 10 MB limit = int(ui.config('limits', 'maxnewbinsize', 10000000)) ctx = repo[node] for rev in xrange(ctx.rev(), len(repo)): ctx = context.changectx(repo, rev) # do not check the size of files that have been removed # files that have been removed do not have filecontexts # to test for whether a file was removed, test for the existence of a filecontext filecontexts = list(ctx) def file_was_removed(f): """Returns True if the file was removed""" if f not in filecontexts: return True else: return False for f in itertools.ifilterfalse(file_was_removed, ctx.files()): fctx = ctx.filectx(f) filecontent = fctx.data() # check only for new files if not fctx.parents(): if len(filecontent) > limit and util.binary(filecontent): msg = 'new binary file %s of %s is too large: %ld > %ld\n' hname = dpynode.short(ctx.node()) ui.write(_(msg) % (f, hname, len(filecontent), limit)) forbid = True return forbid

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• Web Safe Area (optimal resolution) for web app design

  - by M.A.X

  I'm in the process of designing a new web app and I'm wondering for what 'web safe area' should I optimize the app layout and design. I did some investigation and thinking on my own but wanted to share this to see what the general opinion is. Here is what I found: Optimal Display Resolution: w3schools web stats seems to be the most referenced source (however they state that these are results from their site and is biased towards tech savvy users) http://www.w3counter.com/globalstats.php (aggregate data from something like 15,000 different sites that use their tracking services) StatCounter Global Stats Display Resolution (Stats are based on aggregate data collected by StatCounter on a sample exceeding 15 billion pageviews per month collected from across the StatCounter network of more than 3 million websites) NetMarketShare Screen Resolutions (marketshare.hitslink.com) (a web analytics consulting firm, they get data from browsers of site visitors to their on-demand network of live stats customers. The data is compiled from approximately 160 million visitors per month) Display Resolution Summary: There is a bit of variation between the above sources but in general as of Jan 2011 looks like 1024x768 is about 20%, while ~85% have a higher resolution of at least 1280x768 (1280x800 is the most common of these with 15-20% of total web, depending on the source; 1280x1024 and 1366x768 follow behind with 9-14% of the share). My guess would be that the higher resolution values will be even more common if we filter on North America, and even higher if we filter on N.American corporate users (unfortunately I couldn't find any free geographically filtered statistics). Another point to note is that the 1024x768 desktop user population is likely lower than the aforementioned 20%, seeing as the iPad (1024x768 native display) is likely propping up those number. My recommendation would be to optimize around the 1280x768 constraint (*note: 1280x768 is actually a relatively rare resolution, but I think it's a valid constraint range considering that 1366x768 is relatively common and 1280 is the most common horizontal resolution). Browser + OS Constraints: To further add to the constraints we have to subtract the space taken up by the browser (assuming IE, which is the most space consuming) and the OS (assuming WinXP-Win7): Win7 has the biggest taskbar footprint at a height of 40px (XP's and Vista's is 30px) The default IE8 view uses up 25px at the bottom of the screen with the status bar and a further 120px at the top of the screen with the windows title bar and the browser UI (assuming the default 'favorites' toolbar is present, it would instead be 91px without the favorites toolbar). Assuming no scrollbar, we also loose a total of 4px horizontally for the window outline. This means that we are left with 583px of vertical space and 1276px of horizontal. In other words, a Web Safe Area of 1276 x 583 Is this a correct line of thinking? I tried to Google some design best practices but most still talk about designing around 1024x768 which seems to be quickly disappearing. Any help on this would be greatly appreciated! Thanks.

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• CellTable + AsyncListViewAdapter<T> + SimplePager<T>, stuck with 'loading' bar when paging

  - by Jaroslav Záruba

  Hi I'm trying to make CellTable, AsyncListViewAdapter<T> and SimplePager<T> working together. I managed to display my data, but whenever I click either "go to start" or "go to end" button I get that 'loading' indicator which stays there till the end of days. (And AsyncListViewAdapter<T>.onRangeChanged doesn't even get called this time.) I went through the code-snippets in this thread, but I can't see nothing suspicions in what I've been doing. Is there some obvious answer to a rookie mistake? I shrinked my variable names, hopefully it won't wrap too much. protected class MyAsyncAdapter extends AsyncListViewAdapter<DTO> { @Override protected void onRangeChanged(ListView<DTO> v) { // doesn't get called on go2start/go2end :( Range r = v.getRange(); fetchData(r.getStart(), r.getLength()); } } private void addTable() { // table: CellTable<DTO> table = new CellTable<DTO>(10); table.addColumn(new Column<DTO, String>(new TextCell()) { @Override public String getValue(DTO namespace) { return namespace.getName(); } }, "Name"); // pager: SimplePager<DTO> pager = new SimplePager<DTO>(table); table.setPager(pager); adapter = new MyAsyncAdapter(); adapter.addView(table); // does not make any difference: // adapter.updateDataSize(0, false); // adapter.updateDataSize(10, true); VerticalPanel vPanel = new VerticalPanel(); vPanel.add(table); vPanel.add(pager); RootLayoutPanel.get().add(vPanel); } // success-handler of my fetching AsyncCallback @Override public void onSuccess(List<DTO> data) { // AsyncCallback<List<DTO>> has start field adapter.updateViewData(start, data.size(), data); if(data.size() < length) adapter.updateDataSize(start + data.size(), true); } Regards J. Záruba

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• Really "wow" them in the interview

  - by Juliet

  Let me put it to you this way: I'm a top-notch programmer, but a notoriously bad interviewee. I've flunked 3 interviews consecutively because I get so nervous that my voice tightens at least 2 octaves higher and I start visibly shaking -- mind you, I can handle whatever technical questions the interviewer throws at me in that state, but I think it looks bad to come off as a quivering, squeaky-voiced young woman during a job interview. I've just got the personality type of a shy computer programmer. No matter how technical I am, I'm going to get passed up in favor of a smooth talker. I have another interview coming up shortly, and I want to really impress the company. Here are my trouble spots: What can I do to be less nervous during my interview? I always get really excited when I hear I have a face-to-face interview, but get more and more anxious as D-Day the interview approaches. My employers wants me to explain what I used to do at my prior employment. I'm a very chatty person and tend to talk/squeak for 10 minutes at a time. How long or short should I time my answers? On that note, when I'm explaining what I did at prior jobs, what exactly is my interviewer looking for? At some point, my interviewer will ask "do you have any questions for me while you're here?" I should, but what kinds of questions should I ask to show that I'm interested in being employed? My interviewer always asks why I'm looking for a new job. The real reason is that my present salary is $27K/yr [Edit to add: and I've yet to get a raise since I started], and I want to make more money -- otherwise the work environment is fine. How do I sugarcoat "I want to make more money" into something that sounds nicer? I have only one prior programmer job, and I've worked there for 18 months, but I have the skill of someone with 4 to 6 years of experience. What can I say to compete against applicants with more work experience? I took a low-paying $27K/yr programming job just to get my foot in IT, and I've been trying to leverage that job as a stepping stone to better opportunities. I get interviews because I consistently out-score senior-level developers in aptitude tests, and my desired salary range is right in the ballpark of what most companies want to offer. Unfortunately, while I've been a programming as a hobby for 10 years and I'm geared to graduate with my BA in Comp Sci in May '09, employers see me as a junior-level programmer with no degree. I want to prove them wrong and get a job that matches my skill level. I'd appreciate any advice anyone has to offer, especially if they can help me get a better job in the process.

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• Scipy Negative Distance? What?

  - by disappearedng

  I have a input file which are all floating point numbers to 4 decimal place. i.e. 13359 0.0000 0.0000 0.0001 0.0001 0.0002` 0.0003 0.0007 ... (the first is the id). My class uses the loadVectorsFromFile method which multiplies it by 10000 and then int() these numbers. On top of that, I also loop through each vector to ensure that there are no negative values inside. However, when I perform _hclustering, I am continually seeing the error, "Linkage Z contains negative values". I seriously think this is a bug because: I checked my values, the values are no where small enough or big enough to approach the limits of the floating point numbers and the formula that I used to derive the values in the file uses absolute value (my input is DEFINITELY right). Can someone enligten me as to why I am seeing this weird error? What is going on that is causing this negative distance error? ===== def loadVectorsFromFile(self, limit, loc, assertAllPositive=True, inflate=True): """Inflate to prevent "negative" distance, we use 4 decimal points, so *10000 """ vectors = {} self.winfo("Each vector is set to have %d limit in length" % limit) with open( loc ) as inf: for line in filter(None, inf.read().split('\n')): l = line.split('\t') if limit: scores = map(float, l[1:limit+1]) else: scores = map(float, l[1:]) if inflate: vectors[ l[0]] = map( lambda x: int(x*10000), scores) #int might save space else: vectors[ l[0]] = scores if assertAllPositive: #Assert that it has no negative value for dirID, l in vectors.iteritems(): if reduce(operator.or_, map( lambda x: x < 0, l)): self.werror( "Vector %s has negative values!" % dirID) return vectors def main( self, inputDir, outputDir, limit=0, inFname="data.vectors.all", mappingFname='all.id.features.group.intermediate'): """ Loads vector from a file and start clustering INPUT vectors is { featureID: tfidfVector (list), } """ IDFeatureDic = loadIdFeatureGroupDicFromIntermediate( pjoin(self.configDir, mappingFname)) if not os.path.exists(outputDir): os.makedirs(outputDir) vectors = self.loadVectorsFromFile( limit, pjoin( inputDir, inFname)) for threshold in map( lambda x:float(x)/30, range(20,30)): clusters = self._hclustering(threshold, vectors) if clusters: outputLoc = pjoin(outputDir, "threshold.%s.result" % str(threshold)) with open(outputLoc, 'w') as outf: for clusterNo, cluster in clusters.iteritems(): outf.write('%s\n' % str(clusterNo)) for featureID in cluster: feature, group = IDFeatureDic[featureID] outline = "%s\t%s\n" % (feature, group) outf.write(outline.encode('utf-8')) outf.write("\n") else: continue def _hclustering(self, threshold, vectors): """function which you should call to vary the threshold vectors: { featureID: [ tfidf scores, tfidf score, .. ] """ clusters = defaultdict(list) if len(vectors) > 1: try: results = hierarchy.fclusterdata( vectors.values(), threshold, metric='cosine') except ValueError, e: self.werror("_hclustering: %s" % str(e)) return False for i, featureID in enumerate( vectors.keys()):

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• Scared of Calculus - Required to pass Differential Calculus as part of my Computer science major

  - by ke3pup

  Hi guys I'm finishing my Computer science degree in university but my fear of maths (lack of background knowledge) made me to leave all my maths units til' the very end which is now. i either take them on and pass or have to give up. I've passed all my programming units easily but knowing my poor maths skills won't do i've been staying clear of the maths units. I have to pass Differential Calculus and Linear Algebra first. With a help of book named "Linear Algebra: A Modern Introduction" i'm finding myself on track and i think i can pass the Linear Algebra unit. But with differential calculus i can't find a book to help me. They're either too advanced or just too simple for what i have to learn. The things i'm required to know for this units are: Set notation, the real number line, Complex numbers in cartesian form. Complex plane, modulus. Complex numbers in polar form. De Moivre’s Theorem. Complex powers and nth roots. Definition of ei? and ez for z complex. Applications to trigonometry. Revision of domain and range of a function Working in R3. Curves and surfaces. Functions of 2 variables. Level curves.Partial derivatives and tangent planes. The derivative as a difference quotient. Geometric significance of the derivative. Discussion of limit. Higher order partial derivatives. Limits of f(x,y). Continuity. Maxima and minima of f(x,y). The chain rule. Implicit differentiation. Directional derivatives and the gradient. Limit laws, l’Hoˆpital’s rule, composition law. Definition of sinh and cosh and their inverses. Taylor polynomials. The remainder term. Taylor series. Is there a book to help me get on track with the above? Being a student i can't buy too many books hence why i'm looking for a book that covers topics I need to know. The University library has a fairly limited collection which i took as loan but didn't find useful as it was too complex.

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• Is this a situation where Qt Model/View architecture is not useful?

  - by csmithmaui

  Hi, I am writing a GUI based application where I read a string of values from serial port every few seconds and I need to display most of the values in some type graphical indicator(I was thinking of QprogressBar maybe) that displays the range and the value. Some of the other data that I am parsing from the string are the date and fault codes. Also, the data is hierarchical. I wanted to use the model/view architecture of Qt because I have been interested in MVC stuff for a while but have never quite wrapped my brain around how to implement it very well. As of now, I have subclassed QAbstractItemModel and in the model I read the serial port and wrap the items parsed from the string in a Tree data structure. I can view all of the data in a QtreeView with no issues. I have also began to subclass QAbstractItemView to build my custom view with all of the Graphical Indicators and such. This is where I am getting stuck. It seems to me that in order for me to design a view that knows how to display my custom model the view needs to know exactly how all of the data in the model is organized. Doesn't that defeat the purpose of Model/View? The QTreeView I tested the model with is basically just displaying the model as it is setup in the Tree structure but I don't want to do that because the data is not all of the same type. Is the type of data or the way you would like to present it to the user a determining factor in whether or not you should use this architecture? I always assumed it was just always better to design in an MVC style. It seems to me like it might have been better to just subclass QWidget and then read in from the serial port and update all of subwidgets(graphical indicators, labels, etc...) from the subclass. Essentially, do everything in one class. Does anybody understand this issue that can explain to me either what I am missing or why I shouldn't be doing it this way. As of now I am a little confused. Thanks so much for any help!

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• mysql index optimization for a table with multiple indexes that index some of the same columns

  - by Sean

  I have a table that stores some basic data about visitor sessions on third party web sites. This is its structure: id, site_id, unixtime, unixtime_last, ip_address, uid There are four indexes: id, site_id/unixtime, site_id/ip_address, and site_id/uid There are many different types of ways that we query this table, and all of them are specific to the site_id. The index with unixtime is used to display the list of visitors for a given date or time range. The other two are used to find all visits from an IP address or a "uid" (a unique cookie value created for each visitor), as well as determining if this is a new visitor or a returning visitor. Obviously storing site_id inside 3 indexes is inefficient for both write speed and storage, but I see no way around it, since I need to be able to quickly query this data for a given specific site_id. Any ideas on making this more efficient? I don't really understand B-trees besides some very basic stuff, but it's more efficient to have the left-most column of an index be the one with the least variance - correct? Because I considered having the site_id being the second column of the index for both ip_address and uid but I think that would make the index less efficient since the IP and UID are going to vary more than the site ID will, because we only have about 8000 unique sites per database server, but millions of unique visitors across all ~8000 sites on a daily basis. I've also considered removing site_id from the IP and UID indexes completely, since the chances of the same visitor going to multiple sites that share the same database server are quite small, but in cases where this does happen, I fear it could be quite slow to determine if this is a new visitor to this site_id or not. The query would be something like: select id from sessions where uid = 'value' and site_id = 123 limit 1 ... so if this visitor had visited this site before, it would only need to find one row with this site_id before it stopped. This wouldn't be super fast necessarily, but acceptably fast. But say we have a site that gets 500,000 visitors a day, and a particular visitor loves this site and goes there 10 times a day. Now they happen to hit another site on the same database server for the first time. The above query could take quite a long time to search through all of the potentially thousands of rows for this UID, scattered all over the disk, since it wouldn't be finding one for this site ID. Any insight on making this as efficient as possible would be appreciated :) Update - this is a MyISAM table with MySQL 5.0. My concerns are both with performance as well as storage space. This table is both read and write heavy. If I had to choose between performance and storage, my biggest concern is performance - but both are important. We use memcached heavily in all areas of our service, but that's not an excuse to not care about the database design. I want the database to be as efficient as possible.

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• Save File to Sharepoint Server using JAX-WS

  - by Evan Porter

  I'm trying to save a file to a Sharepoint server using JAX-WS. The web service call is reporting a success, but the file doesn't show up. I used this command (from a WinXP) to generate the Java code to make the JAX-WS call: wsimport -keep -extension -Xnocompile http://hostname/sites/teamname/_vti_bin/Copy.asmx?WSDL I get a handle on the web service which I called port using the following: CopySoap port = null; if (userName != null && password != null) { Copy service = new Copy(); port = service.getCopySoap(); ((BindingProvider) port).getRequestContext().put(BindingProvider.USERNAME_PROPERTY, userName); ((BindingProvider) port).getRequestContext().put(BindingProvider.PASSWORD_PROPERTY, password); } else { throw new Exception("Holy Frijolé! Null userName and/or password!"); } I called the web service using the following: port.copyIntoItems(sourceUrl, destUrlCollection, fields , "Contents of the file".getBytes(), copyIntoItemsResult, copyResultCollection) The sourceUrl and the only url in destUrlCollection equals "hostname/sites/teamname/Tech Docs/Sub Folder". The FieldInformationCollection object named fields contains only one FieldInformation. The FieldInformation object has "HelloWorld.txt" as the value for displayName, internalName and value. The type property is set to FieldType.FILE. The id property is set to (java.util.UUID.randomUUID()).toString(). The call to copyIntoItems returns successfuly; copyIntoItemsResult contains a value of 0 and the only CopyResult object set in copyResultCollection has an error code of "SUCCESS" with a null error message. When I look into the "Tech Docs" library on Sharepoint, in the "Sub Folder" there's no file there. Why wouldn't it tell me what I did wrong? Did I just miss a step? Update (Feb 26th, 2011) I've changed my FieldInformation object's displayName and internalName properties to be "Title" as suggested. Still no joy, but a step in the right direction. After playing around with the urls for a bit, I got these results: With both the sourceUrl and the only destination URL equivalent, with no protocol, I get the SUCCESS response but no actual document appears in the document library. With both of the URLs equivalent but with an "http://" protocol specified, I get an UNKNOWN error with "Object reference not set to an instance of an object." as the message. With the source URL an empty string or null, I get an UNKNOWN error with " Value does not fall within the expected range." as the error message.

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• Decompressing a very large serialized object and managing memory

  - by Mike_G

  I have an object that contains tons of data used for reports. In order to get this object from the server to the client I first serialize the object in a memory stream, then compress it using the Gzip stream of .NET. I then send the compressed object as a byte[] to the client. The problem is on some clients, when they get the byte[] and try to decompress and deserialize the object, a System.OutOfMemory exception is thrown. Ive read that this exception can be caused by new() a bunch of objects, or holding on to a bunch of strings. Both of these are happening during the deserialization process. So my question is: How do I prevent the exception (any good strategies)? The client needs all of the data, and ive trimmed down the number of strings as much as i can. edit: here is the code i am using to serialize/compress (implemented as extension methods) public static byte[] SerializeObject<T>(this object obj, T serializer) where T: XmlObjectSerializer { Type t = obj.GetType(); if (!Attribute.IsDefined(t, typeof(DataContractAttribute))) return null; byte[] initialBytes; using (MemoryStream stream = new MemoryStream()) { serializer.WriteObject(stream, obj); initialBytes = stream.ToArray(); } return initialBytes; } public static byte[] CompressObject<T>(this object obj, T serializer) where T : XmlObjectSerializer { Type t = obj.GetType(); if(!Attribute.IsDefined(t, typeof(DataContractAttribute))) return null; byte[] initialBytes = obj.SerializeObject(serializer); byte[] compressedBytes; using (MemoryStream stream = new MemoryStream(initialBytes)) { using (MemoryStream output = new MemoryStream()) { using (GZipStream zipper = new GZipStream(output, CompressionMode.Compress)) { Pump(stream, zipper); } compressedBytes = output.ToArray(); } } return compressedBytes; } internal static void Pump(Stream input, Stream output) { byte[] bytes = new byte[4096]; int n; while ((n = input.Read(bytes, 0, bytes.Length)) != 0) { output.Write(bytes, 0, n); } } And here is my code for decompress/deserialize: public static T DeSerializeObject<T,TU>(this byte[] serializedObject, TU deserializer) where TU: XmlObjectSerializer { using (MemoryStream stream = new MemoryStream(serializedObject)) { return (T)deserializer.ReadObject(stream); } } public static T DecompressObject<T, TU>(this byte[] compressedBytes, TU deserializer) where TU: XmlObjectSerializer { byte[] decompressedBytes; using(MemoryStream stream = new MemoryStream(compressedBytes)) { using(MemoryStream output = new MemoryStream()) { using(GZipStream zipper = new GZipStream(stream, CompressionMode.Decompress)) { ObjectExtensions.Pump(zipper, output); } decompressedBytes = output.ToArray(); } } return decompressedBytes.DeSerializeObject<T, TU>(deserializer); } The object that I am passing is a wrapper object, it just contains all the relevant objects that hold the data. The number of objects can be a lot (depending on the reports date range), but ive seen as many as 25k strings. One thing i did forget to mention is I am using WCF, and since the inner objects are passed individually through other WCF calls, I am using the DataContract serializer, and all my objects are marked with the DataContract attribute.

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• Corner Cases, Unexpected and Unusual Matlab

  - by Mikhail

  Over the years, reading others code, I encountered and collected some examples of Matlab syntax which can be at first unusual and counterintuitive. Please, feel free to comment or complement this list. I verified it r2006a. set([], 'Background:Color','red') Matlab is very forgiving sometimes. In this case, setting properties to an array of objects works also with nonsense properties, at least when the array is empty. myArray([1,round(end/2)]) This use of end keyword may seem unclean but is sometimes very handy instead of using length(myArray). any([]) ~= all([]) Surprisigly any([]) returns false and all([]) returns true. And I always thought that all is stronger then any. EDIT: with not empty argument all() returns true for a subset of values for which any() returns true (e.g. truth table). This means that any() false implies all() false. This simple rule is being violated by Matlab with [] as argument. Loren also blogged about it. Select(Range(ExcelComObj)) Procedural style COM object method dispatch. Do not wonder that exist('Select') returns zero! [myString, myCell] Matlab makes in this case an implicit cast of string variable myString to cell type {myString}. It works, also if I would not expect it to do so. [double(1.8), uint8(123)] => 2 123 Another cast example. Everybody would probably expect uint8 value being cast to double but Mathworks have another opinion. a = 5; b = a(); It looks silly but you can call a variable with round brackets. Actually it makes sense because this way you can execute a function given its handle. a = {'aa', 'bb' 'cc', 'dd'}; Surprsisingly this code neither returns a vector nor rises an error but defins matrix, using just code layout. It is probably a relict from ancient times. set(hobj, {'BackgroundColor','ForegroundColor'},{'red','blue'}) This code does what you probably expect it to do. That function set accepts a struct as its second argument is a known fact and makes sense, and this sintax is just a cell2struct away. Equvalence rules are sometimes unexpected at first. For example 'A'==65 returns true (although for C-experts it is self-evident). About which further unexpected/unusual Matlab features are you aware?

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• How effective are technical test(s) and is it necessary?

  - by The Elite Gentleman

  Hi everyone, I recently took a Java technical test (for a company who wanted are looking for senior java developers) and, funny enough, I only realised the technical terms of what I've been doing all along after I've written the test. I'm not too IT jargon when it comes to development but I can pretty much code and create solutions unaware that I'm using design pattern (or the specifics of that design pattern) or technology. I learned things such as JMS, Frameworks, etc. while programming at home and having to google stuff online to problems I have. Others e.g. IoC, Surrogates in Databases, etc., I have used extensively without knowing that it had a name for it. Do you think that these technical test are effective and why? What interesting questions did you find that boggled your brains out while the clock kept ticking? Seeing that IT is vastly evolving at a rapid rate, do we have to constantly be updated with new terms that comes out? Some questions I was asked : What object oriented principle is violated by this architectural mechanism for dot notation? Is indexing tables effective for range query or point query search? What is ThreadLocal and what is it used for? Method overloading vs Method overriding. What is the difference between the 2? What is dynamic binding? Now, imagine my poor head trying to understand these jargons (considering I use it almost everyday) PS The question was not a programming question, where you have a problem and write code to solve it. Rather, a thinking type question and you write answers (against the clock). Update I clearly didn't come out clearly as I should have. There are those that are technically "book smart" but with very little hands-on experience and vice versa. So, the question (in connection to what I've asked) is that are these technical test seeking "book smart" people or people with lots of hands-on experience (some who are not that well clued up with too much book-smart jargons). How effective is it then, for companies to look for developers if most of the questions are too terminology-centric? (if that's the correct term, :))

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• Of these 3 methods for reading linked lists from shared memory, why is the 3rd fastest?

  - by Joseph Garvin

  I have a 'server' program that updates many linked lists in shared memory in response to external events. I want client programs to notice an update on any of the lists as quickly as possible (lowest latency). The server marks a linked list's node's state_ as FILLED once its data is filled in and its next pointer has been set to a valid location. Until then, its state_ is NOT_FILLED_YET. I am using memory barriers to make sure that clients don't see the state_ as FILLED before the data within is actually ready (and it seems to work, I never see corrupt data). Also, state_ is volatile to be sure the compiler doesn't lift the client's checking of it out of loops. Keeping the server code exactly the same, I've come up with 3 different methods for the client to scan the linked lists for changes. The question is: Why is the 3rd method fastest? Method 1: Round robin over all the linked lists (called 'channels') continuously, looking to see if any nodes have changed to 'FILLED': void method_one() { std::vector<Data*> channel_cursors; for(ChannelList::iterator i = channel_list.begin(); i != channel_list.end(); ++i) { Data* current_item = static_cast<Data*>(i->get(segment)->tail_.get(segment)); channel_cursors.push_back(current_item); } while(true) { for(std::size_t i = 0; i < channel_list.size(); ++i) { Data* current_item = channel_cursors[i]; ACQUIRE_MEMORY_BARRIER; if(current_item->state_ == NOT_FILLED_YET) { continue; } log_latency(current_item->tv_sec_, current_item->tv_usec_); channel_cursors[i] = static_cast<Data*>(current_item->next_.get(segment)); } } } Method 1 gave very low latency when then number of channels was small. But when the number of channels grew (250K+) it became very slow because of looping over all the channels. So I tried... Method 2: Give each linked list an ID. Keep a separate 'update list' to the side. Every time one of the linked lists is updated, push its ID on to the update list. Now we just need to monitor the single update list, and check the IDs we get from it. void method_two() { std::vector<Data*> channel_cursors; for(ChannelList::iterator i = channel_list.begin(); i != channel_list.end(); ++i) { Data* current_item = static_cast<Data*>(i->get(segment)->tail_.get(segment)); channel_cursors.push_back(current_item); } UpdateID* update_cursor = static_cast<UpdateID*>(update_channel.tail_.get(segment)); while(true) { if(update_cursor->state_ == NOT_FILLED_YET) { continue; } ::uint32_t update_id = update_cursor->list_id_; Data* current_item = channel_cursors[update_id]; if(current_item->state_ == NOT_FILLED_YET) { std::cerr << "This should never print." << std::endl; // it doesn't continue; } log_latency(current_item->tv_sec_, current_item->tv_usec_); channel_cursors[update_id] = static_cast<Data*>(current_item->next_.get(segment)); update_cursor = static_cast<UpdateID*>(update_cursor->next_.get(segment)); } } Method 2 gave TERRIBLE latency. Whereas Method 1 might give under 10us latency, Method 2 would inexplicably often given 8ms latency! Using gettimeofday it appears that the change in update_cursor-state_ was very slow to propogate from the server's view to the client's (I'm on a multicore box, so I assume the delay is due to cache). So I tried a hybrid approach... Method 3: Keep the update list. But loop over all the channels continuously, and within each iteration check if the update list has updated. If it has, go with the number pushed onto it. If it hasn't, check the channel we've currently iterated to. void method_three() { std::vector<Data*> channel_cursors; for(ChannelList::iterator i = channel_list.begin(); i != channel_list.end(); ++i) { Data* current_item = static_cast<Data*>(i->get(segment)->tail_.get(segment)); channel_cursors.push_back(current_item); } UpdateID* update_cursor = static_cast<UpdateID*>(update_channel.tail_.get(segment)); while(true) { for(std::size_t i = 0; i < channel_list.size(); ++i) { std::size_t idx = i; ACQUIRE_MEMORY_BARRIER; if(update_cursor->state_ != NOT_FILLED_YET) { //std::cerr << "Found via update" << std::endl; i--; idx = update_cursor->list_id_; update_cursor = static_cast<UpdateID*>(update_cursor->next_.get(segment)); } Data* current_item = channel_cursors[idx]; ACQUIRE_MEMORY_BARRIER; if(current_item->state_ == NOT_FILLED_YET) { continue; } found_an_update = true; log_latency(current_item->tv_sec_, current_item->tv_usec_); channel_cursors[idx] = static_cast<Data*>(current_item->next_.get(segment)); } } } The latency of this method was as good as Method 1, but scaled to large numbers of channels. The problem is, I have no clue why. Just to throw a wrench in things: if I uncomment the 'found via update' part, it prints between EVERY LATENCY LOG MESSAGE. Which means things are only ever found on the update list! So I don't understand how this method can be faster than method 2. The full, compilable code (requires GCC and boost-1.41) that generates random strings as test data is at: http://pastebin.com/e3HuL0nr

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• C# Spell checker Problem

  - by reggie

  I've incorporated spell check into my win forms C# project. This is my code. public void CheckSpelling() { try { // declare local variables to track error count // and information int SpellingErrors = 0; string ErrorCountMessage = string.Empty; // create an instance of a word application Microsoft.Office.Interop.Word.Application WordApp = new Microsoft.Office.Interop.Word.Application(); // hide the MS Word document during the spellcheck //WordApp.WindowState = WdWindowState.wdWindowStateMinimize; // check for zero length content in text area if (this.Text.Length > 0) { WordApp.Visible = false; // create an instance of a word document _Document WordDoc = WordApp.Documents.Add(ref emptyItem, ref emptyItem, ref emptyItem, ref oFalse); // load the content written into the word doc WordDoc.Words.First.InsertBefore(this.Text); // collect errors form new temporary document set to contain // the content of this control Microsoft.Office.Interop.Word.ProofreadingErrors docErrors = WordDoc.SpellingErrors; SpellingErrors = docErrors.Count; // execute spell check; assumes no custom dictionaries WordDoc.CheckSpelling(ref oNothing, ref oIgnoreUpperCase, ref oAlwaysSuggest, ref oNothing, ref oNothing, ref oNothing, ref oNothing, ref oNothing, ref oNothing, ref oNothing, ref oNothing, ref oNothing); // format a string to contain a report of the errors detected ErrorCountMessage = "Spell check complete; errors detected: " + SpellingErrors; // return corrected text to control's text area object first = 0; object last = WordDoc.Characters.Count - 1; this.Text = WordDoc.Range(ref first, ref last).Text; } else { // if nothing was typed into the control, abort and inform user ErrorCountMessage = "Unable to spell check an empty text box."; } WordApp.Quit(ref oFalse, ref emptyItem, ref emptyItem); System.Runtime.InteropServices.Marshal.ReleaseComObject(WordApp); // return report on errors corrected // - could either display from the control or change this to // - return a string which the caller could use as desired. // MessageBox.Show(ErrorCountMessage, "Finished Spelling Check"); } catch (Exception e) { MessageBox.Show(e.ToString()); } } The spell checker works well, the only problem is when I try to move the spell checker the main form blurs up for some reason. Also when I close the spell checker the main form is back to normal. It seems like it is opening up Microsoft word then hiding the window, only allowing the spell checker to be seen. Please help.

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• Using cascade in NHibernate

  - by Tyler

  I have two classes, call them Monkey and Banana, with a one-to-many bidirectional relationship. Monkey monkey = new Monkey(); Banana banana = new Banana(); monkey.Bananas.Add(banana); banana.Monkey = monkey; hibernateService.Save(banana); When I run that chunk of code, I want both monkey and banana to be persisted. However, it's only persisting both when I explicitly save the monkey and not vice versa. Initially, this made sense since only my Monkey.hbm.xml had a mapping with cascade="all". <set name="Bananas" inverse="true" cascade="all"> <key column="Id"/> <one-to-many class="Banana"/> </set> I figured I just needed to add the following to my Banana.hbm.xml file: <many-to-one name="Monkey" column="Id" cascade="all" /> Unfortunately, this resulted in a Parameter index is out of range error when I tried to run the snippet of code. I investigated this error and found this post, but I still don't see what I'm doing wrong. I have the relationship mapped once on each side as far as I can tell. For full disclosure, here are the two mapping files: Monkey.hbm.xml <class name="Monkey" table="monkies" lazy="true"> <id name="Id"> <generator class="increment" /> </id> <property name="Name" /> <set name="Bananas" inverse="true" cascade="all"> <key column="Id"/> <one-to-many class="Banana"/> </set> </class> Banana.hbm.xml <class name="Banana" table="bananas" lazy="true"> <id name="Id"> <generator class="increment" /> </id> <property name="Name" /> <many-to-one name="Monkey" column="Id" cascade="all" /> </class>

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• Constraint Satisfaction Problem

  - by Carl Smotricz

  I'm struggling my way through Artificial Intelligence: A Modern Approach in order to alleviate my natural stupidity. In trying to solve some of the exercises, I've come up against the "Who Owns the Zebra" problem, Exercise 5.13 in Chapter 5. This has been a topic here on SO but the responses mostly addressed the question "how would you solve this if you had a free choice of problem solving software available?" I accept that Prolog is a very appropriate programming language for this kind of problem, and there are some fine packages available, e.g. in Python as shown by the top-ranked answer and also standalone. Alas, none of this is helping me "tough it out" in a way as outlined by the book. The book appears to suggest building a set of dual or perhaps global constraints, and then implementing some of the algorithms mentioned to find a solution. I'm having a lot of trouble coming up with a set of constraints suitable for modelling the problem. I'm studying this on my own so I don't have access to a professor or TA to get me over the hump - this is where I'm asking for your help. I see little similarity to the examples in the chapter. I was eager to build dual constraints and started out by creating (the logical equivalent of) 25 variables: nationality1, nationality2, nationality3, ... nationality5, pet1, pet2, pet3, ... pet5, drink1 ... drink5 and so on, where the number was indicative of the house's position. This is fine for building the unary constraints, e.g. The Norwegian lives in the first house: nationality1 = { :norway }. But most of the constraints are a combination of two such variables through a common house number, e.g. The Swede has a dog: nationality[n] = { :sweden } AND pet[n] = { :dog } where n can range from 1 to 5, obviously. Or stated another way: nationality1 = { :sweden } AND pet1 = { :dog } XOR nationality2 = { :sweden } AND pet2 = { :dog } XOR nationality3 = { :sweden } AND pet3 = { :dog } XOR nationality4 = { :sweden } AND pet4 = { :dog } XOR nationality5 = { :sweden } AND pet5 = { :dog } ...which has a decidedly different feel to it than the "list of tuples" advocated by the book: ( X1, X2, X3 = { val1, val2, val3 }, { val4, val5, val6 }, ... ) I'm not looking for a solution per se; I'm looking for a start on how to model this problem in a way that's compatible with the book's approach. Any help appreciated.

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• agent-based simulation: performance issue: Python vs NetLogo & Repast

  - by max

  I'm replicating a small piece of Sugarscape agent simulation model in Python 3. I found the performance of my code is ~3 times slower than that of NetLogo. Is it likely the problem with my code, or can it be the inherent limitation of Python? Obviously, this is just a fragment of the code, but that's where Python spends two-thirds of the run-time. I hope if I wrote something really inefficient it might show up in this fragment: UP = (0, -1) RIGHT = (1, 0) DOWN = (0, 1) LEFT = (-1, 0) all_directions = [UP, DOWN, RIGHT, LEFT] # point is just a tuple (x, y) def look_around(self): max_sugar_point = self.point max_sugar = self.world.sugar_map[self.point].level min_range = 0 random.shuffle(self.all_directions) for r in range(1, self.vision+1): for d in self.all_directions: p = ((self.point[0] + r * d[0]) % self.world.surface.length, (self.point[1] + r * d[1]) % self.world.surface.height) if self.world.occupied(p): # checks if p is in a lookup table (dict) continue if self.world.sugar_map[p].level > max_sugar: max_sugar = self.world.sugar_map[p].level max_sugar_point = p if max_sugar_point is not self.point: self.move(max_sugar_point) Roughly equivalent code in NetLogo (this fragment does a bit more than the Python function above): ; -- The SugarScape growth and motion procedures. -- to M ; Motion rule (page 25) locals [ps p v d] set ps (patches at-points neighborhood) with [count turtles-here = 0] if (count ps > 0) [ set v psugar-of max-one-of ps [psugar] ; v is max sugar w/in vision set ps ps with [psugar = v] ; ps is legal sites w/ v sugar set d distance min-one-of ps [distance myself] ; d is min dist from me to ps agents set p random-one-of ps with [distance myself = d] ; p is one of the min dist patches if (psugar >= v and includeMyPatch?) [set p patch-here] setxy pxcor-of p pycor-of p ; jump to p set sugar sugar + psugar-of p ; consume its sugar ask p [setpsugar 0] ; .. setting its sugar to 0 ] set sugar sugar - metabolism ; eat sugar (metabolism) set age age + 1 end On my computer, the Python code takes 15.5 sec to run 1000 steps; on the same laptop, the NetLogo simulation running in Java inside the browser finishes 1000 steps in less than 6 sec. EDIT: Just checked Repast, using Java implementation. And it's also about the same as NetLogo at 5.4 sec. Recent comparisons between Java and Python suggest no advantage to Java, so I guess it's just my code that's to blame? EDIT: I understand MASON is supposed to be even faster than Repast, and yet it still runs Java in the end.

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• jQuery, get datas in AJAX (done) then, display them as star (error)

  - by Tristan

  Hello, In my website, there are 2 steps : I get values from another domain with AJAX, it's numbers 100% working Then, i want to display those numbers in stars with this plugin (http://stackoverflow.com/questions/1987524/turn-a-number-into-star-rating-display-using-jquery-and-css) The error : the stars plugin does not work for the value i recieve from my ajax request, but it's working for my values for my domain which are not JS manipulated you can see a demo here http://www.esl.eu/fr/test/test_atome/?killcache=true PS: the data in ajax are provided in JSON-P so i wrote a parser which look like this: jQuery.ajax({ type: "get", dataType: "jsonp", url: "http://www.foo.com/", data: {demandeur: "monkey" }, cache: true, success: function(data, textStatus, XMLHttpRequest){ var obj = null, length = data.length; for (var i = 0; i < length; i++) { widget = "<p>AVERAGES<p>"; widget += "<p><span class='stars'>"; widget += data[i].services; widget += "</span></p>"; widget += "<p><span class='stars'>"; widget += data[i].qualite; widget += "</span></p>"; jQuery('#gotserv').html(widget); } } }); }); Then i have the star plugin after this function : $.fn.stars = function() { $(this).each(function() { // Get the value var val = parseFloat($(this).html()); // Make sure that the value is in 0 - 5 range val = val 5 ? 5 : (val < 0 ? 0 : val); // Calculate physical size var size = 16 * val; // Create stars holder var stars = $(''); // Adjust yellow stars' width stars.find('span').width(size); // Replace the numerical value with stars $(this).replaceWith(stars); }); I hope you understand, i don't know if i'm clear Thank you

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• Python/Biophysics- Trying to code a simple stochastic simulation!

  - by user359597

  Hey guys- I'm trying to figure out what to make of the following code- this is not the clear, intuitive python I've been learning. Was it written in C or something then wrapped in a python fxn? The code I wrote (not shown) is using the same math, but I couldn't figure out how to write a conditional loop. If anyone could explain/decipher/clean this up, I'd be really appreciative. I mean- is this 'good' python- or does it look funky? I'm brand new to this- but it's like the order of the fxns is messed up? I understand Gillespie's- I've successfully coded several simpler simulations. So in a nutshell- good code-(pythonic)? order? c? improvements? am i being an idiot? The code shown is the 'answer,' to the following question from a biophysics text (petri-net not shown and honestly not necessary to understand problem): "In a programming language of your choice, implement Gillespie’s First Reaction Algorithm to study the temporal behaviour of the reaction A---B in which the transition from A to B can only take place if another compound, C, is present, and where C dynamically interconverts with D, as modelled in the Petri-net below. Assume that there are 100 molecules of A, 1 of C, and no B or D present at the start of the reaction. Set kAB to 0.1 s-1 and both kCD and kDC to 1.0 s-1. Simulate the behaviour of the system over 100 s." def sim(): # Set the rate constants for all transitions kAB = 0.1 kCD = 1.0 kDC = 1.0 # Set up the initial state A = 100 B = 0 C = 1 D = 0 # Set the start and end times t = 0.0 tEnd = 100.0 print "Time\t", "Transition\t", "A\t", "B\t", "C\t", "D" # Compute the first interval transition, interval = transitionData(A, B, C, D, kAB, kCD, kDC) # Loop until the end time is exceded or no transition can fire any more while t <= tEnd and transition >= 0: print t, '\t', transition, '\t', A, '\t', B, '\t', C, '\t', D t += interval if transition == 0: A -= 1 B += 1 if transition == 1: C -= 1 D += 1 if transition == 2: C += 1 D -= 1 transition, interval = transitionData(A, B, C, D, kAB, kCD, kDC) def transitionData(A, B, C, D, kAB, kCD, kDC): """ Returns nTransition, the number of the firing transition (0: A->B, 1: C->D, 2: D->C), and interval, the interval between the time of the previous transition and that of the current one. """ RAB = kAB * A * C RCD = kCD * C RDC = kDC * D dt = [-1.0, -1.0, -1.0] if RAB > 0.0: dt[0] = -math.log(1.0 - random.random())/RAB if RCD > 0.0: dt[1] = -math.log(1.0 - random.random())/RCD if RDC > 0.0: dt[2] = -math.log(1.0 - random.random())/RDC interval = 1e36 transition = -1 for n in range(len(dt)): if dt[n] > 0.0 and dt[n] < interval: interval = dt[n] transition = n return transition, interval if __name__ == '__main__': sim()

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