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  • Jinja2 returns "None" string for Google App Engine models

    - by Brian M. Hunt
    Google App Engine models, likeso: from google.appengine.ext.db import Model class M(): name = db.StringProperty() Then in a Jinja2 template called from a Django view with an in instance of M passed in as m: The name of this M is {{ m.name }}. When m is initialized without name being set, the following is printed: The name of this M is None. The preferable and expected output (and the output when using Django templates) would be/is: The name of this M is . Do you know why this is happening, and how to get the preferred & expected output?

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  • Howto install distribute for Python 3

    - by chris.nullptr
    I am trying to install distribute using ActivePython 3.1.2 on Windows. Running python distribute_setup.py as described at the cheese shop give me: No setuptools distribution found running install ... File "build\src\setuptools\command\easy_install.py", line 16, in <module> from setuptools.sandbox import run_setup File "build\src\setuptools\sandbox.py", line 164, in <module> fromlist=['__name__']).__file__) AttributeError: 'module' object has no attribute '__file__' Something went wrong during the installation. See the error message above. Is there possibly an unknown dependency that I'm missing?

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  • How to pass variables using Unittest suite

    - by chrissygormley
    Hello I have test's using unittest. I have a test suite and I am trying to pass variables through into each of the tests. The below code shows the test suite used. class suite(): def suite(self): #Function stores all the modules to be tested modules_to_test = ('testmodule1', 'testmodule2') alltests = unittest.TestSuite() for module in map(__import__, modules_to_test): alltests.addTest(unittest.findTestCases(module)) return alltests It calls tests, I would like to know how to pass variables into the tests from this class. An example test script is below: class TestThis(unittest.TestCase): def runTest(self): assertEqual('1', '1') class TestThisTestSuite(unittest.TestSuite): # Tests to be tested by test suite def makeTestThisTestSuite(): suite = unittest.TestSuite() suite.addTest("TestThis") return suite def suite(): return unittest.makeSuite(TestThis) if __name__ == '__main__': unittest.main() So from the class suite() I would like to enter in a value to change the value that is in assert value. Eg. assertEqual(self.value, '1'). I have tried sys.argv for unittest and it doesn't seem to work. Thanks for any help.

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  • How can I prompt for input using Selenium/Webdriver and use the result?

    - by Tempus
    I would like to allow for user input and make some decisions based on it. If I do this: driver.execute_script("prompt('Enter smth','smth')") I get a nice prompt, but I cannot use it's value. Is there any way of showing an input box to the user, and use the value typed there? EDIT: This is my script: from selenium.webdriver import Firefox if __name__ == "__main__": driver = Firefox() driver.execute_script("window.promptResponse=prompt('Enter smth','smth')") a = driver.execute_script("var win = this.browserbot.getUserWindow(); return win.promptResponse") print "got back %s" % a And this exits with the following exception: a = driver.execute_script("var win = this.browserbot.getUserWindow(); return win.promptResponse") File "c:\python26\lib\site-packages\selenium-2.12.1-py2.6.egg\selenium\webdriver\remote\webdriver.py", line 385, in ex ecute_script {'script': script, 'args':converted_args})['value'] File "c:\python26\lib\site-packages\selenium-2.12.1-py2.6.egg\selenium\webdriver\remote\webdriver.py", line 153, in ex ecute self.error_handler.check_response(response) File "c:\python26\lib\site-packages\selenium-2.12.1-py2.6.egg\selenium\webdriver\remote\errorhandler.py", line 110, in check_response if 'message' in value: TypeError: argument of type 'NoneType' is not iterable What am I not doing right?

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  • django 'if' statement improperly formatted

    - by Zayatzz
    Im getting strangest error in django so far: 'if' statement improperly formatted Template that raises the error is this: {% if diff >= 0 %} <span class="pos">+{{ diff }} {% else %} <span class="neg">-{{ diff }} {% endif %} </span> <span>{{ a }}</span> view that has a and diff in context is this: def add(request, kaart_id): if request.is_ajax() and request.method == 'POST': x = Kaart.objects.get(id=kaart_id) x.pos += 1 x.save x = Kaart.objects.get(id=kaart_id) from django.utils import simplejson diff = x.pos - x.neg a = "(+1)" context = { 'diff':diff, 'a':a } return render_to_response('sum.html', context, context_instance=RequestContext(request)) It does not matter what equation i use in if, , =, ==.. they all raise the same error. and as far as i can tell its all by the book: http://docs.djangoproject.com/en/dev/ref/templates/builtins/#id5 Alan.

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  • java regex illegal escape character error not occurring from command line arguments

    - by Shades88
    This simple regex program import java.util.regex.*; class Regex { public static void main(String [] args) { System.out.println(args[0]); // #1 Pattern p = Pattern.compile(args[0]); // #2 Matcher m = p.matcher(args[1]); boolean b = false; while(b = m.find()) { System.out.println(m.start()+" "+m.group()); } } } invoked by java regex "\d" "sfdd1" compiles and runs fine. But if #1 is replaced by Pattern p = Pattern.compile("\d");, it gives compiler error saying illegal escape character. In #1 I also tried printing the pattern specified in the command line arguments. It prints \d, which means it is just getting replaced by \d in #2. So then why won't it throw any exception? At the end it's string argument that Pattern.compile() is taking, doesn't it detect illegal escape character then? Can someone please explain why is this behaviour?

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  • Integrate Weld CDI into a JSF 1.2 EJB Application on jboss 6 AS

    - by ich-bin-drin
    Hi, since two evenings i am trying to integrate weld CDI into an EJB 3.1 Application with JSF 1.2. I simply tried to call a with @Named annotated controller in an JSF page. The problem is, that no exception is thrown, when i deploy the project and also no exception is thrown when i call the page. The simple example contains only: The Controller: import javax.inject.Named; @Named public class HelloWorldController { public HelloWorldController(){ System.out.println("Hello World!"); } public String getMessage() { return "Hello Weld World"; } } And it's call: <h1><h:outputText value="#{helloWorldController.message}" /></h1> THX

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  • How can I connect to a mail server using SMTP over SSL using Python?

    - by jakecar
    Hello, So I have been having a hard time sending email from my school's email address. It is SSL and I could only find this code online by Matt Butcher that works with SSL: import smtplib, socket version = "1.00" all = ['SMTPSSLException', 'SMTP_SSL'] SSMTP_PORT = 465 class SMTPSSLException(smtplib.SMTPException): """Base class for exceptions resulting from SSL negotiation.""" class SMTP_SSL (smtplib.SMTP): """This class provides SSL access to an SMTP server. SMTP over SSL typical listens on port 465. Unlike StartTLS, SMTP over SSL makes an SSL connection before doing a helo/ehlo. All transactions, then, are done over an encrypted channel. This class is a simple subclass of the smtplib.SMTP class that comes with Python. It overrides the connect() method to use an SSL socket, and it overrides the starttles() function to throw an error (you can't do starttls within an SSL session). """ certfile = None keyfile = None def __init__(self, host='', port=0, local_hostname=None, keyfile=None, certfile=None): """Initialize a new SSL SMTP object. If specified, `host' is the name of the remote host to which this object will connect. If specified, `port' specifies the port (on `host') to which this object will connect. `local_hostname' is the name of the localhost. By default, the value of socket.getfqdn() is used. An SMTPConnectError is raised if the SMTP host does not respond correctly. An SMTPSSLError is raised if SSL negotiation fails. Warning: This object uses socket.ssl(), which does not do client-side verification of the server's cert. """ self.certfile = certfile self.keyfile = keyfile smtplib.SMTP.__init__(self, host, port, local_hostname) def connect(self, host='localhost', port=0): """Connect to an SMTP server using SSL. `host' is localhost by default. Port will be set to 465 (the default SSL SMTP port) if no port is specified. If the host name ends with a colon (`:') followed by a number, that suffix will be stripped off and the number interpreted as the port number to use. This will override the `port' parameter. Note: This method is automatically invoked by __init__, if a host is specified during instantiation. """ # MB: Most of this (Except for the socket connection code) is from # the SMTP.connect() method. I changed only the bare minimum for the # sake of compatibility. if not port and (host.find(':') == host.rfind(':')): i = host.rfind(':') if i >= 0: host, port = host[:i], host[i+1:] try: port = int(port) except ValueError: raise socket.error, "nonnumeric port" if not port: port = SSMTP_PORT if self.debuglevel > 0: print>>stderr, 'connect:', (host, port) msg = "getaddrinfo returns an empty list" self.sock = None for res in socket.getaddrinfo(host, port, 0, socket.SOCK_STREAM): af, socktype, proto, canonname, sa = res try: self.sock = socket.socket(af, socktype, proto) if self.debuglevel > 0: print>>stderr, 'connect:', (host, port) self.sock.connect(sa) # MB: Make the SSL connection. sslobj = socket.ssl(self.sock, self.keyfile, self.certfile) except socket.error, msg: if self.debuglevel > 0: print>>stderr, 'connect fail:', (host, port) if self.sock: self.sock.close() self.sock = None continue break if not self.sock: raise socket.error, msg # MB: Now set up fake socket and fake file classes. # Thanks to the design of smtplib, this is all we need to do # to get SSL working with all other methods. self.sock = smtplib.SSLFakeSocket(self.sock, sslobj) self.file = smtplib.SSLFakeFile(sslobj); (code, msg) = self.getreply() if self.debuglevel > 0: print>>stderr, "connect:", msg return (code, msg) def setkeyfile(self, keyfile): """Set the absolute path to a file containing a private key. This method will only be effective if it is called before connect(). This key will be used to make the SSL connection.""" self.keyfile = keyfile def setcertfile(self, certfile): """Set the absolute path to a file containing a x.509 certificate. This method will only be effective if it is called before connect(). This certificate will be used to make the SSL connection.""" self.certfile = certfile def starttls(): """Raises an exception. You cannot do StartTLS inside of an ssl session. Calling starttls() will return an SMTPSSLException""" raise SMTPSSLException, "Cannot perform StartTLS within SSL session." And then my code: import ssmtplib conn = ssmtplib.SMTP_SSL('HOST') conn.login('USERNAME','PW') conn.ehlo() conn.sendmail('FROM_EMAIL', 'TO_EMAIL', "MESSAGE") conn.close() And got this error: /Users/Jake/Desktop/Beth's Program/ssmtplib.py:116: DeprecationWarning: socket.ssl() is deprecated. Use ssl.wrap_socket() instead. sslobj = socket.ssl(self.sock, self.keyfile, self.certfile) Traceback (most recent call last): File "emailer.py", line 5, in conn = ssmtplib.SMTP_SSL('HOST') File "/Users/Jake/Desktop/Beth's Program/ssmtplib.py", line 79, in init smtplib.SMTP.init(self, host, port, local_hostname) File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/smtplib.py", line 239, in init (code, msg) = self.connect(host, port) File "/Users/Jake/Desktop/Beth's Program/ssmtplib.py", line 131, in connect self.sock = smtplib.SSLFakeSocket(self.sock, sslobj) AttributeError: 'module' object has no attribute 'SSLFakeSocket' Thank you!

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  • Grails Unit Tests: Why does this statement fail?

    - by leeand00
    I've developed in Java in the past, and now I'm trying to learn Grails/Groovy using this slightly dated tutorial. import grails.test.* class DateTagLibTests extends TagLibUnitTestCase { def dateTagLib protected void setUp() { super.setUp() dateTagLib = new DateTagLib() } protected void tearDown() { super.tearDown() } void testThisYear() { String expected = Calendar.getInstance().get(Calendar.YEAR) // NOTE: This statement fails assertEquals("the years dont match and I dont know why.", expected, dateTagLib.thisYear()) } } DateTagLibTests.groovy (Note: this TagLibUnitTestCase is for Grails 1.2.1 and not the version used in the tutorial) For some reason the above test fails with: expected:<2010 but was:<2010 I've tried replacing the test above with the following alternate version of the test, and the test passes just fine: void testThisYear() { String expected = Calendar.getInstance().get(Calendar.YEAR) String actual = dateTagLib.thisYear() // NOTE: The following two assertions work: assertEquals("the years don\'t match", expected, actual) assertTrue("the years don\'t match", expected.equals(actual)) } These two versions of the test are basically the same thing right? Unless there's something new in Grails 1.2.1 or Groovy that I'm not understanding. They should be of the same type because the values are both the value returned by Calendar.getInstance().get(Calendar.YEAR)

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  • sys.stdout not reassigning to sys.__stdout__

    - by Vince
    I'm pretty new to Python so I am still just learning the language. One of the things I came across was reassigning sys.stdout to change the default output of print. So I wrote this as a test: import sys sys.stdout = open('log.txt','a') print('hey') sys.stdout.close() sys.stdout = sys.__stdout__ print('hi') Now the string 'hi' is not written to the file but it does not show in the default output either. When I assign some other variable to sys.stdout in the beginning and change it back it works, but I'm just wondering why its not changing back the first time.

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  • Actionscript 3 reflection class questions

    - by VPDD
    I found this reflection class: http://www.adobe.com/devnet/flash/articles/reflect_class_as3.html However, I have some questions about it. Let´s say I have a moviclip named “ref_mc”, to add a reflection I use: import com.pixelfumes.reflect.*; var r1:Reflect = new Reflect({mc:ref_mc, alpha:50, ratio:50, distance:0, updateTime:0, reflectionDropoff:1}); Now, the questions: 1) How do I update the parameters for the reflection r1 after it is created? 2) Is there a way to check whether the movieclip “ref_mc” already has a reflection? 3) Anyone has the .fla for the example with bars adjustments and code sample shown on the page (it is not on the download .zip)? Thanks in advance.

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  • Accessing Linq Values in ViewData

    - by Jemes
    I'm having trouble accessing the id, area and theme values in my ViewData. They are being set in my action filter but when I get to the Site.Master I don't have access to them. Any help or advice would be great. ActionFilter public override void OnActionExecuting(ActionExecutingContext filterContext) { int SectionID = Convert.ToInt32(filterContext.RouteData.Values["Section_ID"]); int CourseID = Convert.ToInt32(filterContext.RouteData.Values["Course_ID"]); if (CourseID == 0) { filterContext.Controller.ViewData["Styles"] = (from m in _dataContext.Styles where m.Area_ID == SectionID select new {theme = m.Area_FolderName }).ToList(); } else { filterContext.Controller.ViewData["Styles"] = (from m in _dataContext.Styles where m.Course_ID == CourseID select new { theme = m.Course_FolderName }).ToList(); } } } Site.Master <%@ Master Language="C#" Inherits="System.Web.Mvc.ViewMasterPage" % <%@ Import Namespace="Website.Models" % <% foreach (var c in (IEnumerable<Styles>)ViewData["Styles"]) { Response.Write(c.Theme); }%>

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  • Significant figures in the decimal module

    - by Jason Baker
    So I've decided to try to solve my physics homework by writing some python scripts to solve problems for me. One problem that I'm running into is that significant figures don't always seem to come out properly. For example this handles significant figures properly: from decimal import Decimal >>> Decimal('1.0') + Decimal('2.0') Decimal("3.0") But this doesn't: >>> Decimal('1.00') / Decimal('3.00') Decimal("0.3333333333333333333333333333") So two questions: Am I right that this isn't the expected amount of significant digits, or do I need to brush up on significant digit math? Is there any way to do this without having to set the decimal precision manually? Granted, I'm sure I can use numpy to do this, but I just want to know if there's a way to do this with the decimal module out of curiosity.

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  • How to transfer Netbeans Project into Eclipse?

    - by Yatendra Goel
    I have been using Netbeans for my java desktop application since few months. Now in the middle of the project, I want to switch over to Eclipse as the Netbeans once corrupted my GUI and I had to re-create several parts of the GUI and now it is displaying a compiler error as code too large private void initComponents() { 1 error "code too large" is a strange error. My code which it is saying too large is just 10,000 lines long. I came to know first time that we couldn't develop long code in Netbeans :) So instead of going into detail, I want to switch to Eclipse. I have never used it before. So could please tell me how to import my incompleted Netbeans project into eclipse.

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  • Safest way to copy a file

    - by aron
    Hello, I need to merg two PDF files. However sometimes a file might be locked up I wrote this code, but I'm wondering if it's not the smartest solution: private static int FILE_LOCKED_WAIT_PERIOD = 1000; while (true) { // If the file is in use, IOException will be thrown. // If file is not permitted to be opened because of Permission // Restrictions, UnauthorizedAccessException will be thrown. // For all other, Use normal Exception. try { inputDocument1 = PdfReader.Open(fileToMerge, PdfDocumentOpenMode.Import); break; } catch (IOException) { Thread.Sleep(FILE_LOCKED_WAIT_PERIOD); } catch (UnauthorizedAccessException) { Thread.Sleep(FILE_LOCKED_WAIT_PERIOD); } catch (Exception) { Thread.Sleep(FILE_LOCKED_WAIT_PERIOD); } }

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  • NSStream sockets missing data

    - by Chris T.
    I am trying to pull some sample data from FreeDB as a proof of concept, but I am having a tough time retrieving all of the data off the incoming stream (I am only getting the last bits for the final query listed here (if handshakeCode = 3) I think this may be something with the threading on the main runloop, but I am not sure. Odd thing is when the buffer size is larger than 1-2 bytes (which works as expected), I seem to be losing access to the data programmatically (the totalOutput variable on the first set of data is incomplete). I set up a packet capture, and it looks like those 1024 bytes are coming across the wire, but the app just isn't working with it. It looks like the next event is coming through and basically taking over. I tried using an NSLock to no avail as well. If I drop the buffer size down to 1 or 2, things seem to be reading just fine. This is probably obvious to someone who does this all the time, but this is my first foray into this with something I am familiar with, technology wise in other languages / platforms. The following code will show you what is happening. Run with the buffer set to 1024, and you will see a short final string, but once you set it to 1, you will see the amount of data I was expecting (I was even expecting it to be split, so that's not a big worry) #import <Foundation/Foundation.h> #import <Cocoa/Cocoa.h> //STACK OVERFLOW CODE: @interface stackoverflow : NSObject <NSStreamDelegate> { NSInputStream *iStream; NSOutputStream *oStream; int handshakeCode; NSString *selectedDiscId; NSString *selectedGenre; } -(void)getMatchesFromFreeDB; -(void)sendToOutputStream:(NSString*)command; @end @implementation stackoverflow -(void)getMatchesFromFreeDB { NSHost *host = [NSHost hostWithName:@"freedb.freedb.org"]; [NSStream getStreamsToHost:host port:8880 inputStream:&iStream outputStream:&oStream]; [iStream retain]; [oStream retain]; [iStream setDelegate:self]; [oStream setDelegate:self]; [iStream scheduleInRunLoop:[NSRunLoop currentRunLoop] forMode:NSDefaultRunLoopMode]; [oStream scheduleInRunLoop:[NSRunLoop currentRunLoop] forMode:NSDefaultRunLoopMode]; [iStream open]; [oStream open]; handshakeCode = 0; //not done any processing } -(void)stream:(NSStream *)aStream handleEvent:(NSStreamEvent)eventCode { switch(eventCode) { case NSStreamEventOpenCompleted: { NSLog(@"Stream open completed"); break; } case NSStreamEventHasBytesAvailable: { NSLog(@"Stream has bytes available"); if (aStream == iStream) { NSMutableString *totalOutput = [NSMutableString stringWithString:@""]; //read data uint8_t buffer[1024]; int len; while ([iStream hasBytesAvailable]) { len = [iStream read:buffer maxLength:sizeof(buffer)]; if (len 0) { NSString *output = [[NSString alloc] initWithBytes:buffer length:len encoding:NSUTF8StringEncoding]; //this could have also been put into an NSData object if (nil != output) { //append to the total output [totalOutput appendString:output]; } } } NSLog(@"OUTPUT , %i:\n\n%@", [totalOutput lengthOfBytesUsingEncoding:NSUTF8StringEncoding], totalOutput); NSArray *outputComponents = [totalOutput componentsSeparatedByString:@" "]; //Attempt to get handshake code, since we haven't done it yet: if (handshakeCode == 1) { //we are just getting the sign-on banner: //let's move on: handshakeCode = 2; } else if (handshakeCode == 2) { handshakeCode = [[outputComponents objectAtIndex:0] intValue]; if (handshakeCode == 200) { NSLog(@"---Handshake OK %i", handshakeCode); NSMutableString *query = [NSMutableString stringWithString:@"cddb query f3114b11 17 225 19915 36489 54850 69425 87025 103948 123242 136075 152817 178335 192850 211677 235104 262090 284882 308658 4430\n"]; handshakeCode = 3; [self sendToOutputStream:query]; } } else if (handshakeCode == 3) { //now, we are reading out the matches: if ([[outputComponents objectAtIndex:0] intValue] == 200) //found exact match: { NSLog(@"Found exact match"); selectedGenre = [outputComponents objectAtIndex:1] ; selectedDiscId = [outputComponents objectAtIndex:2]; if (selectedGenre && selectedDiscId) { //send off the request to get the entry: NSString *query = [NSString stringWithFormat:@"cddb read %@ %@\n", selectedGenre, selectedDiscId]; [self sendToOutputStream:query]; handshakeCode = 4; } } } } break; } case NSStreamEventEndEncountered: { NSLog(@"Stream event end encountered"); break; } case NSStreamEventErrorOccurred: { NSLog(@"Stream error occurred"); break; } case NSStreamEventHasSpaceAvailable: { NSLog(@"Stream has space available"); if (aStream == oStream) { if (handshakeCode == 0) { handshakeCode = 1; [self sendToOutputStream:@"cddb hello stackoverflow localhost.localdomain test .01BETA\n"]; } } break; } } } -(void)sendToOutputStream:(NSString*)command { const uint8_t *rawCommand = (const uint8_t *)[command UTF8String]; [oStream write:rawCommand maxLength:strlen(rawCommand)]; NSLog(@"Sent command: %@",command); } @end int main (int argc, const char * argv[]) { NSAutoreleasePool * pool = [[NSAutoreleasePool alloc] init]; stackoverflow *test = [[stackoverflow alloc] init]; [test getMatchesFromFreeDB]; NSRunLoop *runLoop = [NSRunLoop currentRunLoop]; [runLoop run]; [pool drain]; return 0; } Any help is much appreciated! Thanks

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  • I'm trying to build a to-do-list application in Objective C but coming up short.

    - by lampShade
    I'm getting this error: -[NSCFArray insertObject:atIndex:]: attempt to insert nil Here is the .m file: /* IBOutlet NSTextField *textField; IBOutlet NSTabView *tableView; IBOutlet NSButton *button; NSMutableArray *myArray; */ #import "AppController.h" @implementation AppController -(IBAction)addNewItem:(id)sender { myArray = [[NSMutableArray alloc]init]; tableView = [[NSTableView alloc] init]; [tableView setDataSource:self]; [textField stringValue]; NSString *string = [[NSString alloc] init]; string = [textField stringValue]; [myArray addObject:string]; NSLog(@"%d",[myArray count]); NSLog(@"%@",string); } - (int)numberOfRowsInTableView:(NSTableView *)aTableView { return [myArray count]; } - (id)tableView:(NSTableView *)aTableView objectValueForTableColumn:(NSTableColumn *)aTableColumn row:(int)rowIndex { //NSString *data = [myArray objectAtIndex:rowIndex]; return [myArray objectAtIndex:rowIndex]; } @end

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  • MEF Error message

    - by cmaduro
    Can anybody explain this error message: The composition remains unchanged. The changes were rejected because of the following error(s): The composition produced a single composition error. The root cause is provided below. Review the CompositionException.Errors property for more detailed information. 1) No valid exports were found that match the constraint '((exportDefinition.ContractName == "Silverbits.ApplicationServices.ApplicationServicesManager") AndAlso (exportDefinition.Metadata.ContainsKey("ExportTypeIdentity") AndAlso "Silverbits.ApplicationServices.ApplicationServicesManager".Equals(exportDefinition.Metadata.get_Item("ExportTypeIdentity"))))', invalid exports may have been rejected. Resulting in: Cannot set import 'Silverbits.Applications.SilverbitsApplication.ApplicationServices (ContractName="Silverbits.ApplicationServices.ApplicationServicesManager")' on part 'Manpower4U.App'. Element: Silverbits.Applications.SilverbitsApplication.ApplicationServices (ContractName="Silverbits.ApplicationServices.ApplicationServicesManager") -- Manpower4U.App

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  • Python: Why is IDLE so slow?

    - by Adam Matan
    Hi, IDLE is my favorite Python editor. It offers very nice and intuitive Python shell which is extremely useful for unit-testing and debugging, and a neat debugger. However, code executed under IDLE is insanely slow. By insanely I mean 3 orders of magnitude slow: bash time echo "for i in range(10000): print 'x'," | python Takes 0.052s, IDLE import datetime start=datetime.datetime.now() for i in range(10000): print 'x', end=datetime.datetime.now() print end-start Takes: >>> 0:01:44.853951 Which is roughly 2,000 times slower. Any thoughts, or ideas how to improve this? I guess it has something to do with the debugger in the background, but I'm not really sure. Adam

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  • BioPython: extracting sequence IDs from a Blast output file

    - by Jon
    Hi, I have a BLAST output file in XML format. It is 22 query sequences with 50 hits reported from each sequence. And I want to extract all the 50x22 hits. This is the code I currently have, but it only extracts the 50 hits from the first query. from Bio.Blast import NCBIXM blast_records = NCBIXML.parse(result_handle) blast_record = blast_records.next() save_file = open("/Users/jonbra/Desktop/my_fasta_seq.fasta", 'w') for alignment in blast_record.alignments: for hsp in alignment.hsps: save_file.write('>%s\n' % (alignment.title,)) save_file.close() Somebody have any suggestions as to extract all the hits? I guess I have to use something else than alignments. Hope this was clear. Thanks! Jon

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  • Connecting to Python XML RPC from the Mac

    - by MAC
    Hi, I wrote an XML RPC server in python and a simple Test Client for it in python. The Server runs on a linux box. I tested it by running the python client on the same linux machine and it works. I then tried to run the python client on a Mac and i get the following error socket.error: (61, 'Connection Refused') I can ping and ssh into the linux machine from the Mac. So i dont think its a configuration or firewall error. Does anyone have any idea what could be going wrong? The code for the client is as below: import xmlrpclib s = xmlrpclib.ServerProxy('http://143.252.249.141:8000') print s.GetUsers() print s.system.listMethods()

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  • Javascript Intellisense not working on Visual Studio 2010 Ultimate (Windows 7 x64)

    - by emzero
    Hi guys, I've just got the new Visual Studio 2010 Ultimate and Javascript Intellisense is not working on .aspx/.ascx files inside blocks. It does work on external .js files. After VS2010 setup, it asked me if I wanted to import the settings from previous VS version (I have VS2008 SP1 installed), I say yes. I've tried resetting the settings like explained here. Didn't work. I've also installed Resharper 5. I thought it might be conflicting, so I tried suspending it like it says here. Didn't work. Anyone experiencing the same issue? I really want javascript/jQuery intellisense =(

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  • Python SQLite: database is locked

    - by user322683
    I'm trying this code: import sqlite connection = sqlite.connect('cache.db') cur = connection.cursor() cur.execute('''create table item (id integer primary key, itemno text unique, scancode text, descr text, price real)''') connection.commit() cur.close() I'm catching this exception: Traceback (most recent call last): File "cache_storage.py", line 7, in <module> scancode text, descr text, price real)''') File "/usr/lib/python2.6/dist-packages/sqlite/main.py", line 237, in execute self.con._begin() File "/usr/lib/python2.6/dist-packages/sqlite/main.py", line 503, in _begin self.db.execute("BEGIN") _sqlite.OperationalError: database is locked Permissions for cache.db are ok. Any ideas?

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  • Encoding in python with lxml - complex solution

    - by Vojtech R.
    Hi, I need to download and parse webpage with lxml and build UTF-8 xml output. I thing schema in pseudocode is more illustrative: from lxml import etree webfile = urllib2.urlopen(url) root = etree.parse(webfile.read(), parser=etree.HTMLParser(recover=True)) txt = my_process_text(etree.tostring(root.xpath('/html/body'), encoding=utf8)) output = etree.Element("out") output.text = txt outputfile.write(etree.tostring(output, encoding=utf8)) So webfile can be in any encoding (lxml should handle this). Outputfile have to be in utf-8. I'm not sure where to use encoding/coding. Is this schema ok? (I cant find good tutorial about lxml and encoding, but I can find many problems with this...) I need robust approved solution so I ask you seniors. Many thanks

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  • Creating a web-service client directly from the source

    - by ben
    Hi, I am trying to generate the WS client jar directly from the @Webservice class(es). Let's take this example : package com.example.maven.jaxws.helloservice; import javax.jws.WebService; @WebService public class Hello { public String sayHello(String param) { ; return "Hello " + param; } } I can generate a war file and use glassfish to serve this webservice, and from there I can use the glassfish WSDL URL to generate the client sources. What I am trying to do is to skip the glassfish part. From my maven project defining the webservice, I would like to use the jaxws-maven-plugin to create the client classes but I cannot find any way to specify the actual URL of the webservice. It should be possible right? @see also http://stackoverflow.com/questions/2097789/creating-a-web-service-client-with-a-known-but-inaccessible-wsdl

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