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  • Updating an application OTA

    - by Bostjan
    I'm developing an application that will be available from a website (market probably as well). The problem I'm having at the moment is how to handle the updates to the app. I know how to check the version against the current one and I know if I need to update it. Question is...how? Is there a way I can download an APK from the website and start the install process? The user will have to confirm of course, but I just want to be able to start it for him. At the moment I'm doing this: private void doUpgrade() { // TODO Auto-generated method stub Builder builder = new AlertDialog.Builder(this); builder.setTitle(getString(R.string.upgrade)); builder.setIcon(R.drawable.help); builder.setMessage(getString(R.string.needUpgrade)); builder.setPositiveButton(getString(R.string.ok), new DialogInterface.OnClickListener() { @Override public void onClick(DialogInterface dialog, int which) { // TODO Auto-generated method stub Map<String, String> data = new HashMap<String, String>(); try { HttpResponse re = Registration.doPost("http://www.android-town.com/appRelease/AndroidTown.apk",data); int statusCode = re.getStatusLine().getStatusCode(); closeApp(); } catch (ClientProtocolException e) { e.printStackTrace(); Toast.makeText(getApplicationContext(), getString(R.string.noURLAccess), Toast.LENGTH_SHORT).show(); closeApp(); } catch (IOException e) { e.printStackTrace(); Toast.makeText(getApplicationContext(), getString(R.string.noURLAccess), Toast.LENGTH_SHORT).show(); closeApp(); } } }); builder.setNegativeButton(getString(R.string.cancel), new DialogInterface.OnClickListener() { @Override public void onClick(DialogInterface dialog, int which) { // TODO Auto-generated method stub dialog.cancel(); closeApp(); } }); builder.show(); } But it doesn't really do anything...should I open a webView with the URL? A new runnable thread? Any other way? Please help :) Cheers

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  • Using EhCache for session.createCriteria(...).list()

    - by James Smith
    I'm benchmarking the performance gains from using a 2nd level cache in Hibernate (enabling EhCache), but it doesn't seem to improve performance. In fact, the time to perform the query slightly increases. The query is: session.createCriteria(MyEntity.class).list(); The entity is: @Entity @Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE) public class MyEntity { @Id @GeneratedValue private long id; @Column(length=5000) private String data; //---SNIP getters and setters--- } My hibernate.cfg.xml is: <!-- all the normal stuff to get it to connect & map the entities plus:--> <property name="hibernate.cache.region.factory_class"> net.sf.ehcache.hibernate.EhCacheRegionFactory </property> The MyEntity table contains about 2000 rows. The problem is that before adding in the cache, the query above to list all entities took an average of 65 ms. After the cache, they take an average of 74 ms. Is there something I'm missing? Is there something extra that needs to be done that will increase performance?

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  • Injecting correct object graph using StructureMap in Queue of different Objects

    - by davy
    I have a queuing service that has to inject a different dependency graph depending on the type of object in the queue. I'm using Structure Map. So, if the object in the queue is TypeA the concrete classes for TypeA are used and if it's TypeB, the concrete classes for TypeB are used. I'd like to avoid code in the queue like: if (typeA) { // setup TypeA graph } else if (typeB) { // setup TypeB graph } Within the graph, I also have a generic classes such as an IReader(ISomething, ISpomethingElse) where IReader is generic but needs to inject the correct ISomething and ISomethingElse for the type. ISomething will also have dependencies and so on. Currently I create a TypeA or TypeB object and inject a generic Processor class using StructureMap into it and then pass a factory manually inject a TypeA or TypeB factory into a method like: Processor.Process(new TypeAFactory) // perhaps I should have an abstract factory... However, because the factory then creates the generic IReader mentioned above, I end up manually injecting all the TypeA or TypeB classes fro there on. I hope enough of this makes sense. I am new to StructureMap and was hoping somebody could point me in the right direction here for a flexible and elegant solution. Thanks

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  • Lazy loading is not working for one to many

    - by Shire
    Any 1-M that use the primary key of the parent table, but any 1-M that uses a different column does not work. It generates the SQL correctly, but put the value of the key into the SQL instead of the column value I want. Example mapping: public TemplateMap() { Table("IMPORT"); LazyLoad(); Id(x => x.ImportId).Column("IMPORT_ID").GeneratedBy.Assigned(); Map(x => x.ImportSetId).Column("IMPORTSET_ID"); HasMany(x => x.GoodChildren) .Access.CamelCaseField() .KeyColumns.Add("IMPORT_ID") .Cascade.Delete() .Inverse(); HasMany(x => x.BadChildren) .Access.CamelCaseField() .KeyColumns.Add("IMPORTSET_ID") .Cascade.Delete() .Inverse(); } Lazy loading works for GoodChildren, but not for BadChildren. The SQL statement is correct for both children. But the wrong values are use. If the value of IMPORT_ID is 10 and the value of IMPORTSET_ID is 12. The value 10 will be used for the IMPORTSET_ID in the SQL for BadChildren instead of 12. Anyone have any ideas what I need to change to get BadChildren to work correctly? Note: GoodChildren links to IMPORT_ID on Template BadChildren links to IMPORTSET_ID on Template

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  • How is external memory, internal memory, and cache organized?

    - by goldenmean
    Consider a system as follows:= A hardware board having say ARM Cortex-A8 and Neon Vector coprocessor, and Embedded Linux OS running on Cortex-A8. On this environment, if there is some application - say, a video decoder is executing - then: How is it decided that which buffers would be in external memory, which ones would be allocated in internal SRAM, etc. When one says calloc/malloc on such system/code, the pointer returned is from which memory: internal or external? Can a user make buffers to be allocated to the memories of his choice (internal/external)? In ARM architectures, there is another memory called as Tightly coupled memory (TCM). What is that and how can user enable and use it? Can I declare buffers in this memory? Do I need to see the memory map (if any) of the hardware board to understand about all these different physical memories present in a typical hardware board? How much of a role does the OS play in distinguishing these different memories? Sorry for multiple questions, but i think they all are interlinked.

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  • WCF data services (OData), query with inheritance limitation?

    - by Mathieu Hétu
    Project: WCF Data service using internally EF4 CTP5 Code-First approach. I configured entities with inheritance (TPH). See previous question on this topic: Previous question about multiple entities- same table The mapping works well, and unit test over EF4 confirms that queries runs smoothly. My entities looks like this: ContactBase (abstract) Customer (inherits from ContactBase), this entity has also several Navigation properties toward other entities Resource (inherits from ContactBase) I have configured a discriminator, so both Customer and Resource map to the same table. Again, everythings works fine on the Ef4 point of view (unit tests all greens!) However, when exposing this DBContext over WCF Data services, I get: - CustomerBases sets exposed (Customers and Resources sets seems hidden, is it by design?) - When I query over Odata on Customers, I get this error: Navigation Properties are not supported on derived entity types. Entity Set 'ContactBases' has a instance of type 'CodeFirstNamespace.Customer', which is an derived entity type and has navigation properties. Please remove all the navigation properties from type 'CodeFirstNamespace.Customer'. Stacktrace: at System.Data.Services.Serializers.SyndicationSerializer.WriteObjectProperties(IExpandedResult expanded, Object customObject, ResourceType resourceType, Uri absoluteUri, String relativeUri, SyndicationItem item, DictionaryContent content, EpmSourcePathSegment currentSourceRoot) at System.Data.Services.Serializers.SyndicationSerializer.WriteEntryElement(IExpandedResult expanded, Object element, ResourceType expectedType, Uri absoluteUri, String relativeUri, SyndicationItem target) at System.Data.Services.Serializers.SyndicationSerializer.<DeferredFeedItems>d__b.MoveNext() at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteItems(XmlWriter writer, IEnumerable`1 items, Uri feedBaseUri) at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteFeedTo(XmlWriter writer, SyndicationFeed feed, Boolean isSourceFeed) at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteFeed(XmlWriter writer) at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteTo(XmlWriter writer) at System.Data.Services.Serializers.SyndicationSerializer.WriteTopLevelElements(IExpandedResult expanded, IEnumerator elements, Boolean hasMoved) at System.Data.Services.Serializers.Serializer.WriteRequest(IEnumerator queryResults, Boolean hasMoved) at System.Data.Services.ResponseBodyWriter.Write(Stream stream) Seems like a limitation of WCF Data services... is it? Not much documentation can be found on the web about WCF Data services (OData) and inheritance specifications. How can I overpass this exception? I need these navigation properties on derived entities, and inheritance seems the only way to provide mapping of 2 entites on the same table with Ef4 CTP5... Any thoughts?

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  • What database strategy to choose for a large web application

    - by Snoopy
    I have to rewrite a large database application, running on 32 servers. The hardware is up to date, each machine has two quad core Xeon and 32 GByte RAM. The database is multi-tenant, each customer has his own file, around 5 to 10 GByte each. I run around 50 databases on this hardware. The app is open to the web, so I have no control on the load. There are no really complex queries, so SQL is not required if there is a better solution. The databases get updated via FTP every day at midnight. The database is read-only. C# is my favourite language and I want to use ASP.NET MVC. I thought about the following options: Use two big SQL servers running SQL Server 2012 to serve the 32 servers with data. On the 32 servers running IIS hosting providing REST services. Denormalize the database and use Redis on each webserver. Use booksleeve as a Redis client. Use a combination of SQL Server and Redis Use SQL Server 2012 together with Hadoop Use Hadoop without SQL Server What is the best way for a read-only database, to get the best performance without loosing maintainability? Does Map-Reduce make sense at all in such a scenario? The reason for the rewrite is, the old app written in C++ with ISAM technology is too slow, the interfaces are old fashioned and not nice to use from an website, especially when using ajax. The app uses a relational datamodel with many tables, but it is possible to write one accerlerator table where all queries can be performed on, and all other information from the other tables are possible by a simple key lookup.

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  • Creating Actions from UIActionSheets help

    - by user337174
    I am using two UIAction sheets within my current project. I can get one to work perfectly fine but when i insert a second action sheet it runs the same arguements as the first. How do i define the actionsheets seperatly? -(IBAction) phoneButtonClicked:(id)sender { // open a dialog with just an OK button UIActionSheet *actionSheet = [[UIActionSheet alloc] initWithTitle:nil delegate:self cancelButtonTitle:@"Cancel" destructiveButtonTitle:nil otherButtonTitles:[NSString stringWithFormat:@"Phone: %@",phone],nil]; actionSheet.actionSheetStyle = UIActionSheetStyleDefault; [actionSheet showInView:self.view]; // show from our table view (pops up in the middle of the table) [actionSheet release]; } -(IBAction) mapButtonClicked:(id)sender { // open a dialog with just an OK button UIActionSheet *mapActionSheet = [[UIActionSheet alloc] initWithTitle:nil delegate:self cancelButtonTitle:@"Cancel" destructiveButtonTitle:nil otherButtonTitles:[NSString stringWithFormat:@"Map"],nil]; mapActionSheet.actionSheetStyle = UIActionSheetStyleDefault; [mapActionSheet showInView:self.view]; // show from our table view (pops up in the middle of the table) [mapActionSheet release]; } -(void)actionSheet:(UIActionSheet *)actionSheet clickedButtonAtIndex:(NSInteger)buttonIndex { if(buttonIndex == 0){ NSString *callPhone = [NSString stringWithFormat:@"tel:%@",phone]; NSLog(@"Calling: %@", callPhone); [[UIApplication sharedApplication] openURL:[NSURL URLWithString:callPhone]]; } }

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  • Super inplace controls in_place_select displays incorrectly

    - by Magicked
    I'm using the super_inplace_controls plugin to allow users to edit fields on the "show" page. However, I'm running into an issue with the in_place_select function. Here is my view: <p> <b>Status:</b> <%= in_place_select :incident, :incident_status, :choices => @statuses.map { |e| [e.name, e.id] } %> </p> This is in the 'Incident' view. IncidentStatus is a separate table that has_many Incidents. In the Incident controller, I retrieve @statuses like so: @statuses = IncidentStatus.find(:all) Everything works fine for the in_place_select, except the original display. In my browser, it shows: Status: #<IncidentStatus:0x1033147d8> Which means it's not grabbing the current incident_status.name, but it's just changing the object to a string. I'm not sure how to fix this! When I click on the "IncidentStatus:0x1033147d8", everything works properly and I can select the proper fields. Thanks for any help!

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  • Worklight console app, update

    - by jarkko
    We're using Worklight 6.1.0.0 / WebSphere 8.0.0.2 (ND/aix). This seemed pretty close to my question too, but for version 6.0. I've successfully done uninstall/install to our worklight console war package. However, there is some extra work on re-deploying adapters and such. I was looking for a way to just update the console. Among the ant tasks there is a target 'minimal-update', which sounds like what I'm looking for (is it?). However when all other pieces fell into place, I have an error for mapping the datasources: ADMA0007E: A validation error occurred in task Mapping resource references to resources. The Java Naming and Directory Interface (JNDI) name is not specified for resource reference jdbc/WorklightDS in module Worklight with EJB name . Contents of the 'minimal-update' task is pretty much the same as for 'install'. I tried that as update from websphere admin console (but i should use the ant task - right?), that gave me a wizard screen to map jdbc/WorklightDS from package to jdbc/WorklightDS on server. This left me wondering how could I tell this using the ant task.

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  • Is it possible to embed a flash player in a table and retain the table properties

    - by user1494241
    I'd like to embed a music (flash) player in a table with clickable images but the embed code seems to throw the table properties off - it extends the width of the table. Is it possible to embed the player on the same row as the image whilst still retaining the table width? Here's what I've been using: <table width="620" border="0" cellspacing="0" cellpadding="0"> <tr> <td> <div align="left"><object height="18" width="100%"> <param name="movie" value="https://player.soundcloud.com/player.swf?url=http%3A%2F%2Fapi.soundcloud.com%2Fplaylists%2F1253725&amp;auto_play=false&amp;player_type=tiny&amp;font=Georgia&amp;color=9a6600&show_playcount=false&default_width=375&default_height=40&show_user=false"></param> <param name="allowscriptaccess" value="always"></param> <param name="wmode" value="transparent"></param><embed wmode="transparent" allowscriptaccess="always" height="18" src="https://player.soundcloud.com/player.swf?url=http%3A%2F%2Fapi.soundcloud.com%2Fplaylists%2F1253725&amp;auto_play=false&amp;player_type=tiny&amp;font=Georgia&amp;color=9a6600&show_playcount=false&default_width=375&default_height=40&show_user=false" type="application/x-shockwave-flash" width="100%"></embed> </object> </td> <td> <div align="right"><img src="http://dl.dropbox.com/u/31856944/Virb/splash_freedownload-2.png" border="0" width="245" height="42" usemap="#Map" /></div> </td> <tr> <td> <div align="right"><img src="http://dl.dropbox.com/u/31856944/Virb/splash_share-2.png" border="0" width="620" height="31" usemap="#Map2" /></div> </td> </tr> </table>

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  • Google MapView doesn't work after signed the app.

    - by user164589
    Hi guys, I am facing to android application signing problem. My application contains Google MapView. When I compile the app and run on the emulator, MapView works fine. But signed the app, MapView doesn't work. I've get Google Map API. This works on the simulator. I could sign the app once 2 months ago. Then I've upgraded the app. Now I need to sign the app again. Actually I don't know why signed app's mapView doesn't work. How to fix it ? Please advice. I used following steps when sign the app: Run Eclipse. Select the project. Right Click - Android Tools - Export Signed Application Package - Then Filled forms. (In forms, Validity years: 200, and all passwords are same.) Can you suggest me ? Thanks in advance.

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  • Creating a RESTful API - HELP!

    - by Martin Cox
    Hi Chaps Over the last few weeks I've been learning about iOS development, which has naturally led me into the world of APIs. Now, searching around on the Internet, I've come to the conclusion that using the REST architecture is very much recommended - due to it's supposed simplicity and ease of implementation. However, I'm really struggling with the implementation side of REST. I understand the concept; using HTTP methods as verbs to describe the action of a request and responding with suitable response codes, and so on. It's just, I don't understand how to code it. I don't get how I map a URI to an object. I understand that a GET request for domain.com/api/user/address?user_id=999 would return the address of user 999 - but I don't understand where or how that mapping from /user/address to some method that queries a database has taken place. Is this all coded in one php script? Would I just have a method that grabs the URI like so: $array = explode("/", ltrim(rtrim($_SERVER['REQUEST_URI'], "/"), "/")) And then cycle through that array, first I would have a request for a "user", so the PHP script would direct my request to the user object and then invoke the address method. Is that what actually happens? I've probably not explained my thought process very well there. The main thing I'm not getting is how that URI /user/address?id=999 somehow is broken down and executed - does it actually resolve to code? class user(id) { address() { //get user address } } I doubt I'm making sense now, so I'll call it a day trying to explain further. I hope someone out there can understand what I'm trying to say! Thanks Chaps, look forward to your responses. Martin p.s - I'm not a developer yet, I'm learning :)

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  • Mapping relationships from multiple databases in NHibernate

    - by mannish
    I have a multi-database application configured with NHibernate. The entities that correspond to tables from each database are in their own separate assemblies (an assembly per database if you will). I have a need/desire to relate an entity from one database to an entity of another database. Everything up to this point works as I want it to (the application handles multiple session factories, etc.). The relationship I want is many-to-one, but in reality my application only cares about one side of the relationship (for reasons that aren't relevant). The relevant entities are Project and PMProject, where a Project HAS A PMProject. When I map the many-to-one, I get the following error: NHibernate.MappingException: An association from the table PROJECTS refers to an unmapped class: SDMS.PPRM.PMProject The Project mapping itself reads (ignore the funky column naming; it's an Oracle db): <many-to-one name="PMProject" class="SDMS.PPRM.PMProject" column="PM_PROJECT_ID" cascade="none" /> In the class attribute, I'm referencing the appropriate assembly, but I get that error which seems to tell me it simply can't find the mapping file for PMProject. But that file exists (it's set as embedded resource), the session factory instantiation works without fail; so I'm at a loss on how to tell the Project mapping how/where to look for the appropriate mapping. Is there something I'm missing? A better way to go about this? Thanks in advance.

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  • Nested Resource testing RSpec

    - by Joseph DelCioppio
    I have two models: class Solution < ActiveRecord::Base belongs_to :owner, :class_name => "User", :foreign_key => :user_id end class User < ActiveRecord::Base has_many :solutions end with the following routing: map.resources :users, :has_many => :solutions and here is the SolutionsController: class SolutionsController < ApplicationController before_filter :load_user def index @solutions = @user.solutions end private def load_user @user = User.find(params[:user_id]) unless params[:user_id].nil? end end Can anybody help me with writing a test for the index action? So far I have tried the following but it doesn't work: describe SolutionsController do before(:each) do @user = Factory.create(:user) @solutions = 7.times{Factory.build(:solution, :owner => @user)} @user.stub!(:solutions).and_return(@solutions) end it "should find all of the solutions owned by a user" do @user.should_receive(:solutions) get :index, :user_id => @user.id end end And I get the following error: Spec::Mocks::MockExpectationError in 'SolutionsController GET index, when the user owns the software he is viewing should find all of the solutions owned by a user' #<User:0x000000041c53e0> expected :solutions with (any args) once, but received it 0 times Thanks in advance for all the help. Joe

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  • getting a "default" concrete class that implements an interface

    - by Roger Joys
    I am implementing a custom (and generic) Json.net serializer and hit a bump in the road that I could use some help on. When the deserializer is mapping to a property that is an interface, how can I best determine what sort of object to construct to deserialize to to place into the interface property. I have the following: [JsonConverter(typeof(MyCustomSerializer<foo>))] class foo { int Int1 { get; set; } IList<string> StringList {get; set; } } My serializer properly serializes this object, and but when it comes back in, and I try to map the json parts to to object, I have a JArray and an interface. I am currently instantiating anything enumerable like List as theList = Activator.CreateInstance(property.PropertyType); This works create to work with in the deserialization process, but when the property is IList, I get runtime complaints (obviously) about not being able to instantiate an interface. So how would I know what type of concrete class to create in a case like this? Thank you

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  • Problem with 2 levels of inheritance in hibernate mapping

    - by Seth
    Here's my class structure: class A class B extends A class C extends A class D extends C class E extends C And here are my mappings (class bodies omitted for brevity): Class A: @Entity @Inheritance(strategy=InheritanceType.SINGLE_TABLE) @MappedSuperclass @DiscriminatorColumn( name="className", discriminatorType=DiscriminatorType.STRING ) @ForceDiscriminator public abstract class A Class B: @Entity @DiscriminatorValue("B") public class B extends A Class C: @Entity @DiscriminatorValue("C") @MappedSuperclass @DiscriminatorColumn( name="cType", discriminatorType=DiscriminatorType.STRING ) @ForceDiscriminator public abstract class C extends A Class D: @Entity @DiscriminatorValue("D") public class D extends C Class E: @Entity @DiscriminatorValue("E") public class E extends C I've got a class F that contains a set of A: @Entity public class F { ... @OneToMany(fetch=FetchType.LAZY, cascade=CascadeType.ALL) @JoinTable( name="F_A", joinColumns = @JoinColumn(name="A_ID"), inverseJoinColumns = @JoinColumn(name="F_ID") ) private Set<A> aSet = new HashSet<A>(); ... The problem is that whenever I add a new E instance to aSet and then call session.saveOrUpdate(fInstance), hibernate saves with "A" as the discrimiator string. When I try to access the aSet in the F instance, I get the following exception (full stacktrace ommitted for brevity): org.hibernate.InstantiationException: Cannot instantiate abstract class or interface: path.to.class.A Am I mapping the classes incorrectly? How am I supposed to map multiple levels of inheritance? Thanks for the help!

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  • How do you use stl's functions like for_each?

    - by thomas-gies
    I started using stl containers because they came in very handy when I needed functionality of a list, set and map and had nothing else available in my programming environment. I did not care much about the ideas behind it. STL documentations were only interesting up to the point where it came to functions, etc. Then I skipped reading and just used the containers. But yesterday, still being relaxed from my holidays, I just gave it a try and wanted to go a bit more the stl way. So I used the transform function (can I have a little bit of applause for me, thank you). From an academic point of view it really looked interesting and it worked. But the thing that boroughs me is that if you intensify the use of those functions, you need 10ks of helper classes for mostly everything you want to do in your code. The hole logic of the program is sliced in tiny pieces. This slicing is not the result of god coding habits. It's just a technical need. Something, that makes my life probably harder not easier. And I learned the hard way, that you should always choose the simplest approach that solves the problem at hand. And I can't see what, for example, the for_each function is doing for me that justifies the use of a helper class over several simple lines of code that sit inside a normal loop so that everybody can see what is going on. I would like to know, what you are thinking about my concerns? Did you see it like I do when you started working this way and have changed your mind when you got used to it? Are there benefits that I overlooked? Or do you just ignore this stuff as I did (and will go an doing it, probably). Thanks. PS: I know that there is a real for_each loop in boost. But I ignore it here since it is just a convenient way for my usual loops with iterators I guess.

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  • What is the fastest way to find duplicates in multiple BIG txt files?

    - by user2950750
    I am really in deep water here and I need a lifeline. I have 10 txt files. Each file has up to 100.000.000 lines of data. Each line is simply a number representing something else. Numbers go up to 9 digits. I need to (somehow) scan these 10 files and find the numbers that appear in all 10 files. And here comes the tricky part. I have to do it in less than 2 seconds. I am not a developer, so I need an explanation for dummies. I have done enough research to learn that hash tables and map reduce might be something that I can make use of. But can it really be used to make it this fast, or do I need more advanced solutions? I have also been thinking about cutting up the files into smaller files. To that 1 file with 100.000.000 lines is transformed into 100 files with 1.000.000 lines. But I do not know what is best: 10 files with 100 million lines or 1000 files with 1 million lines? When I try to open the 100 million line file, it takes forever. So I think, maybe, it is just too big to be used. But I don't know if you can write code that will scan it without opening. Speed is the most important factor in this, and I need to know if it can be done as fast as I need it, or if I have to store my data in another way, for example, in a database like mysql or something. Thank you in advance to anybody that can give some good feedback.

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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  • How to systematically generate images from data?

    - by adamvickers
    I work for a performing arts nonprofit. We have seating charts for each of the theaters we work with; each seating chart shows the number of sections, the shape of each section, and the number of rows in each section. We'd like to create dynamic seating charts based on this info. We'd like them to look/feel kinda like this: http://www.fansnap.com/tickets/177754-on. But the tricky part is we'd like to be able to store all the info about each theater (the section names, shape/size of each section, and number of rows in each section) as data and then build a system that reads this data and uses it to create a dynamic map. I'm a life-long web developer, but I don't have have any experience with a difficult graphics problem like this. I realize it's a complex problem and I don't expect anyone to give me a complete answer here, but I would love direction on where I should be looking for more info. Is what I'm describing possible? Does this sort of technique have a name? Where can I learn more about how to accomplish this? What software should I use? Any info would be helpful.

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  • How to determine a text block of a file in one version come from which file in the previous version?

    - by Muhammad Asaduzzaman
    The problem is described below: Suppose I have a list of files in one version(say A,B,C,D). In the next version I have the following files(A,E,F,G). There are some similarities in their contents. The files in the later version comes from the previous version by file name renaming, content addition, deletion or partial modification or without any change( for example A is not changed). I take a block of text from a file(E, 2nd version) and check which files(in the 1st version) contain this text block. I found that B,C and D contain the text fragment. I want to determine from which file(B or c or d) this text block actually comes from.(I assume that E is a file whose name change in the second version). Since the contents may be changed, added or deleted in the later version, so in order to determine similarity I use LCS algorithm. But I cannot map the file with its previous version. I think one possible approach might be to use the location information of the match text blocks. But this heuristics not always work. Is there any research or algorithm exist to find so. Any direction will be helpful. Thanks in advance.

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  • problem with two key ranges in couchdb

    - by Duasto
    I'm having problem getting the right results in my coordinate system. To explain my system, I have this simple database that have x_axis, y_axis and name columns. I don't need to get all the data, I just need to display some part of it. For example, I have a coordinate system that have 10:10(meaning from x_axis -10 to 10 and from y_axis -10 to 10) and I want to display only 49 coordinates. In sql query I can do it something like this: "select * from coordinate where x_axis = -3 and x_axis <= 3 and y_axis = -3 y_axis <= 3" I tried this function but no success: "by_range": { "map": "function(doc) { emit([doc.x_axis, doc.y_axis], doc) }" } by_range?startkey=[-3,-3]&endkey=[3,3] I got a wrong results of: -3x-3 -3x-2 -3x-1 -3x0 -3x1 -3x2 -3x3 <-- should not display this part -- -3x4 -3x5 -3x6 -3x7 -3x8 -3x9 -3x10 <-- end of should not display this part -- ..... up to 3x3 to give you a better understanding of my project here is the screenshot of that I want to be made: Oops they don't allowed new poster to post an image img96(dot)imageshack(dot)us/img96/5382/coordinates(dot)jpg <<< just change the "(dot)" to "."

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  • Best way to migrate export/import from SQL Server to oracle

    - by matao
    Hi guys! I'm faced with needing access for reporting to some data that lives in Oracle and other data that lives in a SQL Server 2000 database. For various reasons these live on different sides of a firewall. Now we're looking at doing an export/import from sql server to oracle and I'd like some advice on the best way to go about it... The procedure will need to be fully automated and run nightly, so that excludes using the SQL developer tools. I also can't make a live link between databases from our (oracle) side as the firewall is in the way. The data needs to be transformed in the process from a star schema to a de-normalised table ready for reporting. What I'm thinking about is writing a monster query for SQL Server (which I mostly have already) that will denormalise and read out the data from SQL Server into a flat file using the sql server equivalent of sqlplus as a scheduled task, dump into a Well Known Location, then on the oracle side have a cron job that copies down the file and loads it with sql loader and rebuilds indexes etc. This is all doable, but very manual. Is there one or a combination of FOSS or standard oracle/SQL Server tools that could automate this for me? the Irreducible complexity is the query on one side and building indexes on the other, but I would love to not have to write the CSV dumping detail or the SQL loader script, just say dump this view out to CSV on one side, and on the other truncate and insert into this table from CSV and not worry about mapping column names and all other arcane sqlldr voodoo... best practices? thoughts? comments? edit: I have about 50+ columns all of varying types and lengths in my dataset, which is why I'd prefer to not have to write out how to generate and map each single column...

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  • CompositionHost.Initialize() can not execute twice.

    - by Khoa
    I am currently try to integrate MEF and PRISM to work with each other. Everything is working fine so far. Now i would like to use MEF runtime module discovery (DeploymentCatalog) which will be used to download XAPs from server directory and then plug it into one of the Region inside my MAIN UI. I am using UnityBootStrapper and inside this class i also integrated MEF container. This sample application is based on Glenn Block (http://codebetter.com/glennblock/2010/01/03/mef-and-prism-exploration-mef-module-loading/). The following code is used to initialize CompositionContainer inside my Bootstrapper: // This is the host catalog which contains all parts of running assembly. var catalog = GetHostCatalog(); // Create MEF container which initial catalog var container = new CompositionContainer(catalog); // here we explicitly map a part to make it available on imports elsewhere, using // Unity to resolve the export so dependencies are resolved // We do this because region manager is third-party ... therefore, we need to // export explicitly because the implementation doesn't have its own [export] tag container.ComposeExportedValue<IRegionManager>(Container.Resolve<IRegionManager>()); container.ComposeExportedValue<IEventAggregator>(Container.Resolve<IEventAggregator>()); // Obtain CatalogService as a singleton // All dynamic modules will use this service to add its parts. Container.RegisterInstance<ICatalogService>(new CatalogService(catalog)); // Initialize the container CompositionHost.Initialize(container); Now i have another class called DeploymentCatalogService which is used to download the XAP from server. The current problem i am facing is that inside DeploymentCatalogService Initialize method, CompositionHost container is try to initialize its container with aggregateCatalog again. _aggregateCatalog = new AggregateCatalog(); _aggregateCatalog.Catalogs.Add(new DeploymentCatalog()); CompositionHost.Initialize(_aggregateCatalog); This causes an Exception which stated that The container has already been initialized. Is there a way to use the existing container and update it with the new aggregateCatalog? Hope this is not too confusing. Please be nice i am still new to MEF. Cheers,

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