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  • How to center an R plot

    - by ConnorG
    I'm working on visualizing a matrix in R (almost exactly like http://reference.wolfram.com/mathematica/ref/MatrixPlot.html), and I've been using image(<matrix>,axes=FALSE) to draw the picture. However, I noticed that with the y-axis turned off, the plot isn't centered--the space is still there for the axis ticks + label. I can finagle some centering with par(oma=c(0,0,0,2.5)) but this seems inefficient and error-prone (if my matrix were to change dimensions/become non-square). Is there a better way to force the graphic to center? The right hand margin is significantly smaller than the left.

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  • Plot smooth line with PyPlot

    - by Paul
    I've got the following simple script that plots a graph: import matplotlib.pyplot as plt import numpy as np T = np.array([6, 7, 8, 9, 10, 11, 12]) power = np.array([1.53E+03, 5.92E+02, 2.04E+02, 7.24E+01, 2.72E+01, 1.10E+01, 4.70E+00]) plt.plot(T,power) plt.show() As it is now, the line goes straight from point to point which looks ok, but could be better in my opinion. What I want is to smooth the line between the points. In Gnuplot I would have plotted with smooth cplines. Is there an easy way to do this in PyPlot? I've found some tutorials, but they all seem rather complex.

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  • Changing text size on a ggplot bump plot

    - by Tom Liptrot
    Hi, I'm fairly new to ggplot. I have made a bumpplot using code posted below. I got the code from someones blog - i've lost the link.... I want to be able to increase the size of the lables (here letters which care very small on the left and right of the plot) without affecting the width of the lines (this will only really make sense after you have run the code) I have tried changing the size paramater but that always alter the line width as well. Any suggestion appreciated. Tom require(ggplot2) df<-matrix(rnorm(520), 5, 10) #makes a random example colnames(df) <- letters[1:10] Price.Rank<-t(apply(df, 1, rank)) dfm<-melt(Price.Rank) names(dfm)<-c( "Date","Brand", "value") p <- ggplot(dfm, aes(factor(Date), value, group = Brand, colour = Brand, label = Brand)) p1 <- p + geom_line(aes(size=2.2, alpha=0.7)) + geom_text(data = subset(dfm, Date == 1), aes(x = Date , size =2.2, hjust = 1, vjust=0)) + geom_text(data = subset(dfm, Date == 5), aes(x = Date , size =2.2, hjust = 0, vjust=0))+ theme_bw() + opts(legend.position = "none", panel.border = theme_blank()) p1 + theme_bw() + opts(legend.position = "none", panel.border = theme_blank())

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  • Python: Plot some data (matplotlib) without GIL

    - by BandGap
    Hello all, my problem is the GIL of course. While I'm analysing data it would be nice to present some plots in between (so it's not too boring waiting for results) But the GIL prevents this (and this is bringing me to the point of asking myself if Python was such a good idea in the first place). I can only display the plot, wait till the user closes it and commence calculations after that. A waste of time obviously. I already tried the subprocess and multiprocessing modules but can't seem to get them to work. Any thoughts on this one? Thanks

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  • How to center an R plot after removing axis labels

    - by ConnorG
    I'm working on visualizing a matrix in R (almost exactly like http://reference.wolfram.com/mathematica/ref/MatrixPlot.html), and I've been using image(<matrix>,axes=FALSE) to draw the picture. However, I noticed that with the y-axis turned off, the plot isn't centered--the space is still there for the axis ticks + label. I can finagle some centering with par(oma=c(0,0,0,2.5)) but this seems inefficient and error-prone (if my matrix were to change dimensions/become non-square). Is there a better way to force the graphic to center? The right hand margin is significantly smaller than the left.

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  • simple plot algorithm with autoscale

    - by adrin
    I need to implement a simple plotting component in C#(WPF to be more precise). What i have is a collection of data samples containing time (X axis) and a value (both double types). I have a drawing canvas of a fixed size (Width x Height) and a DrawLine method/function that can draw on it. The problem I am facing now is how do I draw the plot so that it is autoscaled? In other words how do I map the samples I have to actual pixels on my Width x Height canvas?

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  • google maps plot route between two points

    - by amarsh-anand
    I have written this innocent javascript code, which lets the user create two markers and plot the route between them. It doesnt work, instead, it gives a weird error: Uncaught TypeError: Cannot read property 'ya' of undefined Can someone suggest me whats wrong here: // called upon a click GEvent.addListener(map, "click", function(overlay,point) { if (isCreateHeadPoint) { // add the head marker headMarker = new GMarker(point,{icon:redIcon,title:'Head'}); map.addOverlay(headMarker); isCreateHeadPoint = false; } else { // add the tail marker tailMarker = new GMarker(point,{icon:greenIcon,title:'Tail'}); map.addOverlay(tailMarker); isCreateHeadPoint = true; // create a path from head to tail direction.load("from:" + headMarker.getPoint().lat()+ ", " + headMarker.getPoint().lng()+ " to:" + tailMarker.getPoint().lat() + "," + tailMarker.getPoint().lng(), { getPolyline: true, getSteps: true }); // display the path map.addOverlay(direction.getPolyline()); } });

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  • Howto Plot "Reverse" Cumulative Frequency Graph With ECDF

    - by neversaint
    I have no problem plotting the following cumulative frequency graph plot like this. library(Hmisc) pre.test <- rnorm(100,50,10) post.test <- rnorm(100,55,10) x <- c(pre.test, post.test) g <- c(rep('Pre',length(pre.test)),rep('Post',length(post.test))) Ecdf(x, group=g, what="f", xlab='Test Results', label.curves=list(keys=1:2)) But I want to show the graph in forms of the "reverse" cumulative frequency of values x ? (i.e. something equivalent to what="1-f"). Is there a way to do it? Other suggestions in R other than using Hmisc are also very much welcomed.

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  • Core Data: Fetch all entities in a to-many-relationship of a particular object?

    - by Björn Marschollek
    Hi there, in my iPhone application I am using simple Core Data Model with two entities (Item and Property): Item name properties Property name value item Item has one attribute (name) and one one-to-many-relationship (properties). Its inverse relationship is item. Property has two attributes the according inverse relationship. Now I want to show my data in table views on two levels. The first one lists all items; when one row is selected, a new UITableViewController is pushed onto my UINavigationController's stack. The new UITableView is supposed to show all properties (i.e. their names) of the selected item. To achieve this, I use a NSFetchedResultsController stored in an instance variable. On the first level, everything works fine when setting up the NSFetchedResultsController like this: -(NSFetchedResultsController *) fetchedResultsController { if (fetchedResultsController) return fetchedResultsController; // goal: tell the FRC to fetch all item objects. NSFetchRequest *fetch = [[NSFetchRequest alloc] init]; NSEntityDescription *entity = [NSEntityDescription entityForName:@"Item" inManagedObjectContext:self.moContext]; [fetch setEntity:entity]; NSSortDescriptor *sort = [[NSSortDescriptor alloc] initWithKey:@"name" ascending:YES]; [fetch setSortDescriptors:[NSArray arrayWithObject:sort]]; [fetch setFetchBatchSize:10]; NSFetchedResultsController *frController = [[NSFetchedResultsController alloc] initWithFetchRequest:fetch managedObjectContext:self.moContext sectionNameKeyPath:nil cacheName:@"cache"]; self.fetchedResultsController = frController; fetchedResultsController.delegate = self; [sort release]; [frController release]; [fetch release]; return fetchedResultsController; } However, on the second-level UITableView, I seem to do something wrong. I implemented the fetchedresultsController in a similar way: -(NSFetchedResultsController *) fetchedResultsController { if (fetchedResultsController) return fetchedResultsController; // goal: tell the FRC to fetch all property objects that belong to the previously selected item NSFetchRequest *fetch = [[NSFetchRequest alloc] init]; // fetch all Property entities. NSEntityDescription *entity = [NSEntityDescription entityForName:@"Property" inManagedObjectContext:self.moContext]; [fetch setEntity:entity]; // limit to those entities that belong to the particular item NSPredicate *predicate = [NSPredicate predicateWithFormat:[NSString stringWithFormat:@"item.name like '%@'",self.item.name]]; [fetch setPredicate:predicate]; // sort it. Boring. NSSortDescriptor *sort = [[NSSortDescriptor alloc] initWithKey:@"name" ascending:YES]; [fetch setSortDescriptors:[NSArray arrayWithObject:sort]]; NSError *error = nil; NSLog(@"%d entities found.",[self.moContext countForFetchRequest:fetch error:&error]); // logs "3 entities found."; I added those properties before. See below for my saving "problem". if (error) NSLog("%@",error); // no error, thus nothing logged. [fetch setFetchBatchSize:20]; NSFetchedResultsController *frController = [[NSFetchedResultsController alloc] initWithFetchRequest:fetch managedObjectContext:self.moContext sectionNameKeyPath:nil cacheName:@"cache"]; self.fetchedResultsController = frController; fetchedResultsController.delegate = self; [sort release]; [frController release]; [fetch release]; return fetchedResultsController; } Now it's getting weird. The above NSLog statement returns me the correct number of properties for the selected item. However, the UITableViewDelegate method tells me that there are no properties: -(NSInteger) tableView:(UITableView *)table numberOfRowsInSection:(NSInteger)section { id <NSFetchedResultsSectionInfo> sectionInfo = [[self.fetchedResultsController sections] objectAtIndex:section]; NSLog(@"Found %d properties for item \"%@\". Should have found %d.",[sectionInfo numberOfObjects], self.item.name, [self.item.properties count]); // logs "Found 0 properties for item "item". Should have found 3." return [sectionInfo numberOfObjects]; } The same implementation works fine on the first level. It's getting even weirder. I implemented some kind of UI to add properties. I create a new Property instance via Property *p = [NSEntityDescription insertNewObjectForEntityForName:@"Property" inManagedObjectContext:self.moContext];, set up the relationships and call [self.moContext save:&error]. This seems to work, as error is still nil and the object gets saved (I can see the number of properties when logging the Item instance, see above). However, the delegate methods are not fired. This seems to me due to the possibly messed up fetchRequest(Controller). Any ideas? Did I mess up the second fetch request? Is this the right way to fetch all entities in a to-many-relationship for a particular instance at all?

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  • Changing font size of legend title in Python pylab rose/polar plot

    - by LaurieW
    I'm trying to change the font size of the title of an existing legend on a rose, or 'polar', plot. Most of the code was written by somebody else, who is away. I've added:- ax.legend(title=legend_title) setp(l.get_title(), fontsize=8) to add the title 'legend_title', which is a variable that the user enters a string for in a a different function that uses this code. The second line of this doesn't return an error but doesn't appear to do anything either. The complete code is below. 'Rose' and 'RoseAxes' are modules/functions written by somebody. Does anyone know of a way to change the legend title font size? I've found some examples for normal plots but can't find any for rose/polar plots. from Rose.RoseAxes import RoseAxes from pylab import figure, title, setp, close, clf from PlotGeneration import color_map_xml fig = figure(1) rect = [0.02, 0.1, 0.8, 0.8] ax = RoseAxes(fig, rect, axisbg='w') fig.add_axes(ax) if cmap == None: (XMLcmap,colors) = color_map_xml.get_cmap('D:/HRW/VET/HrwPyLibs/ColorMapLibrary/paired.xml',255) else: XMLcmap = cmap bqs = kwargs.pop('CTfigname', None) ax.box(Dir, U, bins = rose_binX, units = unit, nsector = nsector, cmap = XMLcmap, lw = 0, **kwargs ) l = ax.legend() ax.legend(title=legend_title) setp(l.get_texts(), fontsize=8) setp(l.get_title(), fontsize=8) Thanks for any help

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  • Model Fit of Binary GLM with more than 1 or 2 predictors

    - by Salmo salar
    I am trying to predict a binary GLM with multiple predictors. I can do it fine with one predictor variable however struggle when I use multiple Sample data: structure(list(attempt = structure(c(1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L), .Label = c("1", "2"), class = "factor"), searchtime = c(137, 90, 164, 32, 39, 30, 197, 308, 172, 48, 867, 117, 63, 1345, 38, 122, 226, 397, 0, 106, 259, 220, 170, 102, 46, 327, 8, 10, 23, 108, 315, 318, 70, 646, 69, 97, 117, 45, 31, 64, 125, 17, 240, 63, 549, 1651, 233, 406, 334, 168, 127, 47, 881), mean.search.flow = c(15.97766667, 14.226, 17.15724762, 14.7465, 39.579, 23.355, 110.2926923, 71.95709524, 72.73666667, 32.37466667, 50.34905172, 27.98471429, 49.244, 109.1759778, 77.71733333, 37.446875, 101.23875, 67.78534615, 21.359, 36.54257143, 34.13961111, 64.35253333, 80.98554545, 61.50857143, 48.983, 63.81072727, 26.105, 46.783, 23.0605, 33.61557143, 46.31042857, 62.37061905, 12.565, 42.31983721, 15.3982, 14.49625, 23.77425, 25.626, 74.62485714, 170.1547778, 50.67125, 48.098, 66.83644444, 76.564875, 80.63189189, 136.0573243, 136.3484, 86.68688889, 34.82169565, 70.00415385, 64.67233333, 81.72766667, 57.74522034), Pass = structure(c(1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L), .Label = c("0", "1"), class = "factor")), .Names = c("attempt", "searchtime", "mean.search.flow", "Pass"), class = "data.frame", row.names = c(1L, 2L, 3L, 4L, 5L, 6L, 7L, 8L, 12L, 13L, 14L, 15L, 16L, 17L, 18L, 19L, 20L, 21L, 22L, 23L, 24L, 25L, 26L, 28L, 29L, 30L, 31L, 32L, 33L, 34L, 35L, 36L, 37L, 38L, 39L, 40L, 50L, 51L, 53L, 54L, 60L, 61L, 62L, 63L, 64L, 65L, 66L, 67L, 68L, 69L, 70L, 71L, 72L)) First model with single predictor M2 <- glm(Pass ~ searchtime, data = DF3, family = binomial) summary(M2) drop1(M2, test = "Chi") Plot works fine P1 <- predict(M2, newdata = MyData, type = "link", se = TRUE) plot(x=MyData$searchtime, exp(P1$fit) / (1+exp(P1$fit)), type = "l", ylim = c(0,1), xlab = "search time", ylab = "pobability of passage") lines(MyData$searchtime, exp(P1$fit+1.96*P1$se.fit)/ (1 + exp(P1$fit + 1.96 * P1$se.fit)), lty = 2) lines(MyData$searchtime, exp(P1$fit-1.96*P1$se.fit)/ (1 + exp(P1$fit - 1.96 * P1$se.fit)), lty = 2) points(DF3$searchtime, DF3$Search.and.pass) Second model M2a <- glm(Pass ~ searchtime + mean.search.flow+ attempt, data = DF3, family = binomial) summary(M2a) drop1(M2a, test = "Chi") How do I plot this with "dummy" data? I have tried along the lines of Model.matrix and expand.grid, as you would do with glmer, but fail straight away due to the two categorical variables along with factor(attempt)

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  • R: ggplot2, how to get the parameters from a plotted linear model smoother?

    - by John
    I have a data.frame with 3 time series in it, shown below. When I plot them with a smoother time series, I want to be able to get the parameters of the linear model that I plot, but I can't see how to do that? > data day od series_id 1 1 0.10 A1 2 3 1.00 A1 3 5 0.50 A1 4 7 0.70 A1 5 1 1.70 B1 6 3 1.60 B1 7 5 1.75 B1 8 7 1.70 B1 9 1 2.10 C1 10 3 2.30 C1 11 5 2.50 C1 12 7 2.70 C1 data = data.frame (day = c(1,3,5,7,1,3,5,7,1,3,5,7), od = c(0.1,1.0,0.5,0.7 ,1.7,1.6,1.75,1.7 ,2.1,2.3,2.5,2.7), series_id = c("A1", "A1", "A1","A1", "B1", "B1","B1", "B1", "C1","C1", "C1", "C1")) r <- ggplot(data = data, aes(x = day, y = od)) r + stat_smooth(aes(group = series_id, color = series_id),method="lm")

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  • set width of bars in matlab bar plot on logarithmic scale

    - by KatyB
    I am a bit confused on how to draw a bar graph for the following example: x_lims = [1000,10000;10000,100000;100000,1000000;1000000,10000000;10000000,... 100000000;100000000,1000000000;1000000000,10000000000;... 10000000000,100000000000;100000000000,1e12]; ex1 = [277422033.049038;24118536.4203188;2096819.03295482;... 182293.402068030;15905;1330;105;16;1]; Here, x_lims is the x axis limits for each individual bar and ex1 is the count. How can I plot these on a bar graph so that the width of each individual bar along the x axis is defined by the distance between x_lims(:,1) and x_lims(:,2) and the y value is defined by ex1? So far I have: bar(log10(x_lims(:,1)),log10(ex1)); set(gca,'Xtick',3:11,'YTick',0:9); set(gca,'Xticklabel',10.^get(gca,'Xtick'),... 'Yticklabel',10.^get(gca,'Ytick')); But I would like to (1) have the labels to be the same as if they were created using semilogx or semilogy e.g. 10^9, and (2) I would like to remove the space between the bars, for the first bar, for example, I would like to have it extend horizontally from 1000 to 10000 and then the second bar from 10000 to 100000, and so on. How can this be done?

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  • Instantaneous frequency not plotting correctly in Matlab

    - by user2951069
    I'm trying to convert square wave data to instantaneous frequency and plot against time. It works correctly for one data set, but three others are plotting as shown in the image: http://i.imgur.com/iuL648o.png Time is linear, so it shouldn't be plotting like that. Anyone have any ideas as to what's going on? I'm using the following code: ddiff = diff(flow(:,1)); locations = find(ddiff(1:end-1,1)>0.1 & ddiff(2:end,1) <=0.1); for z = 2:length(locations) inst_freq(z-1) = 1/(time(locations(z))-time(locations(z-1))); freq_time(z-1) = time(locations(z)); end plot(freq_time,inst_freq)

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  • Why the valid looking statement gives error in MATLAB?

    - by user198729
    It's from this question? Why the two solutions doesn't work, though it looks very valid for me: >> t = -pi:0.1:pi; >> r = ((sin(t)*sqrt(cos(t)))*(sin(t) + (7/5))^(-1)) - 2*sin(t) + 2 ; ??? Error using ==> mtimes Inner matrix dimensions must agree. >> t = -pi:0.1:pi; >> r = ((sin(t).*sqrt(cos(t))).*(sin(t) + (7/5)).^(-1)) - 2*sin(t) + 2 ; >> plot(r,t) ??? Error using ==> plot Vectors must be the same lengths. What's wrong with the above?

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  • plot 4 different plots inside 1 pdf

    - by ifreak
    I have 2 data frames which i want to generate 3 plots from them and place them inside 1 pdf file as a single column. i want all the plots to have the same x-axis limits(basically the same x-axis) even thought they differ in the name and how they were obtained. the dataframes looks something like that: d1 X Y Z 0.04939317 -0.4622222 13651 0.03202451 -0.4261000 13401 0.09950793 -0.3233025 13151 0.11548556 -0.4637981 12486 0.09817597 -0.4751886 12236 0.15770701 -0.5819355 11986 and d2 V0 V1 V2 V3 sign 1 1 0.379 0.612 pos 2 1 0.378 0.620 pos 3 1 0.578 0.571 neg 4 1 0.978 0.561 pos 5 1 0.758 0.261 neg 6 1 0.378 0.126 neg P.S : both data frames are bigger than this, this is only a part of them V0, V1 and Z range from 1 to 20000 the plots that i created are : From d2 d2plot=ggplot(d1, aes(V0,V1, fill=sign)) + geom_tile()+ scale_fill_manual(values = c("neg" = "yellow", "pos"="red")) +geom_vline(xintercept =10000 ) +geom_text(mapping=aes(x=10000,y=0, label="Stop"), size=4, angle=90, vjust=-0.4, hjust=0) From d1 d1plot = ggplot(d2) + geom_errorbarh(aes(x=z,xmin=z-50,xmax=z+50, y=Y, height = 0.02),color="red")+ opts(legend.position = "none") +geom_vline(xintercept = 10000) +geom_text(mapping=aes(x=10000,y=-0.3, label="Stop"), size=4, angle=90, vjust=-0.4, hjust=0) i've tried grid.arrange(d1plot,d2plot,ncol=1) but the x-axis is different for each plot, i tried changing the aspect ratio, but this will change the y-axis ..i've also tried to use facet_wrap but the problem that my x-axis values have different values, i just want the limits and breaks to be the same and the plots all be aligned in 1 column based on 1 x-axis to comapre the value of the statistical methods in an easy way.

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  • plot an item map (based on difficulties)

    - by Tyler Rinker
    I have a data set of item difficulties that correspond to items on a questionnaire that looks like this: item difficulty 1 ITEM_6: I DESTROY THINGS BELONGING TO OTHERS 2.31179818 2 ITEM_11: I PHYSICALLY ATTACK PEOPLE 1.95215238 3 ITEM_5: I DESTROY MY OWN THINGS 1.93479536 4 ITEM_10: I GET IN MANY FIGHTS 1.62610855 5 ITEM_19: I THREATEN TO HURT PEOPLE 1.62188759 6 ITEM_12: I SCREAM A LOT 1.45137544 7 ITEM_8: I DISOBEY AT SCHOOL 0.94255210 8 ITEM_3: I AM MEAN TO OTHERS 0.89941812 9 ITEM_20: I AM LOUDER THAN OTHER KIDS 0.72752197 10 ITEM_17: I TEASE OTHERS A LOT 0.61792597 11 ITEM_9: I AM JEALOUS OF OTHERS 0.61288399 12 ITEM_4: I TRY TO GET A LOT OF ATTENTION 0.39947791 13 ITEM_18: I HAVE A HOT TEMPER 0.32209970 14 ITEM_13: I SHOW OFF OR CLOWN 0.31707701 15 ITEM_7: I DISOBEY MY PARENTS 0.20902108 16 ITEM_2: I BRAG 0.19923607 17 ITEM_15: MY MOODS OR FEELINGS CHANGE SUDDENLY 0.06023317 18 ITEM_14: I AM STUBBORN -0.31155481 19 ITEM_16: I TALK TOO MUCH -0.67777282 20 ITEM_1: I ARGUE A LOT -1.15013758 I want to make an item map of these items that looks similar (not exactly) to this (I created this in word but it lacks true scaling as I just eyeballed the scale). It's not really a traditional statistical graphic and so I don't really know how to approach this. I don't care what graphics system this is done in but I am more familiar with ggplot2 and base. I would greatly appreciate a method of plotting this sort of unusual plot. Here's the data set (I'm including it as I was having difficulty using read.table on the dataframe above): DF <- structure(list(item = structure(c(17L, 3L, 16L, 2L, 11L, 4L, 19L, 14L, 13L, 9L, 20L, 15L, 10L, 5L, 18L, 12L, 7L, 6L, 8L, 1L ), .Label = c("ITEM_1: I ARGUE A LOT", "ITEM_10: I GET IN MANY FIGHTS", "ITEM_11: I PHYSICALLY ATTACK PEOPLE", "ITEM_12: I SCREAM A LOT", "ITEM_13: I SHOW OFF OR CLOWN", "ITEM_14: I AM STUBBORN", "ITEM_15: MY MOODS OR FEELINGS CHANGE SUDDENLY", "ITEM_16: I TALK TOO MUCH", "ITEM_17: I TEASE OTHERS A LOT", "ITEM_18: I HAVE A HOT TEMPER", "ITEM_19: I THREATEN TO HURT PEOPLE", "ITEM_2: I BRAG", "ITEM_20: I AM LOUDER THAN OTHER KIDS", "ITEM_3: I AM MEAN TO OTHERS", "ITEM_4: I TRY TO GET A LOT OF ATTENTION", "ITEM_5: I DESTROY MY OWN THINGS", "ITEM_6: I DESTROY THINGS BELONGING TO OTHERS", "ITEM_7: I DISOBEY MY PARENTS", "ITEM_8: I DISOBEY AT SCHOOL", "ITEM_9: I AM JEALOUS OF OTHERS" ), class = "factor"), difficulty = c(2.31179818110545, 1.95215237740899, 1.93479536058926, 1.62610855327073, 1.62188759115818, 1.45137543733965, 0.942552101641177, 0.899418119889782, 0.7275219669431, 0.617925967008653, 0.612883990709181, 0.399477905189577, 0.322099696946661, 0.31707700560997, 0.209021078266059, 0.199236065264793, 0.0602331732900628, -0.311554806052955, -0.677772822413495, -1.15013757942119)), .Names = c("item", "difficulty" ), row.names = c(NA, -20L), class = "data.frame") Thank you in advance.

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  • R scatterplot overplotting color

    - by rgeekay
    So far I have this: qplot(df[[1]], as.numeric(rownames(df)), group=df[[2]], color=df[[2]], ylab="") I want to use different colors for the points in the 2 groups - perhaps a lighter shade for the what's in black now and a darker - say, red for what's in blue. Also, I want to use hexbin kind of thing for group=0 but not for group=1. I'm not able to get the syntax to get this working. In the current plot 0 is in black and 1 is in blue. Added: I worked on it some more, and by using factor and scale_colour_manual, I got the grey color for 0 and red for 1: > palette1 [1] "grey" "red" "blue" "violet" "black" fy=factor(y, labels=c('grey', 'red')) qplot(x, seq(1:length(x)),col=fy, ylab="") + geom_point() + scale_colour_manual(values=palette1) Pending questions are: How to first plot all the grey and then red on top (some of the red is now hidden because the grey is plotted over). How to apply the hexbin logic for group0 i.e. the grey points only and not for the red.

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  • How to enable `geom_text` to recognize `aes` in QPLOT (R programming)

    - by neversaint
    I have a data that looks like this ensg mirna_hgc time value perc id ENSG00000211521 MIR665 x 89 2.07612456747405 1 ENSG00000207787 MIR98 x 73 1.73010380622837 2 ... ENSG00000207827 MIR30A y 99 21.4532871972318 288 ENSG00000207757 MIR93 y 94 1.73010380622837 289 What I'm trying to do is to create a facet plot with label on top of it. The label can be easily called from the perc column. Using this code: dat.m <- read.delim("http://dpaste.com/1271039/plain/",header=TRUE,sep=" ") qplot(value, data=dat.m,facets=time~.,binwidth=1,main="")+ xlab("Value")+ ylab("Count")+ theme(legend.position="none")+ stat_bin(aes(value,label=sprintf("%.01f",perc)),geom="text") But it gave me this error: Error: geom_text requires the following missing aesthetics: label What I'm trying to do is to generate this plot:

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  • Best practise for Progress Bar in Python's PyGTK

    - by Matthew Walker
    I would like to get feedback on others' opinions of best practice for how to implement a progress bar in Python's PyGTK. The work that the progress bar was to represent was very significant computationally. Therefore, I wanted the work to be done in a separate process (thus giving the operating system the possibility to run it on a different core). I wanted to be able to start the work, and then continue to use the GUI for other tasks while waiting for the results. I have seen many people asking this question indirectly, but I have not seen any concrete expert advice. I hope that by asking this question we will see a community's combined expertise. I have read the FAQ and I hope that "Programmers" is the right place to ask.

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  • How do I generate a core dump from apache

    - by blockhead
    I have a script which intermittently returns a white screen of death in firefox and Error 324 (net::ERR_EMPTY_RESPONSE): Unknown error. chrome. When I try to access the script using a PHP HTTP client (like Zend_Http_Client), intermittently I get an exception (sorry I don't have the exact message on me at the moment). I suspect a segfault. This is further buttressed by the lines in my error log that look like this: [Thu Mar 18 16:03:02 2010] [notice] child pid 845 exit signal Segmentation fault (11) Now, I'm running RedHat, and I know that RedHat doesn't generate core dumps out-of-the-box. I followed the instructions here http://kbase.redhat.com/faq/docs/DOC-5353, but I'm not seeing any core dumps. How do I generate a core dump?

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  • upgraded "Compiz' and "Unity", now no Unity 3D on screen

    - by user18432
    Today when I logged in to my Ubuntu 12.04, the update manager told me of some upgrades. Compiz and Unity were in those upgrades. After I installed the upgrades, I can no longer get the Unity panel on the left side of screen or the systray at the top of screen. I now have to run Ubuntu 12.04 with Unity 2D. My laptop is a HP Pavilion dv9000 with Nvidia GeForce Go 7600 video. I tried to run "unity --reset" but it says there are serious issues with compiz. I have cut & pasted the read out from the terminal below. [09:35:02] xxxxxxx@L01U1204:~$ unity --reset unity-panel-service: no process found Checking if settings need to be migrated ...no Checking if internal files need to be migrated ...no Backend : gconf Integration : true Profile : unity Adding plugins Initializing core options...done compiz (core) - Warn: failed to receive ConfigureNotify event on 0x2e00004 compiz (core) - Warn: failed to receive ConfigureNotify event on 0x580005a compiz (core) - Warn: failed to receive ConfigureNotify event on 0x3600006 compiz (core) - Warn: failed to receive ConfigureNotify event on 0x3200255 compiz (core) - Warn: failed to receive ConfigureNotify event on 0x1600002 compiz (core) - Warn: failed to receive ConfigureNotify event on 0x1400002 Initializing composite options...done Initializing opengl options...done Initializing decor options...done Initializing vpswitch options...done Initializing snap options...done Initializing mousepoll options...done Initializing resize options...done Initializing place options...done Initializing move options...done Initializing wall options...done Initializing grid options...done I/O warning : failed to load external entity "/home/brwright/.compiz/session/10afaca1703486b216133648409481824100000130110002" Initializing session options...done Initializing gnomecompat options...done Initializing animation options...done Initializing fade options...done Initializing unitymtgrabhandles options...done Initializing workarounds options...done Initializing scale options...done compiz (expo) - Warn: failed to bind image to texture Initializing expo options...done Initializing ezoom options...done compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libunityshell.so' : /usr/lib/compiz/libunityshell.so: undefined symbol: _ZNK5unity4dash10Controller6windowEv compiz (core) - Error: Couldn't load plugin 'unityshell' compiz (core) - Warn: unhandled ConfigureNotify on 0x7000090! compiz (core) - Warn: this should never happen. you should probably file a bug about this. compiz (core) - Warn: unhandled ConfigureNotify on 0x7000093! compiz (core) - Warn: this should never happen. you should probably file a bug about this. compiz (core) - Warn: unhandled ConfigureNotify on 0x7000096! compiz (core) - Warn: this should never happen. you should probably file a bug about this. compiz (core) - Warn: unhandled ConfigureNotify on 0x7000099! compiz (core) - Warn: this should never happen. you should probably file a bug about this. compiz (core) - Warn: unhandled ConfigureNotify on 0x700009c! compiz (core) - Warn: this should never happen. you should probably file a bug about this. compiz (core) - Warn: unhandled ConfigureNotify on 0x700009f! compiz (core) - Warn: this should never happen. you should probably file a bug about this. Initializing annotate options...done Initializing blur options...done Initializing clone options...done Initializing colorfilter options...done Initializing commands options...done Initializing cube options...done Initializing imgjpeg options...done Initializing kdecompat options...done Initializing mag options...done Initializing neg options...done Initializing obs options...done Initializing opacify options...done Initializing put options...done Initializing resizeinfo options...done Initializing ring options...done Initializing rotate options...done Initializing scaleaddon options...done Initializing screenshot options...done Initializing shift options...done Initializing staticswitcher options...done Initializing switcher options...done Initializing thumbnail options...done Initializing unityshell options...done Initializing water options...done Initializing winrules options...done Initializing wobbly options...done Setting Update "main_menu_key" Setting Update "run_key" Starting gtk-window-decorator As you can see the terminal never comes back to the CI prompt. I must do a control C to get to the CI prompt, but then the OS is frozen. I have to reboot and run Unity 2D in able to do anything on my laptop. I hope I have explained this enough and provided some useful info. I am at a loss to understand what the problem is, or what exactly what is causing the problem. Is it Unity or Compiz? Can anyone help?

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  • How open is open core and is that open enough

    <b>ZDNet:</b> "The idea is that you make the center of your product open source, but put the rest under a paid license. This is supposed to make your venture capital backers happy. You gain the benefits of open source but customers aren&#8217;t &#8220;stealing&#8221; the software."

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