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• Ubuntu 13.10 - How to disable LVM and cryptsetup? cryptsetup: evms_activate is not available

  - by NeverEndingQueue

  I am trying to remove whole drive encryption from my Ubuntu installation. I've run Ubuntu from Live CD, mounted crypt partition and copied it to another partition /dev/sda3. sudo cryptsetup luksOpen /dev/sda5 crypt1 sudo dd if=/dev/ubuntu-vg/root of=/dev/sda3 bs=1M After that I've run boot-repair: https://help.ubuntu.com/community/Boot-Repair Added entry to /etc/fstab: UUID=<uuid> / ext4 errors=remount-ro 0 1 Of course I've replaced with blkid result of my /dev/sda3. I've also deleted overlayfs and tmpfs lines from /etc/fstab. (I've just compared it to content of /etc/fstab in non-encrypted Ubuntu installation and could not find overlayfs and tmpfs). I've chrooted from LiveCD into my system and rebuilt initramfs: http://blog.leenix.co.uk/2012/07/evmsactivate-is-not-available-on-boot.html I've also removed cryptsetup using apt-get remove. Basically I can easily mount my system partition from Live CD (without setting up the encryption and LVM stuff), but can not boot from it. Instead I see: cryptsetup: evms_activate is not available When I've chosen the Recovery mode I've seen this: Begin: Mounting root file system ... Begin: Running /script/local-top ... Reading all physical volumes. This may take a while ... No volume groups found cryptsetup: evms_activate is not available Begin: Waiting for encrytpted source device ... My /etc/crypttab is empty. I am pretty sure that system tries to find encrypted partition, search for LVMs etc. Do you have ideas what could be the problem or how can I fix it? Thanks

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• Can't mount hard drive. Ubuntu 12.04

  - by Sam

  I am trying to recover some pictures on my 320 GB Hard Disk, so I put in a Live Ubuntu CD and am in that right now. In the devices list, it shows my USB drive, but not my 320 GB Hard Disk. I can see the disk in Disk Utility (it says it's on /dev/sda), but it's not mounted, and it says it has a few bad sectors but it is OK. In Disk Usage Analyzer, it says my maximum capacity is 13.4 GB, so it's definitely not using the 320 GB Hard Disk. I tried the following: sudo mkdir /media/newhd (worked) sudo mount /dev/sda /media/newhd (didn't work. it says I must specify the filesystem type) I then tried: fsck.ext4 -f /dev/sda (didn't work. Said: Superblock invalid, trying to backup blocks. then: Bad magic number in super-block while trying to open /dev/sda. The superblock could not be read or does not describe a correct ext2 filesystem. If the device is valid and it contains an ext2 filesystem (and not swap or ufs or something else), then the superblock is corrupt, and you might try running e2fsck with an alternate superblock) Does anyone have any ideas? The whole problem started when my Windows Vista said "Can't find operating system". Any ideas on how I can get on to my hard drive at /dev/sda?

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• Grub rescue, unknown file system. Can't boot into Windows 7

  - by Sam J

  So, I'm confused, so I'm also going to use this question to get clarification and fix my computer. So, some background: I had Windows 7 on a 1 TB HDD and decided to partition my hard drive into two ~500 GB, one for Windows 7 and one for Ubuntu or whatever flavour I desired (like a sandbox partition...) I installed Ubuntu but the installation had issues so I decided to uninstall. Note before uninstallation I had to press f12 when I turned on to boot from my primary HDD, then choose what OS I wanted to use. Undesirable, but it worked. Anyway, after I decided to uninstall Ubuntu I went into Windows 7 Start Computer Manage and deleted the EXT4 filesystem (Ubuntu parition) giving me 4xx GB of free space. However when I restarted Windows 7, I am now unable to boot Windows. When I DON'T hit f12, I see a blank screen with a flashing underscore. When I DO hit f12, I choose my primary HDD, and then I get a GRUB error: Unknown filesystem: grub rescue _ Something I'm unclear of: GRUB boots linux partitions, right? What boots Windows? Is GRUB "overwriting" the Windows bootloader? How can I completely get Windows back to normal? (IE, It boots automatically without hitting f12.) Thanks for any help, I'm on a live CD version of Ubuntu right now until I can get back on Windows.

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• Wipe free space on LVM-LUKS (dm-crypt) Volume

  - by peter4887

  My three partitions for my system are created with LVM on a LUKS partition (dm-crypt). These are /home, / and swap. The filesystem is ext4. They are encrypted, because they are on my laptop and I don't want that some laptop thieves get my data. But I often share my laptop with other people so they can access my encrypted partitions. I don't want that these people can recover my cache and all the data I deleted. So I'm now trying to wipe all my free space on /home to prevent against recovering with tools like photorec. (one overwrite should do, the need of multiple overwriting is just a rumor) But still I haven't found any solution to wipe this free space successfully. I tried dd if=/dev/zero of=/home/fillitup bs=512 count=[count of free sectiors] so my partition was complete full of data. df /dev/mapper/home said 100% is used and there are 0 sectors available. But I could still recover gigs of data with photorec, although I selected to recover just form the free space. photorec displays: /dev/mapper/home - 340 GB / 317 GiB (RO) , but df displays that the size of /home is just 313G, why are there these differences and what did the 340GB means? It looks like there is a place on my /dev/mapper/home partition, that I can't access to overwrite, but I can access it to recover. I also checked for corrupted sectors, but there aren't any. Maybe this is the space between my existing files? Did anyone knows why I can't wipe my free space with dd, and how I can find the location of the loads of recoverable files, to securely delete them?

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• Automatically creating volume partitions on boot

  - by Justin Meltzer

  I followed this guide: http://www.mongodb.org/display/DOCS/Amazon+EC2+Quickstart to set up Mongodb. It had me create a RAID 10 array out of the four devices on EBS. Then it had me create a physical volume, a volume group, and three logical volumes out of that RAID 10 array. Lastly it had me create ext4 filesystems out of the logical volumes and mount them. Now the quickstart guide had me put two things in place so that these steps would be replicated on reboot of the system. It had me add some instructions to the mdadm.conf file to automatically create the RAID 10 array, and it also had me add instructions to the fstab file to automatically mount the filesystem for each logical volume. However, the quickstart guide does not have anything for automatically creating the logical volumes from the RAID 10 array. I checked my system and see that each of the four devices are part of a RAID array: $ sudo mdadm -Q /dev/sdh1 /dev/sdh1: is not an md array /dev/sdh1: device 0 in 4 device unknown raid10 array. Use mdadm --examine for more detail. However, the filesystem is never created or mounted from fstab because it's trying to mount it from logical volumes that were never created (or so it seems). My question is, how can I automatically accomplish all the steps from the quickstart guide on a reboot of the system, and what config file do I need to add data to so that I can automatically create these volume partions after the RAID 10 is created but before the filesystem is mounted. Also I'm unsure whether fstab actually creates and mounts the filesystem or just mounts the filesystem.

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• Partitioning of Ubuntu server which will use OpenVZ and encrypted partitions (unlocked through SSH l

  - by DeletedAccount

  Hi, I'm about to install a server. Some context: My HDD is 1 TB and I have 2 GB RAM Ubuntu Server Lucid Lynx AMD 64 I will use OpenVZ and have most functionality separated into containers. To support disk quotas I need to use ext3 (not ext4) for the container partition. Each time I reboot the server I want to be forced to login through SSH and mount the encrypted partitions by typing my password (if someone steals the server, no critical data should be available). I want to have as much as possible encrypted. Yet I want to be able to login through SSH as I don't have a monitor or keyboard at the server. I am not sure how big I need my partitions to be. Being able to resize them later would be nice. I guess it implies using LVM? But the manual partition mount using SSH is also very important (in fact it's more important, if I have to pick one). How do you recommend that I partition the HDD? If I have daemons which needs the encrypted partitions, will they fail and can I just restart them after mounting the needed partitions?

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• Ubuntu's garbage collection cron job for PHP sessions takes 25 minutes to run, why?

  - by Lamah

  Ubuntu has a cron job set up which looks for and deletes old PHP sessions: # Look for and purge old sessions every 30 minutes 09,39 * * * * root [ -x /usr/lib/php5/maxlifetime ] \ && [ -d /var/lib/php5 ] && find /var/lib/php5/ -depth -mindepth 1 \ -maxdepth 1 -type f -cmin +$(/usr/lib/php5/maxlifetime) ! -execdir \ fuser -s {} 2> /dev/null \; -delete My problem is that this process is taking a very long time to run, with lots of disk IO. Here's my CPU usage graph: The cleanup running is represented by the teal spikes. At the beginning of the period, PHP's cleanup jobs were scheduled at the default 09 and 39 minutes times. At 15:00 I removed the 39 minute time from cron, so a cleanup job twice the size runs half as often (you can see the peaks get twice as wide and half as frequent). Here are the corresponding graphs for IO time: And disk operations: At the peak where there were about 14,000 sessions active, the cleanup can be seen to run for a full 25 minutes, apparently using 100% of one core of the CPU and what seems to be 100% of the disk IO for the entire period. Why is it so resource intensive? An ls of the session directory /var/lib/php5 takes just a fraction of a second. So why does it take a full 25 minutes to trim old sessions? Is there anything I can do to speed this up? The filesystem for this device is currently ext4, running on Ubuntu Precise 12.04 64-bit. EDIT: I suspect that the load is due to the unusual process "fuser" (since I expect a simple rm to be a damn sight faster than the performance I'm seeing). I'm going to remove the use of fuser and see what happens.

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• Ubuntu 12.04 can't boot after installing with software RAID 1

  - by Bill

  I've been trying to install Ubuntu with software RAID on my server and there is obviously something that I don't understand about the process. This is the guide that I followed: https://help.ubuntu.com/11.04/serverguide/advanced-installation.html I have two identical 1 TB disks in my server. I went through the initial install process and manually set up my partitions. On each disk I set up: (1) 100 MB partition for EFI boot (I didn't originally have this but added it based on a forum post I found after my original install failed to boot, I ended up with EFIboot since that was what the 'guided partitioning' decided to do) (1) 970 MB partition for / (1) 30 MB partition for swap I then created new RAID 1 disks combining the two partitions, one from each disk, such that each partition is mirrored. I then configured their usage as stated above. After saving the configuration I said yes to boot in a degraded state. The rest of the setup went normally, no errors of any kind. I saw GRUB being installed and again no errors. However, after rebooting the server I get the dreaded 'Insert boot media' and nothing happens. I loaded up the recovery disk and the mdadm configuration looks correct. md0 is my EFIBoot partition md1 is my \ partition using ext4 md2 is my swap partition Running file -s /dev/md0 doesn't indicate that GRUB is there and so I attempted to reinstall GRUB using the recovery disk. I selected the md0 disk and it appeared to install just fine. Running file -s /dev/md1 shows the error needs journal recovery, I'm not sure if that's related or not or how to fix that. Rebooting gives me the same problem, no boot media found. I've searched around the internet but can't figure out what to do next or more importantly how to troubleshoot what exactly is going wrong. Thanks!

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• Linux Has Become Very Slow Dealing With Large Data

  - by Kohjah Breese

  Last year I bought a computer, for around $1,800, so it is relatively high-end. When I first got it I was particularly pleased at how quick it dealt with large MySQL queries, imports and exports. But somewhere along the way something has gone wrong and I am not sure how to diagnose the problem. Any job that involves processing large amounts of data, e.g. gzipping file c. 1GB+, UPDATEs on large MySQL tables etc. have become very slow. I just performed an intensive alter statement on a 240,000,000 row table on a remote server, which is lower spec. This took about 10 minutes. However, performing the same query on a 167,000,000 row table on my computer went fine until it hit 860MB. Now it is only writing about 1MB every 15 seconds. Does anyone have any advice as to debugging what the issue is? I am using LinuxMint (based on Ubuntu 12.04.) The home partition is encrypted, which really slows down gzip. I have noticed the swap is barely used, but am not sure if that is because there is more than enough RAM. The filesystem is ext4. The MySQL server is on a separate hard drive, but it was fine when I first installed it. Other than the above issues, there are no other problems with it. I am going to install a fresh Ubuntu on the 4th hard drive to see if that is any different.

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• How to chain GRUB2 for Ubuntu 10.04 from Truecrypt & its bootloader (multi boot alongside Windows XP partition)?

  - by Rob

  I want Truecrypt to ask for password for Windows XP as usual but with the standard [ESC] option, on selecting that, i.e via Escape key, I want it to find the grub for the (unencrypted) Ubuntu install. I've installed Windows XP on the 120Gb hard drive of a Toshiba NB100 netbook then partitioned to make room for Ubuntu 10.04 and installed that after the Windows XP install. When I encrypt Windows XP, Truecrypt will overwrite the grub entry in the master boot record (MBR), I believe (?) and I won't be able to choose between XP and Ubuntu anymore. So I need to restore it back. I've searched fairly extensively for answers on Ubuntu forums and elsewhere but have not yet found a complete answer that covers all eventualities, scenarios and error messages, or otherwise they talk of legacy GRUB and not GRUB2. Ubuntu 10.04 uses GRUB2. My setup: Partitions: Windows XP, NTFS (to be encrypted with Truecrypt), 40Gb /boot (Ext4, 1Gb) Ubuntu swap, 4Gb Ubuntu / (root) - main filesystem (20gb) NTFS share, 55Gb I know that the Truecrypt boot loader replaces the GRUB when boot up because I've already tried it on another laptop. I want boot loader screen to look something like the usual: Truecrypt Enter password: (or [ESC] to skip) password is for WindowsXP and on pressing [ESC] for it to find the Ubuntu grub to boot from Thanks in advance for your help. The key area of the problem is how to instruct Truecrypt when escape key is pressed, and how the Grub/Ubuntu can be made visible to the truecrypt bootloader to find it, when the esc key is pressed. Also knowing as chaining.

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• Raspberry Pi how to format HDD

  - by Speed

  Hi I am very new to Raspberry Pi environment, so looking for a bit of help to format a usb hard disk drive. I ran lsblk and got sda 8:0 0 37.3G 0 disk sda1 8:1 0 37.3G 0 part looking on web, if tried the following "sudo mkfs.ext4 /dev/sda1 -L USB40gb" it did something but when I tried to mount the drive again, it still showed the files that were there before and I can not create new file/folder "Error creating directory: Permission denied" I am writing this from my windows 8.1 pc so can not cut and paste from the pi. trying to format its output is a bit hard. Oh, there is Nothing written after the word "part" above. There use to be /media/USB40gb so I have done something because this has disappeared. I am using PCManFM 0.9.10 It does not have a format option, which would make life a lot easier, but then its not windows. I think I am running the basic linux os for the pi. It boots to a graphic environment, but I do not know how to advise what it is. I think its OpenBox 2.0.4 Thanks in advance Speed PS: I reran the format string above but this time I changed the label to read USB37gb. I did this to confirm that I was in fact formatting the right drive. Low and behold, it actually formatted the drive, wiping everything from it. Great ... testing it by creating a new folder on the drive and get error msg Permission Denied! So I have fixed the formatting issue by trial and error but still can't use the drive... Suggestions anyone?

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• Apache mod_disk_cache on a seperate drive

  - by pavs

  how can I set Apache mod_disk_cache on a separate drive from where the OS/Apache is installed? I have set up this on my apache2.conf: <IfModule mod_cache_disk.c> # cache cleaning is done by htcacheclean, which can be configured in # /etc/default/apache2 # # For further information, see the comments in that file, # /usr/share/doc/apache2/README.Debian, and the htcacheclean(8) # man page. # This path must be the same as the one in /etc/default/apache2 CacheRoot /media/cacheHD # This will also cache local documents. It usually makes more sense to # put this into the configuration for just one virtual host. CacheEnable disk / # The result of CacheDirLevels * CacheDirLength must not be higher than # 20. Moreover, pay attention on file system limits. Some file systems # do not support more than a certain number of inodes and # subdirectories (e.g. 32000 for ext3) CacheDirLevels 2 CacheDirLength 1 </IfModule> and it doesn't seem to be caching anything at all. The drive itself is a freshly installed ssd drive formatted with ext4.

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• MySQL is running VERY slow

  - by user1032531

  I have two servers: a VPS and a laptop. I recently re-built both of them, and MySQL is running about 20 times slower on the laptop. Both servers used to run CentOS 5.8 and I think MySQL 5.1, and the laptop used to do great so I do not think it is the hardware. For the VPS, my provider installed CentOS 6.4, and then I installed MySQL 5.1.69 using yum with the CentOS repo. For the laptop, I installed CentOS 6.4 basic server and then installed MySQL 5.1.69 using yum with the CentOS repo. my.cnf for both servers are identical, and I have shown below. For both servers, I've also included below the output from SHOW VARIABLES; as well as output from sysbench, file system information, and cpu information. I have tried adding skip-name-resolve, but it didn't help. The matrix below shows the SHOW VARIABLES output from both servers which is different. Again, MySQL was installed the same way, so I do not know why it is different, but it is and I think this might be why the laptop is executing MySQL so slowly. Why is the laptop running MySQL slowly, and how do I fix it? Differences between SHOW VARIABLES on both servers +---------------------------+-----------------------+-------------------------+ | Variable | Value-VPS | Value-Laptop | +---------------------------+-----------------------+-------------------------+ | hostname | vps.site1.com | laptop.site2.com | | max_binlog_cache_size | 4294963200 | 18446744073709500000 | | max_seeks_for_key | 4294967295 | 18446744073709500000 | | max_write_lock_count | 4294967295 | 18446744073709500000 | | myisam_max_sort_file_size | 2146435072 | 9223372036853720000 | | myisam_mmap_size | 4294967295 | 18446744073709500000 | | plugin_dir | /usr/lib/mysql/plugin | /usr/lib64/mysql/plugin | | pseudo_thread_id | 7568 | 2 | | system_time_zone | EST | PDT | | thread_stack | 196608 | 262144 | | timestamp | 1372252112 | 1372252046 | | version_compile_machine | i386 | x86_64 | +---------------------------+-----------------------+-------------------------+ my.cnf for both servers [root@server1 ~]# cat /etc/my.cnf [mysqld] datadir=/var/lib/mysql socket=/var/lib/mysql/mysql.sock user=mysql # Disabling symbolic-links is recommended to prevent assorted security risks symbolic-links=0 [mysqld_safe] log-error=/var/log/mysqld.log pid-file=/var/run/mysqld/mysqld.pid innodb_strict_mode=on sql_mode=TRADITIONAL # sql_mode=STRICT_TRANS_TABLES,NO_ZERO_DATE,NO_ZERO_IN_DATE character-set-server=utf8 collation-server=utf8_general_ci log=/var/log/mysqld_all.log [root@server1 ~]# VPS SHOW VARIABLES Info Same as Laptop shown below but changes per above matrix (removed to allow me to be under the 30000 characters as required by ServerFault) Laptop SHOW VARIABLES Info auto_increment_increment 1 auto_increment_offset 1 autocommit ON automatic_sp_privileges ON back_log 50 basedir /usr/ big_tables OFF binlog_cache_size 32768 binlog_direct_non_transactional_updates OFF binlog_format STATEMENT bulk_insert_buffer_size 8388608 character_set_client utf8 character_set_connection utf8 character_set_database latin1 character_set_filesystem binary character_set_results utf8 character_set_server latin1 character_set_system utf8 character_sets_dir /usr/share/mysql/charsets/ collation_connection utf8_general_ci collation_database latin1_swedish_ci collation_server latin1_swedish_ci completion_type 0 concurrent_insert 1 connect_timeout 10 datadir /var/lib/mysql/ date_format %Y-%m-%d datetime_format %Y-%m-%d %H:%i:%s default_week_format 0 delay_key_write ON delayed_insert_limit 100 delayed_insert_timeout 300 delayed_queue_size 1000 div_precision_increment 4 engine_condition_pushdown ON error_count 0 event_scheduler OFF expire_logs_days 0 flush OFF flush_time 0 foreign_key_checks ON ft_boolean_syntax + -><()~*:""&| ft_max_word_len 84 ft_min_word_len 4 ft_query_expansion_limit 20 ft_stopword_file (built-in) general_log OFF general_log_file /var/run/mysqld/mysqld.log group_concat_max_len 1024 have_community_features YES have_compress YES have_crypt YES have_csv YES have_dynamic_loading YES have_geometry YES have_innodb YES have_ndbcluster NO have_openssl DISABLED have_partitioning YES have_query_cache YES have_rtree_keys YES have_ssl DISABLED have_symlink DISABLED hostname server1.site2.com identity 0 ignore_builtin_innodb OFF init_connect init_file init_slave innodb_adaptive_hash_index ON innodb_additional_mem_pool_size 1048576 innodb_autoextend_increment 8 innodb_autoinc_lock_mode 1 innodb_buffer_pool_size 8388608 innodb_checksums ON innodb_commit_concurrency 0 innodb_concurrency_tickets 500 innodb_data_file_path ibdata1:10M:autoextend innodb_data_home_dir innodb_doublewrite ON innodb_fast_shutdown 1 innodb_file_io_threads 4 innodb_file_per_table OFF innodb_flush_log_at_trx_commit 1 innodb_flush_method innodb_force_recovery 0 innodb_lock_wait_timeout 50 innodb_locks_unsafe_for_binlog OFF innodb_log_buffer_size 1048576 innodb_log_file_size 5242880 innodb_log_files_in_group 2 innodb_log_group_home_dir ./ innodb_max_dirty_pages_pct 90 innodb_max_purge_lag 0 innodb_mirrored_log_groups 1 innodb_open_files 300 innodb_rollback_on_timeout OFF innodb_stats_method nulls_equal innodb_stats_on_metadata ON innodb_support_xa ON innodb_sync_spin_loops 20 innodb_table_locks ON innodb_thread_concurrency 8 innodb_thread_sleep_delay 10000 innodb_use_legacy_cardinality_algorithm ON insert_id 0 interactive_timeout 28800 join_buffer_size 131072 keep_files_on_create OFF key_buffer_size 8384512 key_cache_age_threshold 300 key_cache_block_size 1024 key_cache_division_limit 100 language /usr/share/mysql/english/ large_files_support ON large_page_size 0 large_pages OFF last_insert_id 0 lc_time_names en_US license GPL local_infile ON locked_in_memory OFF log OFF log_bin OFF log_bin_trust_function_creators OFF log_bin_trust_routine_creators OFF log_error /var/log/mysqld.log log_output FILE log_queries_not_using_indexes OFF log_slave_updates OFF log_slow_queries OFF log_warnings 1 long_query_time 10.000000 low_priority_updates OFF lower_case_file_system OFF lower_case_table_names 0 max_allowed_packet 1048576 max_binlog_cache_size 18446744073709547520 max_binlog_size 1073741824 max_connect_errors 10 max_connections 151 max_delayed_threads 20 max_error_count 64 max_heap_table_size 16777216 max_insert_delayed_threads 20 max_join_size 18446744073709551615 max_length_for_sort_data 1024 max_long_data_size 1048576 max_prepared_stmt_count 16382 max_relay_log_size 0 max_seeks_for_key 18446744073709551615 max_sort_length 1024 max_sp_recursion_depth 0 max_tmp_tables 32 max_user_connections 0 max_write_lock_count 18446744073709551615 min_examined_row_limit 0 multi_range_count 256 myisam_data_pointer_size 6 myisam_max_sort_file_size 9223372036853727232 myisam_mmap_size 18446744073709551615 myisam_recover_options OFF myisam_repair_threads 1 myisam_sort_buffer_size 8388608 myisam_stats_method nulls_unequal myisam_use_mmap OFF net_buffer_length 16384 net_read_timeout 30 net_retry_count 10 net_write_timeout 60 new OFF old OFF old_alter_table OFF old_passwords OFF open_files_limit 1024 optimizer_prune_level 1 optimizer_search_depth 62 optimizer_switch index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on pid_file /var/run/mysqld/mysqld.pid plugin_dir /usr/lib64/mysql/plugin port 3306 preload_buffer_size 32768 profiling OFF profiling_history_size 15 protocol_version 10 pseudo_thread_id 3 query_alloc_block_size 8192 query_cache_limit 1048576 query_cache_min_res_unit 4096 query_cache_size 0 query_cache_type ON query_cache_wlock_invalidate OFF query_prealloc_size 8192 rand_seed1 rand_seed2 range_alloc_block_size 4096 read_buffer_size 131072 read_only OFF read_rnd_buffer_size 262144 relay_log relay_log_index relay_log_info_file relay-log.info relay_log_purge ON relay_log_space_limit 0 report_host report_password report_port 3306 report_user rpl_recovery_rank 0 secure_auth OFF secure_file_priv server_id 0 skip_external_locking ON skip_name_resolve OFF skip_networking OFF skip_show_database OFF slave_compressed_protocol OFF slave_exec_mode STRICT slave_load_tmpdir /tmp slave_max_allowed_packet 1073741824 slave_net_timeout 3600 slave_skip_errors OFF slave_transaction_retries 10 slow_launch_time 2 slow_query_log OFF slow_query_log_file /var/run/mysqld/mysqld-slow.log socket /var/lib/mysql/mysql.sock sort_buffer_size 2097144 sql_auto_is_null ON sql_big_selects ON sql_big_tables OFF sql_buffer_result OFF sql_log_bin ON sql_log_off OFF sql_log_update ON sql_low_priority_updates OFF sql_max_join_size 18446744073709551615 sql_mode sql_notes ON sql_quote_show_create ON sql_safe_updates OFF sql_select_limit 18446744073709551615 sql_slave_skip_counter sql_warnings OFF ssl_ca ssl_capath ssl_cert ssl_cipher ssl_key storage_engine MyISAM sync_binlog 0 sync_frm ON system_time_zone PDT table_definition_cache 256 table_lock_wait_timeout 50 table_open_cache 64 table_type MyISAM thread_cache_size 0 thread_handling one-thread-per-connection thread_stack 262144 time_format %H:%i:%s time_zone SYSTEM timed_mutexes OFF timestamp 1372254399 tmp_table_size 16777216 tmpdir /tmp transaction_alloc_block_size 8192 transaction_prealloc_size 4096 tx_isolation REPEATABLE-READ unique_checks ON updatable_views_with_limit YES version 5.1.69 version_comment Source distribution version_compile_machine x86_64 version_compile_os redhat-linux-gnu wait_timeout 28800 warning_count 0 VPS Sysbench Info [root@vps ~]# cat sysbench.txt sysbench 0.4.12: multi-threaded system evaluation benchmark Running the test with following options: Number of threads: 8 Doing OLTP test. Running mixed OLTP test Doing read-only test Using Special distribution (12 iterations, 1 pct of values are returned in 75 pct cases) Using "BEGIN" for starting transactions Using auto_inc on the id column Threads started! Time limit exceeded, exiting... (last message repeated 7 times) Done. OLTP test statistics: queries performed: read: 1449966 write: 0 other: 207138 total: 1657104 transactions: 103569 (1726.01 per sec.) deadlocks: 0 (0.00 per sec.) read/write requests: 1449966 (24164.08 per sec.) other operations: 207138 (3452.01 per sec.) Test execution summary: total time: 60.0050s total number of events: 103569 total time taken by event execution: 479.1544 per-request statistics: min: 1.98ms avg: 4.63ms max: 330.73ms approx. 95 percentile: 8.26ms Threads fairness: events (avg/stddev): 12946.1250/381.09 execution time (avg/stddev): 59.8943/0.00 [root@vps ~]# Laptop Sysbench Info [root@server1 ~]# cat sysbench.txt sysbench 0.4.12: multi-threaded system evaluation benchmark Running the test with following options: Number of threads: 8 Doing OLTP test. Running mixed OLTP test Doing read-only test Using Special distribution (12 iterations, 1 pct of values are returned in 75 pct cases) Using "BEGIN" for starting transactions Using auto_inc on the id column Threads started! Time limit exceeded, exiting... (last message repeated 7 times) Done. OLTP test statistics: queries performed: read: 634718 write: 0 other: 90674 total: 725392 transactions: 45337 (755.56 per sec.) deadlocks: 0 (0.00 per sec.) read/write requests: 634718 (10577.78 per sec.) other operations: 90674 (1511.11 per sec.) Test execution summary: total time: 60.0048s total number of events: 45337 total time taken by event execution: 479.4912 per-request statistics: min: 2.04ms avg: 10.58ms max: 85.56ms approx. 95 percentile: 19.70ms Threads fairness: events (avg/stddev): 5667.1250/42.18 execution time (avg/stddev): 59.9364/0.00 [root@server1 ~]# VPS File Info [root@vps ~]# df -T Filesystem Type 1K-blocks Used Available Use% Mounted on /dev/simfs simfs 20971520 16187440 4784080 78% / none tmpfs 6224432 4 6224428 1% /dev none tmpfs 6224432 0 6224432 0% /dev/shm [root@vps ~]# Laptop File Info [root@server1 ~]# df -T Filesystem Type 1K-blocks Used Available Use% Mounted on /dev/mapper/vg_server1-lv_root ext4 72383800 4243964 64462860 7% / tmpfs tmpfs 956352 0 956352 0% /dev/shm /dev/sdb1 ext4 495844 60948 409296 13% /boot [root@server1 ~]# VPS CPU Info Removed to stay under the 30000 character limit required by ServerFault Laptop CPU Info [root@server1 ~]# cat /proc/cpuinfo processor : 0 vendor_id : GenuineIntel cpu family : 6 model : 15 model name : Intel(R) Core(TM)2 Duo CPU T7100 @ 1.80GHz stepping : 13 cpu MHz : 800.000 cache size : 2048 KB physical id : 0 siblings : 2 core id : 0 cpu cores : 2 apicid : 0 initial apicid : 0 fpu : yes fpu_exception : yes cpuid level : 10 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx lm constant_tsc arch_perfmon pebs bts rep_good aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm lahf_lm ida dts tpr_shadow vnmi flexpriority bogomips : 3591.39 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 1 vendor_id : GenuineIntel cpu family : 6 model : 15 model name : Intel(R) Core(TM)2 Duo CPU T7100 @ 1.80GHz stepping : 13 cpu MHz : 800.000 cache size : 2048 KB physical id : 0 siblings : 2 core id : 1 cpu cores : 2 apicid : 1 initial apicid : 1 fpu : yes fpu_exception : yes cpuid level : 10 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx lm constant_tsc arch_perfmon pebs bts rep_good aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm lahf_lm ida dts tpr_shadow vnmi flexpriority bogomips : 3591.39 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: [root@server1 ~]# EDIT New Info requested by shakalandy [root@localhost ~]# cat /proc/meminfo MemTotal: 2044804 kB MemFree: 761464 kB Buffers: 68868 kB Cached: 369708 kB SwapCached: 0 kB Active: 881080 kB Inactive: 246016 kB Active(anon): 688312 kB Inactive(anon): 4416 kB Active(file): 192768 kB Inactive(file): 241600 kB Unevictable: 0 kB Mlocked: 0 kB SwapTotal: 4095992 kB SwapFree: 4095992 kB Dirty: 0 kB Writeback: 0 kB AnonPages: 688428 kB Mapped: 65156 kB Shmem: 4216 kB Slab: 92428 kB SReclaimable: 31260 kB SUnreclaim: 61168 kB KernelStack: 2392 kB PageTables: 28356 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB CommitLimit: 5118392 kB Committed_AS: 1530212 kB VmallocTotal: 34359738367 kB VmallocUsed: 343604 kB VmallocChunk: 34359372920 kB HardwareCorrupted: 0 kB AnonHugePages: 520192 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 HugePages_Surp: 0 Hugepagesize: 2048 kB DirectMap4k: 8556 kB DirectMap2M: 2078720 kB [root@localhost ~]# ps aux | grep mysql root 2227 0.0 0.0 108332 1504 ? S 07:36 0:00 /bin/sh /usr/bin/mysqld_safe --datadir=/var/lib/mysql --pid-file=/var/lib/mysql/localhost.badobe.com.pid mysql 2319 0.1 24.5 1470068 501360 ? Sl 07:36 0:57 /usr/sbin/mysqld --basedir=/usr --datadir=/var/lib/mysql --plugin-dir=/usr/lib64/mysql/plugin --user=mysql --log-error=/var/lib/mysql/localhost.badobe.com.err --pid-file=/var/lib/mysql/localhost.badobe.com.pid root 3579 0.0 0.1 201840 3028 pts/0 S+ 07:40 0:00 mysql -u root -p root 13887 0.0 0.1 201840 3036 pts/3 S+ 18:08 0:00 mysql -uroot -px xxxxxxxxxx root 14449 0.0 0.0 103248 840 pts/2 S+ 18:16 0:00 grep mysql [root@localhost ~]# ps aux | grep mysql root 2227 0.0 0.0 108332 1504 ? S 07:36 0:00 /bin/sh /usr/bin/mysqld_safe --datadir=/var/lib/mysql --pid-file=/var/lib/mysql/localhost.badobe.com.pid mysql 2319 0.1 24.5 1470068 501356 ? Sl 07:36 0:57 /usr/sbin/mysqld --basedir=/usr --datadir=/var/lib/mysql --plugin-dir=/usr/lib64/mysql/plugin --user=mysql --log-error=/var/lib/mysql/localhost.badobe.com.err --pid-file=/var/lib/mysql/localhost.badobe.com.pid root 3579 0.0 0.1 201840 3028 pts/0 S+ 07:40 0:00 mysql -u root -p root 13887 0.0 0.1 201840 3048 pts/3 S+ 18:08 0:00 mysql -uroot -px xxxxxxxxxx root 14470 0.0 0.0 103248 840 pts/2 S+ 18:16 0:00 grep mysql [root@localhost ~]# vmstat 1 procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu----- r b swpd free buff cache si so bi bo in cs us sy id wa st 0 0 0 742172 76376 371064 0 0 6 6 78 202 2 1 97 1 0 0 0 0 742164 76380 371060 0 0 0 16 191 467 2 1 93 5 0 0 0 0 742164 76380 371064 0 0 0 0 148 388 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 159 418 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 145 380 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 166 429 2 1 97 0 0 1 0 0 742164 76380 371064 0 0 0 0 148 373 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 149 382 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 168 408 2 0 97 0 0 0 0 0 742164 76380 371064 0 0 0 0 165 394 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 159 354 2 1 98 0 0 0 0 0 742164 76388 371060 0 0 0 16 180 447 2 0 91 6 0 0 0 0 742164 76388 371064 0 0 0 0 143 344 2 1 98 0 0 0 1 0 742784 76416 370044 0 0 28 580 360 678 3 1 74 23 0 1 0 0 744768 76496 367772 0 0 40 1036 437 865 3 1 53 43 0 0 1 0 747248 76596 365412 0 0 48 1224 561 923 3 2 53 43 0 0 1 0 749232 76696 363092 0 0 32 1132 512 883 3 2 52 44 0 0 1 0 751340 76772 361020 0 0 32 1008 472 872 2 1 52 45 0 0 1 0 753448 76840 358540 0 0 36 1088 512 860 2 1 51 46 0 0 1 0 755060 76936 357636 0 0 28 1012 481 922 2 2 52 45 0 0 1 0 755060 77064 357988 0 0 12 896 444 902 2 1 53 45 0 0 1 0 754688 77148 358448 0 0 16 1096 506 1007 1 1 56 42 0 0 2 0 754192 77268 358932 0 0 12 1060 481 957 1 2 53 44 0 0 1 0 753696 77380 359392 0 0 12 1052 512 1025 2 1 55 42 0 0 1 0 751028 77480 359828 0 0 8 984 423 909 2 2 52 45 0 0 1 0 750524 77620 360200 0 0 8 788 367 869 1 2 54 44 0 0 1 0 749904 77700 360664 0 0 8 928 439 924 2 2 55 43 0 0 1 0 749408 77796 361084 0 0 12 976 468 967 1 1 56 43 0 0 1 0 748788 77896 361464 0 0 12 992 453 944 1 2 54 43 0 1 1 0 748416 77992 361996 0 0 12 784 392 868 2 1 52 46 0 0 1 0 747920 78092 362336 0 0 4 896 382 874 1 1 52 46 0 0 1 0 745252 78172 362780 0 0 12 1040 444 923 1 1 56 42 0 0 1 0 744764 78288 363220 0 0 8 1024 448 934 2 1 55 43 0 0 1 0 744144 78408 363668 0 0 8 1000 461 982 2 1 53 44 0 0 1 0 743648 78488 364148 0 0 8 872 443 888 2 1 54 43 0 0 1 0 743152 78548 364468 0 0 16 1020 511 995 2 1 55 43 0 0 1 0 742656 78632 365024 0 0 12 928 431 913 1 2 53 44 0 0 1 0 742160 78728 365468 0 0 12 996 470 955 2 2 54 44 0 1 1 0 739492 78840 365896 0 0 8 988 447 939 1 2 52 46 0 0 1 0 738872 78996 366352 0 0 12 972 442 928 1 1 55 44 0 1 1 0 738244 79148 366812 0 0 8 948 549 1126 2 2 54 43 0 0 1 0 737624 79312 367188 0 0 12 996 456 953 2 2 54 43 0 0 1 0 736880 79456 367660 0 0 12 960 444 918 1 1 53 46 0 0 1 0 736260 79584 368124 0 0 8 884 414 921 1 1 54 44 0 0 1 0 735648 79716 368488 0 0 12 976 450 955 2 1 56 41 0 0 1 0 733104 79840 368988 0 0 12 932 453 918 1 2 55 43 0 0 1 0 732608 79996 369356 0 0 16 916 444 889 1 2 54 43 0 1 1 0 731476 80128 369800 0 0 16 852 514 978 2 2 54 43 0 0 1 0 731244 80252 370200 0 0 8 904 398 870 2 1 55 43 0 1 1 0 730624 80384 370612 0 0 12 1032 447 977 1 2 57 41 0 0 1 0 730004 80524 371096 0 0 12 984 469 941 2 2 52 45 0 0 1 0 729508 80636 371544 0 0 12 928 438 922 2 1 52 46 0 0 1 0 728888 80756 371948 0 0 16 972 439 943 2 1 55 43 0 0 1 0 726468 80900 372272 0 0 8 960 545 1024 2 1 54 43 0 1 1 0 726344 81024 372272 0 0 8 464 490 1057 1 2 53 44 0 0 1 0 726096 81148 372276 0 0 4 328 441 1063 2 1 53 45 0 1 1 0 726096 81256 372292 0 0 0 296 387 975 1 1 53 45 0 0 1 0 725848 81380 372284 0 0 4 332 425 1034 2 1 54 44 0 1 1 0 725848 81496 372300 0 0 4 308 386 992 2 1 54 43 0 0 1 0 725600 81616 372296 0 0 4 328 404 1060 1 1 54 44 0 procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu----- r b swpd free buff cache si so bi bo in cs us sy id wa st 0 1 0 725600 81732 372296 0 0 4 328 439 1011 1 1 53 44 0 0 1 0 725476 81848 372308 0 0 0 316 441 1023 2 2 52 46 0 1 1 0 725352 81972 372300 0 0 4 344 451 1021 1 1 55 43 0 2 1 0 725228 82088 372320 0 0 0 328 427 1058 1 1 54 44 0 1 1 0 724980 82220 372300 0 0 4 336 419 999 2 1 54 44 0 1 1 0 724980 82328 372320 0 0 4 320 430 1019 1 1 54 44 0 1 1 0 724732 82436 372328 0 0 0 388 363 942 2 1 54 44 0 1 1 0 724608 82560 372312 0 0 4 308 419 993 1 2 54 44 0 1 0 0 724360 82684 372320 0 0 0 304 421 1028 2 1 55 42 0 1 0 0 724360 82684 372388 0 0 0 0 158 416 2 1 98 0 0 1 1 0 724236 82720 372360 0 0 0 6464 243 855 3 2 84 12 0 1 0 0 724112 82748 372360 0 0 0 5356 266 895 3 1 84 12 0 2 1 0 724112 82764 372380 0 0 0 3052 221 511 2 2 93 4 0 1 0 0 724112 82796 372372 0 0 0 4548 325 1067 2 2 81 16 0 1 0 0 724112 82816 372368 0 0 0 3240 259 829 3 1 90 6 0 1 0 0 724112 82836 372380 0 0 0 3260 309 822 3 2 88 8 0 1 1 0 724112 82876 372364 0 0 0 4680 326 978 3 1 77 19 0 1 0 0 724112 82884 372380 0 0 0 512 207 508 2 1 95 2 0 1 0 0 724112 82884 372388 0 0 0 0 138 361 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 158 397 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 146 395 2 1 98 0 0 2 0 0 724112 82884 372388 0 0 0 0 160 395 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 163 382 1 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 176 422 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 134 351 2 1 98 0 0 0 0 0 724112 82884 372388 0 0 0 0 190 429 2 1 97 0 0 0 0 0 724104 82884 372392 0 0 0 0 139 358 2 1 98 0 0 0 0 0 724848 82884 372392 0 0 0 4 211 432 2 1 97 0 0 1 0 0 724980 82884 372392 0 0 0 0 166 370 2 1 98 0 0 0 0 0 724980 82884 372392 0 0 0 0 164 397 2 1 98 0 0 ^C [root@localhost ~]#

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• MySQL is running VERY slow on CentOS 6x (not 5x)

  - by user1032531

  I have two servers: a VPS and a laptop. I recently re-built both of them, and MySQL is running about 20 times slower on the laptop. Both servers used to run CentOS 5.8 and I think MySQL 5.1, and the laptop used to do great so I do not think it is the hardware. For the VPS, my provider installed CentOS 6.4, and then I installed MySQL 5.1.69 using yum with the CentOS repo. For the laptop, I installed CentOS 6.4 basic server and then installed MySQL 5.1.69 using yum with the CentOS repo. my.cnf for both servers are identical, and I have shown below. For both servers, I've also included below the output from SHOW VARIABLES; as well as output from sysbench, file system information, and cpu information. I have tried adding skip-name-resolve, but it didn't help. The matrix below shows the SHOW VARIABLES output from both servers which is different. Again, MySQL was installed the same way, so I do not know why it is different, but it is and I think this might be why the laptop is executing MySQL so slowly. Why is the laptop running MySQL slowly, and how do I fix it? Differences between SHOW VARIABLES on both servers +---------------------------+-----------------------+-------------------------+ | Variable | Value-VPS | Value-Laptop | +---------------------------+-----------------------+-------------------------+ | hostname | vps.site1.com | laptop.site2.com | | max_binlog_cache_size | 4294963200 | 18446744073709500000 | | max_seeks_for_key | 4294967295 | 18446744073709500000 | | max_write_lock_count | 4294967295 | 18446744073709500000 | | myisam_max_sort_file_size | 2146435072 | 9223372036853720000 | | myisam_mmap_size | 4294967295 | 18446744073709500000 | | plugin_dir | /usr/lib/mysql/plugin | /usr/lib64/mysql/plugin | | pseudo_thread_id | 7568 | 2 | | system_time_zone | EST | PDT | | thread_stack | 196608 | 262144 | | timestamp | 1372252112 | 1372252046 | | version_compile_machine | i386 | x86_64 | +---------------------------+-----------------------+-------------------------+ my.cnf for both servers [root@server1 ~]# cat /etc/my.cnf [mysqld] datadir=/var/lib/mysql socket=/var/lib/mysql/mysql.sock user=mysql # Disabling symbolic-links is recommended to prevent assorted security risks symbolic-links=0 [mysqld_safe] log-error=/var/log/mysqld.log pid-file=/var/run/mysqld/mysqld.pid innodb_strict_mode=on sql_mode=TRADITIONAL # sql_mode=STRICT_TRANS_TABLES,NO_ZERO_DATE,NO_ZERO_IN_DATE character-set-server=utf8 collation-server=utf8_general_ci log=/var/log/mysqld_all.log [root@server1 ~]# VPS SHOW VARIABLES Info Same as Laptop shown below but changes per above matrix (removed to allow me to be under the 30000 characters as required by ServerFault) Laptop SHOW VARIABLES Info auto_increment_increment 1 auto_increment_offset 1 autocommit ON automatic_sp_privileges ON back_log 50 basedir /usr/ big_tables OFF binlog_cache_size 32768 binlog_direct_non_transactional_updates OFF binlog_format STATEMENT bulk_insert_buffer_size 8388608 character_set_client utf8 character_set_connection utf8 character_set_database latin1 character_set_filesystem binary character_set_results utf8 character_set_server latin1 character_set_system utf8 character_sets_dir /usr/share/mysql/charsets/ collation_connection utf8_general_ci collation_database latin1_swedish_ci collation_server latin1_swedish_ci completion_type 0 concurrent_insert 1 connect_timeout 10 datadir /var/lib/mysql/ date_format %Y-%m-%d datetime_format %Y-%m-%d %H:%i:%s default_week_format 0 delay_key_write ON delayed_insert_limit 100 delayed_insert_timeout 300 delayed_queue_size 1000 div_precision_increment 4 engine_condition_pushdown ON error_count 0 event_scheduler OFF expire_logs_days 0 flush OFF flush_time 0 foreign_key_checks ON ft_boolean_syntax + -><()~*:""&| ft_max_word_len 84 ft_min_word_len 4 ft_query_expansion_limit 20 ft_stopword_file (built-in) general_log OFF general_log_file /var/run/mysqld/mysqld.log group_concat_max_len 1024 have_community_features YES have_compress YES have_crypt YES have_csv YES have_dynamic_loading YES have_geometry YES have_innodb YES have_ndbcluster NO have_openssl DISABLED have_partitioning YES have_query_cache YES have_rtree_keys YES have_ssl DISABLED have_symlink DISABLED hostname server1.site2.com identity 0 ignore_builtin_innodb OFF init_connect init_file init_slave innodb_adaptive_hash_index ON innodb_additional_mem_pool_size 1048576 innodb_autoextend_increment 8 innodb_autoinc_lock_mode 1 innodb_buffer_pool_size 8388608 innodb_checksums ON innodb_commit_concurrency 0 innodb_concurrency_tickets 500 innodb_data_file_path ibdata1:10M:autoextend innodb_data_home_dir innodb_doublewrite ON innodb_fast_shutdown 1 innodb_file_io_threads 4 innodb_file_per_table OFF innodb_flush_log_at_trx_commit 1 innodb_flush_method innodb_force_recovery 0 innodb_lock_wait_timeout 50 innodb_locks_unsafe_for_binlog OFF innodb_log_buffer_size 1048576 innodb_log_file_size 5242880 innodb_log_files_in_group 2 innodb_log_group_home_dir ./ innodb_max_dirty_pages_pct 90 innodb_max_purge_lag 0 innodb_mirrored_log_groups 1 innodb_open_files 300 innodb_rollback_on_timeout OFF innodb_stats_method nulls_equal innodb_stats_on_metadata ON innodb_support_xa ON innodb_sync_spin_loops 20 innodb_table_locks ON innodb_thread_concurrency 8 innodb_thread_sleep_delay 10000 innodb_use_legacy_cardinality_algorithm ON insert_id 0 interactive_timeout 28800 join_buffer_size 131072 keep_files_on_create OFF key_buffer_size 8384512 key_cache_age_threshold 300 key_cache_block_size 1024 key_cache_division_limit 100 language /usr/share/mysql/english/ large_files_support ON large_page_size 0 large_pages OFF last_insert_id 0 lc_time_names en_US license GPL local_infile ON locked_in_memory OFF log OFF log_bin OFF log_bin_trust_function_creators OFF log_bin_trust_routine_creators OFF log_error /var/log/mysqld.log log_output FILE log_queries_not_using_indexes OFF log_slave_updates OFF log_slow_queries OFF log_warnings 1 long_query_time 10.000000 low_priority_updates OFF lower_case_file_system OFF lower_case_table_names 0 max_allowed_packet 1048576 max_binlog_cache_size 18446744073709547520 max_binlog_size 1073741824 max_connect_errors 10 max_connections 151 max_delayed_threads 20 max_error_count 64 max_heap_table_size 16777216 max_insert_delayed_threads 20 max_join_size 18446744073709551615 max_length_for_sort_data 1024 max_long_data_size 1048576 max_prepared_stmt_count 16382 max_relay_log_size 0 max_seeks_for_key 18446744073709551615 max_sort_length 1024 max_sp_recursion_depth 0 max_tmp_tables 32 max_user_connections 0 max_write_lock_count 18446744073709551615 min_examined_row_limit 0 multi_range_count 256 myisam_data_pointer_size 6 myisam_max_sort_file_size 9223372036853727232 myisam_mmap_size 18446744073709551615 myisam_recover_options OFF myisam_repair_threads 1 myisam_sort_buffer_size 8388608 myisam_stats_method nulls_unequal myisam_use_mmap OFF net_buffer_length 16384 net_read_timeout 30 net_retry_count 10 net_write_timeout 60 new OFF old OFF old_alter_table OFF old_passwords OFF open_files_limit 1024 optimizer_prune_level 1 optimizer_search_depth 62 optimizer_switch index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on pid_file /var/run/mysqld/mysqld.pid plugin_dir /usr/lib64/mysql/plugin port 3306 preload_buffer_size 32768 profiling OFF profiling_history_size 15 protocol_version 10 pseudo_thread_id 3 query_alloc_block_size 8192 query_cache_limit 1048576 query_cache_min_res_unit 4096 query_cache_size 0 query_cache_type ON query_cache_wlock_invalidate OFF query_prealloc_size 8192 rand_seed1 rand_seed2 range_alloc_block_size 4096 read_buffer_size 131072 read_only OFF read_rnd_buffer_size 262144 relay_log relay_log_index relay_log_info_file relay-log.info relay_log_purge ON relay_log_space_limit 0 report_host report_password report_port 3306 report_user rpl_recovery_rank 0 secure_auth OFF secure_file_priv server_id 0 skip_external_locking ON skip_name_resolve OFF skip_networking OFF skip_show_database OFF slave_compressed_protocol OFF slave_exec_mode STRICT slave_load_tmpdir /tmp slave_max_allowed_packet 1073741824 slave_net_timeout 3600 slave_skip_errors OFF slave_transaction_retries 10 slow_launch_time 2 slow_query_log OFF slow_query_log_file /var/run/mysqld/mysqld-slow.log socket /var/lib/mysql/mysql.sock sort_buffer_size 2097144 sql_auto_is_null ON sql_big_selects ON sql_big_tables OFF sql_buffer_result OFF sql_log_bin ON sql_log_off OFF sql_log_update ON sql_low_priority_updates OFF sql_max_join_size 18446744073709551615 sql_mode sql_notes ON sql_quote_show_create ON sql_safe_updates OFF sql_select_limit 18446744073709551615 sql_slave_skip_counter sql_warnings OFF ssl_ca ssl_capath ssl_cert ssl_cipher ssl_key storage_engine MyISAM sync_binlog 0 sync_frm ON system_time_zone PDT table_definition_cache 256 table_lock_wait_timeout 50 table_open_cache 64 table_type MyISAM thread_cache_size 0 thread_handling one-thread-per-connection thread_stack 262144 time_format %H:%i:%s time_zone SYSTEM timed_mutexes OFF timestamp 1372254399 tmp_table_size 16777216 tmpdir /tmp transaction_alloc_block_size 8192 transaction_prealloc_size 4096 tx_isolation REPEATABLE-READ unique_checks ON updatable_views_with_limit YES version 5.1.69 version_comment Source distribution version_compile_machine x86_64 version_compile_os redhat-linux-gnu wait_timeout 28800 warning_count 0 VPS Sysbench Info Deleted to stay under 30000 characters. Laptop Sysbench Info [root@server1 ~]# cat sysbench.txt sysbench 0.4.12: multi-threaded system evaluation benchmark Running the test with following options: Number of threads: 8 Doing OLTP test. Running mixed OLTP test Doing read-only test Using Special distribution (12 iterations, 1 pct of values are returned in 75 pct cases) Using "BEGIN" for starting transactions Using auto_inc on the id column Threads started! Time limit exceeded, exiting... (last message repeated 7 times) Done. OLTP test statistics: queries performed: read: 634718 write: 0 other: 90674 total: 725392 transactions: 45337 (755.56 per sec.) deadlocks: 0 (0.00 per sec.) read/write requests: 634718 (10577.78 per sec.) other operations: 90674 (1511.11 per sec.) Test execution summary: total time: 60.0048s total number of events: 45337 total time taken by event execution: 479.4912 per-request statistics: min: 2.04ms avg: 10.58ms max: 85.56ms approx. 95 percentile: 19.70ms Threads fairness: events (avg/stddev): 5667.1250/42.18 execution time (avg/stddev): 59.9364/0.00 [root@server1 ~]# VPS File Info [root@vps ~]# df -T Filesystem Type 1K-blocks Used Available Use% Mounted on /dev/simfs simfs 20971520 16187440 4784080 78% / none tmpfs 6224432 4 6224428 1% /dev none tmpfs 6224432 0 6224432 0% /dev/shm [root@vps ~]# Laptop File Info [root@server1 ~]# df -T Filesystem Type 1K-blocks Used Available Use% Mounted on /dev/mapper/vg_server1-lv_root ext4 72383800 4243964 64462860 7% / tmpfs tmpfs 956352 0 956352 0% /dev/shm /dev/sdb1 ext4 495844 60948 409296 13% /boot [root@server1 ~]# VPS CPU Info Removed to stay under the 30000 character limit required by ServerFault Laptop CPU Info [root@server1 ~]# cat /proc/cpuinfo processor : 0 vendor_id : GenuineIntel cpu family : 6 model : 15 model name : Intel(R) Core(TM)2 Duo CPU T7100 @ 1.80GHz stepping : 13 cpu MHz : 800.000 cache size : 2048 KB physical id : 0 siblings : 2 core id : 0 cpu cores : 2 apicid : 0 initial apicid : 0 fpu : yes fpu_exception : yes cpuid level : 10 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx lm constant_tsc arch_perfmon pebs bts rep_good aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm lahf_lm ida dts tpr_shadow vnmi flexpriority bogomips : 3591.39 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 1 vendor_id : GenuineIntel cpu family : 6 model : 15 model name : Intel(R) Core(TM)2 Duo CPU T7100 @ 1.80GHz stepping : 13 cpu MHz : 800.000 cache size : 2048 KB physical id : 0 siblings : 2 core id : 1 cpu cores : 2 apicid : 1 initial apicid : 1 fpu : yes fpu_exception : yes cpuid level : 10 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx lm constant_tsc arch_perfmon pebs bts rep_good aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm lahf_lm ida dts tpr_shadow vnmi flexpriority bogomips : 3591.39 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: [root@server1 ~]# EDIT New Info requested by shakalandy [root@localhost ~]# cat /proc/meminfo MemTotal: 2044804 kB MemFree: 761464 kB Buffers: 68868 kB Cached: 369708 kB SwapCached: 0 kB Active: 881080 kB Inactive: 246016 kB Active(anon): 688312 kB Inactive(anon): 4416 kB Active(file): 192768 kB Inactive(file): 241600 kB Unevictable: 0 kB Mlocked: 0 kB SwapTotal: 4095992 kB SwapFree: 4095992 kB Dirty: 0 kB Writeback: 0 kB AnonPages: 688428 kB Mapped: 65156 kB Shmem: 4216 kB Slab: 92428 kB SReclaimable: 31260 kB SUnreclaim: 61168 kB KernelStack: 2392 kB PageTables: 28356 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB CommitLimit: 5118392 kB Committed_AS: 1530212 kB VmallocTotal: 34359738367 kB VmallocUsed: 343604 kB VmallocChunk: 34359372920 kB HardwareCorrupted: 0 kB AnonHugePages: 520192 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 HugePages_Surp: 0 Hugepagesize: 2048 kB DirectMap4k: 8556 kB DirectMap2M: 2078720 kB [root@localhost ~]# ps aux | grep mysql root 2227 0.0 0.0 108332 1504 ? S 07:36 0:00 /bin/sh /usr/bin/mysqld_safe --datadir=/var/lib/mysql --pid-file=/var/lib/mysql/localhost.badobe.com.pid mysql 2319 0.1 24.5 1470068 501360 ? Sl 07:36 0:57 /usr/sbin/mysqld --basedir=/usr --datadir=/var/lib/mysql --plugin-dir=/usr/lib64/mysql/plugin --user=mysql --log-error=/var/lib/mysql/localhost.badobe.com.err --pid-file=/var/lib/mysql/localhost.badobe.com.pid root 3579 0.0 0.1 201840 3028 pts/0 S+ 07:40 0:00 mysql -u root -p root 13887 0.0 0.1 201840 3036 pts/3 S+ 18:08 0:00 mysql -uroot -px xxxxxxxxxx root 14449 0.0 0.0 103248 840 pts/2 S+ 18:16 0:00 grep mysql [root@localhost ~]# ps aux | grep mysql root 2227 0.0 0.0 108332 1504 ? S 07:36 0:00 /bin/sh /usr/bin/mysqld_safe --datadir=/var/lib/mysql --pid-file=/var/lib/mysql/localhost.badobe.com.pid mysql 2319 0.1 24.5 1470068 501356 ? Sl 07:36 0:57 /usr/sbin/mysqld --basedir=/usr --datadir=/var/lib/mysql --plugin-dir=/usr/lib64/mysql/plugin --user=mysql --log-error=/var/lib/mysql/localhost.badobe.com.err --pid-file=/var/lib/mysql/localhost.badobe.com.pid root 3579 0.0 0.1 201840 3028 pts/0 S+ 07:40 0:00 mysql -u root -p root 13887 0.0 0.1 201840 3048 pts/3 S+ 18:08 0:00 mysql -uroot -px xxxxxxxxxx root 14470 0.0 0.0 103248 840 pts/2 S+ 18:16 0:00 grep mysql [root@localhost ~]# vmstat 1 procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu----- r b swpd free buff cache si so bi bo in cs us sy id wa st 0 0 0 742172 76376 371064 0 0 6 6 78 202 2 1 97 1 0 0 0 0 742164 76380 371060 0 0 0 16 191 467 2 1 93 5 0 0 0 0 742164 76380 371064 0 0 0 0 148 388 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 159 418 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 145 380 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 166 429 2 1 97 0 0 1 0 0 742164 76380 371064 0 0 0 0 148 373 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 149 382 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 168 408 2 0 97 0 0 0 0 0 742164 76380 371064 0 0 0 0 165 394 2 1 98 0 0 0 0 0 742164 76380 371064 0 0 0 0 159 354 2 1 98 0 0 0 0 0 742164 76388 371060 0 0 0 16 180 447 2 0 91 6 0 0 0 0 742164 76388 371064 0 0 0 0 143 344 2 1 98 0 0 0 1 0 742784 76416 370044 0 0 28 580 360 678 3 1 74 23 0 1 0 0 744768 76496 367772 0 0 40 1036 437 865 3 1 53 43 0 0 1 0 747248 76596 365412 0 0 48 1224 561 923 3 2 53 43 0 0 1 0 749232 76696 363092 0 0 32 1132 512 883 3 2 52 44 0 0 1 0 751340 76772 361020 0 0 32 1008 472 872 2 1 52 45 0 0 1 0 753448 76840 358540 0 0 36 1088 512 860 2 1 51 46 0 0 1 0 755060 76936 357636 0 0 28 1012 481 922 2 2 52 45 0 0 1 0 755060 77064 357988 0 0 12 896 444 902 2 1 53 45 0 0 1 0 754688 77148 358448 0 0 16 1096 506 1007 1 1 56 42 0 0 2 0 754192 77268 358932 0 0 12 1060 481 957 1 2 53 44 0 0 1 0 753696 77380 359392 0 0 12 1052 512 1025 2 1 55 42 0 0 1 0 751028 77480 359828 0 0 8 984 423 909 2 2 52 45 0 0 1 0 750524 77620 360200 0 0 8 788 367 869 1 2 54 44 0 0 1 0 749904 77700 360664 0 0 8 928 439 924 2 2 55 43 0 0 1 0 749408 77796 361084 0 0 12 976 468 967 1 1 56 43 0 0 1 0 748788 77896 361464 0 0 12 992 453 944 1 2 54 43 0 1 1 0 748416 77992 361996 0 0 12 784 392 868 2 1 52 46 0 0 1 0 747920 78092 362336 0 0 4 896 382 874 1 1 52 46 0 0 1 0 745252 78172 362780 0 0 12 1040 444 923 1 1 56 42 0 0 1 0 744764 78288 363220 0 0 8 1024 448 934 2 1 55 43 0 0 1 0 744144 78408 363668 0 0 8 1000 461 982 2 1 53 44 0 0 1 0 743648 78488 364148 0 0 8 872 443 888 2 1 54 43 0 0 1 0 743152 78548 364468 0 0 16 1020 511 995 2 1 55 43 0 0 1 0 742656 78632 365024 0 0 12 928 431 913 1 2 53 44 0 0 1 0 742160 78728 365468 0 0 12 996 470 955 2 2 54 44 0 1 1 0 739492 78840 365896 0 0 8 988 447 939 1 2 52 46 0 0 1 0 738872 78996 366352 0 0 12 972 442 928 1 1 55 44 0 1 1 0 738244 79148 366812 0 0 8 948 549 1126 2 2 54 43 0 0 1 0 737624 79312 367188 0 0 12 996 456 953 2 2 54 43 0 0 1 0 736880 79456 367660 0 0 12 960 444 918 1 1 53 46 0 0 1 0 736260 79584 368124 0 0 8 884 414 921 1 1 54 44 0 0 1 0 735648 79716 368488 0 0 12 976 450 955 2 1 56 41 0 0 1 0 733104 79840 368988 0 0 12 932 453 918 1 2 55 43 0 0 1 0 732608 79996 369356 0 0 16 916 444 889 1 2 54 43 0 1 1 0 731476 80128 369800 0 0 16 852 514 978 2 2 54 43 0 0 1 0 731244 80252 370200 0 0 8 904 398 870 2 1 55 43 0 1 1 0 730624 80384 370612 0 0 12 1032 447 977 1 2 57 41 0 0 1 0 730004 80524 371096 0 0 12 984 469 941 2 2 52 45 0 0 1 0 729508 80636 371544 0 0 12 928 438 922 2 1 52 46 0 0 1 0 728888 80756 371948 0 0 16 972 439 943 2 1 55 43 0 0 1 0 726468 80900 372272 0 0 8 960 545 1024 2 1 54 43 0 1 1 0 726344 81024 372272 0 0 8 464 490 1057 1 2 53 44 0 0 1 0 726096 81148 372276 0 0 4 328 441 1063 2 1 53 45 0 1 1 0 726096 81256 372292 0 0 0 296 387 975 1 1 53 45 0 0 1 0 725848 81380 372284 0 0 4 332 425 1034 2 1 54 44 0 1 1 0 725848 81496 372300 0 0 4 308 386 992 2 1 54 43 0 0 1 0 725600 81616 372296 0 0 4 328 404 1060 1 1 54 44 0 procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu----- r b swpd free buff cache si so bi bo in cs us sy id wa st 0 1 0 725600 81732 372296 0 0 4 328 439 1011 1 1 53 44 0 0 1 0 725476 81848 372308 0 0 0 316 441 1023 2 2 52 46 0 1 1 0 725352 81972 372300 0 0 4 344 451 1021 1 1 55 43 0 2 1 0 725228 82088 372320 0 0 0 328 427 1058 1 1 54 44 0 1 1 0 724980 82220 372300 0 0 4 336 419 999 2 1 54 44 0 1 1 0 724980 82328 372320 0 0 4 320 430 1019 1 1 54 44 0 1 1 0 724732 82436 372328 0 0 0 388 363 942 2 1 54 44 0 1 1 0 724608 82560 372312 0 0 4 308 419 993 1 2 54 44 0 1 0 0 724360 82684 372320 0 0 0 304 421 1028 2 1 55 42 0 1 0 0 724360 82684 372388 0 0 0 0 158 416 2 1 98 0 0 1 1 0 724236 82720 372360 0 0 0 6464 243 855 3 2 84 12 0 1 0 0 724112 82748 372360 0 0 0 5356 266 895 3 1 84 12 0 2 1 0 724112 82764 372380 0 0 0 3052 221 511 2 2 93 4 0 1 0 0 724112 82796 372372 0 0 0 4548 325 1067 2 2 81 16 0 1 0 0 724112 82816 372368 0 0 0 3240 259 829 3 1 90 6 0 1 0 0 724112 82836 372380 0 0 0 3260 309 822 3 2 88 8 0 1 1 0 724112 82876 372364 0 0 0 4680 326 978 3 1 77 19 0 1 0 0 724112 82884 372380 0 0 0 512 207 508 2 1 95 2 0 1 0 0 724112 82884 372388 0 0 0 0 138 361 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 158 397 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 146 395 2 1 98 0 0 2 0 0 724112 82884 372388 0 0 0 0 160 395 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 163 382 1 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 176 422 2 1 98 0 0 1 0 0 724112 82884 372388 0 0 0 0 134 351 2 1 98 0 0 0 0 0 724112 82884 372388 0 0 0 0 190 429 2 1 97 0 0 0 0 0 724104 82884 372392 0 0 0 0 139 358 2 1 98 0 0 0 0 0 724848 82884 372392 0 0 0 4 211 432 2 1 97 0 0 1 0 0 724980 82884 372392 0 0 0 0 166 370 2 1 98 0 0 0 0 0 724980 82884 372392 0 0 0 0 164 397 2 1 98 0 0 ^C [root@localhost ~]# Database size mysql> SELECT table_schema "Data Base Name", sum( data_length + index_length ) / 1024 / 1024 "Data Base Size in MB", sum( data_free )/ 1024 / 1024 "Free Space in MB" FROM information_schema.TABLES GROUP BY table_schema; +--------------------+----------------------+------------------+ | Data Base Name | Data Base Size in MB | Free Space in MB | +--------------------+----------------------+------------------+ | bidjunction | 4.68750000 | 0.00000000 | | information_schema | 0.00976563 | 0.00000000 | | mysql | 0.63899899 | 0.00105286 | +--------------------+----------------------+------------------+ 3 rows in set (0.01 sec) mysql> Before Query mysql> SHOW SESSION STATUS like '%Tmp%'; +-------------------------+-------+ | Variable_name | Value | +-------------------------+-------+ | Created_tmp_disk_tables | 0 | | Created_tmp_files | 6 | | Created_tmp_tables | 0 | +-------------------------+-------+ 3 rows in set (0.00 sec) mysql> After Query mysql> SHOW SESSION STATUS like '%Tmp%'; +-------------------------+-------+ | Variable_name | Value | +-------------------------+-------+ | Created_tmp_disk_tables | 0 | | Created_tmp_files | 6 | | Created_tmp_tables | 2 | +-------------------------+-------+ 3 rows in set (0.00 sec) mysql>

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• Kernel oops on Linux running in VirtualBox breaks some IO-related functionality on the server

  - by Kristoffer E

  We are having problems with CentOS release 6.3 running in VirtualBox on Windows 7 machines. The symptoms are the following: Everything works as normal for several hours, even days. Then something happens which breaks the system. What we still can do after this something happens: Access the web server Use existing SSH sessions to run top and free What does not work: Starting new SSH sessions (hangs after username and password is entered) Running ls in existing SSH sessions (hangs) SSI includes from our web servers that fetch data from remote machines probably more What we see on the server when this something happens is the following: Load average go from basically nothing to around 3 CPU usage is still low (5%) Disk activity is low (running iostat) Plenty of memory available Plenty of disk space available In /var/log/messages we get the following: Jun 14 01:10:48 devvm kernel: e1000 0000:00:03.0: eth0: Detected Tx Unit Hang Jun 14 01:10:48 devvm kernel: Tx Queue <0> Jun 14 01:10:48 devvm kernel: TDH <2e> Jun 14 01:10:48 devvm kernel: TDT <30> Jun 14 01:10:48 devvm kernel: next_to_use <30> Jun 14 01:10:48 devvm kernel: next_to_clean <2e> Jun 14 01:10:48 devvm kernel: buffer_info[next_to_clean] Jun 14 01:10:48 devvm kernel: time_stamp <1038284db> Jun 14 01:10:48 devvm kernel: next_to_watch <2f> Jun 14 01:10:48 devvm kernel: jiffies <103828b42> Jun 14 01:10:48 devvm kernel: next_to_watch.status <0> Jun 14 01:10:50 devvm kernel: e1000 0000:00:03.0: eth0: Detected Tx Unit Hang Jun 14 01:10:50 devvm kernel: Tx Queue <0> Jun 14 01:10:50 devvm kernel: TDH <2e> Jun 14 01:10:50 devvm kernel: TDT <30> Jun 14 01:10:50 devvm kernel: next_to_use <30> Jun 14 01:10:50 devvm kernel: next_to_clean <2e> Jun 14 01:10:50 devvm kernel: buffer_info[next_to_clean] Jun 14 01:10:50 devvm kernel: time_stamp <1038284db> Jun 14 01:10:50 devvm kernel: next_to_watch <2f> Jun 14 01:10:50 devvm kernel: jiffies <103829312> Jun 14 01:10:50 devvm kernel: next_to_watch.status <0> Jun 14 01:10:52 devvm kernel: ------------[ cut here ]------------ Jun 14 01:10:52 devvm kernel: WARNING: at net/sched/sch_generic.c:261 dev_watchdog+0x26d/0x280() (Not tainted) Jun 14 01:10:52 devvm kernel: Hardware name: VirtualBox Jun 14 01:10:52 devvm kernel: NETDEV WATCHDOG: eth0 (e1000): transmit queue 0 timed out Jun 14 01:10:52 devvm kernel: Modules linked in: vboxsf(U) ipv6 ppdev parport_pc parport microcode sg vboxguest(U) i2c_piix4 i2c_core e1000 snd_intel8x0 snd_ac97_codec ac97_bus snd_seq snd_seq_device snd_pcm snd_timer snd soundcore snd_page_alloc pcnet32 mii ext4 mbcache jbd2 sd_mod crc_t10dif ahci dm_mirror dm_region_hash dm_log dm_mod [last unloaded: scsi_wait_scan] Jun 14 01:10:52 devvm kernel: Pid: 0, comm: swapper Not tainted 2.6.32-279.el6.x86_64 #1 Jun 14 01:10:52 devvm kernel: Call Trace: Jun 14 01:10:52 devvm kernel: <IRQ> [<ffffffff8106b747>] ? warn_slowpath_common+0x87/0xc0 Jun 14 01:10:52 devvm kernel: [<ffffffff8106b836>] ? warn_slowpath_fmt+0x46/0x50 Jun 14 01:10:52 devvm kernel: [<ffffffff814595fd>] ? dev_watchdog+0x26d/0x280 Jun 14 01:10:52 devvm kernel: [<ffffffff81099138>] ? sched_clock_cpu+0xb8/0x110 Jun 14 01:10:52 devvm kernel: [<ffffffff81459390>] ? dev_watchdog+0x0/0x280 Jun 14 01:10:52 devvm kernel: [<ffffffff8107e897>] ? run_timer_softirq+0x197/0x340 Jun 14 01:10:52 devvm kernel: [<ffffffff810a21c0>] ? tick_sched_timer+0x0/0xc0 Jun 14 01:10:52 devvm kernel: [<ffffffff8102b40d>] ? lapic_next_event+0x1d/0x30 Jun 14 01:10:52 devvm kernel: [<ffffffff81073ec1>] ? __do_softirq+0xc1/0x1e0 Jun 14 01:10:52 devvm kernel: [<ffffffff81096c50>] ? hrtimer_interrupt+0x140/0x250 Jun 14 01:10:52 devvm kernel: [<ffffffff8100c24c>] ? call_softirq+0x1c/0x30 Jun 14 01:10:52 devvm kernel: [<ffffffff8100de85>] ? do_softirq+0x65/0xa0 Jun 14 01:10:52 devvm kernel: [<ffffffff81073ca5>] ? irq_exit+0x85/0x90 Jun 14 01:10:52 devvm kernel: [<ffffffff81505be0>] ? smp_apic_timer_interrupt+0x70/0x9b Jun 14 01:10:52 devvm kernel: [<ffffffff8100bc13>] ? apic_timer_interrupt+0x13/0x20 Jun 14 01:10:52 devvm kernel: <EOI> [<ffffffff810387cb>] ? native_safe_halt+0xb/0x10 Jun 14 01:10:52 devvm kernel: [<ffffffff810149cd>] ? default_idle+0x4d/0xb0 Jun 14 01:10:52 devvm kernel: [<ffffffff81009e06>] ? cpu_idle+0xb6/0x110 Jun 14 01:10:52 devvm kernel: [<ffffffff814e433a>] ? rest_init+0x7a/0x80 Jun 14 01:10:52 devvm kernel: [<ffffffff81c21f7b>] ? start_kernel+0x424/0x430 Jun 14 01:10:52 devvm kernel: [<ffffffff81c2133a>] ? x86_64_start_reservations+0x125/0x129 Jun 14 01:10:52 devvm kernel: [<ffffffff81c21438>] ? x86_64_start_kernel+0xfa/0x109 Jun 14 01:10:52 devvm kernel: ---[ end trace 2c7bb984812cf120 ]--- Jun 14 01:10:52 devvm kernel: e1000 0000:00:03.0: eth0: Reset adapter Jun 14 01:10:53 devvm abrtd: Directory 'oops-2013-06-14-01:10:53-1537-0' creation detected Jun 14 01:10:53 devvm abrt-dump-oops: Reported 1 kernel oopses to Abrt Jun 14 01:10:53 devvm abrtd: Can't open file '/var/spool/abrt/oops-2013-06-14-01:10:53-1537-0/uid': No such file or directory Jun 14 01:10:55 devvm kernel: Bridge firewalling registered After this we see for a while, every two minutes: Jun 14 01:14:22 devvm kernel: INFO: task events/0:19 blocked for more than 120 seconds. Jun 14 01:14:22 devvm kernel: "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. Jun 14 01:14:22 devvm kernel: events/0 D 0000000000000000 0 19 2 0x00000000 Jun 14 01:14:22 devvm kernel: ffff880116c4fb90 0000000000000046 00000000ffffffff 0000000000000008 Jun 14 01:14:22 devvm kernel: 0000000000016680 0000000000016680 ffff880028210400 0000000000016680 Jun 14 01:14:22 devvm kernel: ffff880116c4daf8 ffff880116c4ffd8 000000000000fb88 ffff880116c4daf8 Jun 14 01:14:22 devvm kernel: Call Trace: Jun 14 01:14:22 devvm kernel: [<ffffffff8105b483>] ? perf_event_task_sched_out+0x33/0x80 Jun 14 01:14:22 devvm kernel: [<ffffffff814fe6a5>] schedule_timeout+0x215/0x2e0 Jun 14 01:14:22 devvm kernel: [<ffffffff8100975d>] ? __switch_to+0x13d/0x320 Jun 14 01:14:22 devvm kernel: [<ffffffff814fe323>] wait_for_common+0x123/0x180 Jun 14 01:14:22 devvm kernel: [<ffffffff81060250>] ? default_wake_function+0x0/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff814fe43d>] wait_for_completion+0x1d/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff8108d093>] __cancel_work_timer+0x1b3/0x1e0 Jun 14 01:14:22 devvm kernel: [<ffffffff8108cbe0>] ? wq_barrier_func+0x0/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff8108d0f0>] cancel_work_sync+0x10/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffffa01c5ca5>] e1000_down_and_stop+0x25/0x50 [e1000] Jun 14 01:14:22 devvm kernel: [<ffffffffa01cb695>] e1000_down+0x155/0x200 [e1000] Jun 14 01:14:22 devvm kernel: [<ffffffffa01cbcb0>] ? e1000_reset_task+0x0/0xe0 [e1000] Jun 14 01:14:22 devvm kernel: [<ffffffffa01cbd1e>] e1000_reset_task+0x6e/0xe0 [e1000] Jun 14 01:14:22 devvm kernel: [<ffffffff8108c760>] worker_thread+0x170/0x2a0 Jun 14 01:14:22 devvm kernel: [<ffffffff810920d0>] ? autoremove_wake_function+0x0/0x40 Jun 14 01:14:22 devvm kernel: [<ffffffff8108c5f0>] ? worker_thread+0x0/0x2a0 Jun 14 01:14:22 devvm kernel: [<ffffffff81091d66>] kthread+0x96/0xa0 Jun 14 01:14:22 devvm kernel: [<ffffffff8100c14a>] child_rip+0xa/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff81091cd0>] ? kthread+0x0/0xa0 Jun 14 01:14:22 devvm kernel: [<ffffffff8100c140>] ? child_rip+0x0/0x20 Jun 14 01:14:22 devvm kernel: INFO: task parted:8069 blocked for more than 120 seconds. Jun 14 01:14:22 devvm kernel: "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. Jun 14 01:14:22 devvm kernel: parted D 0000000000000003 0 8069 7994 0x00000080 Jun 14 01:14:22 devvm kernel: ffff8800908b3bb8 0000000000000082 0000000000000000 ffff88010ab50080 Jun 14 01:14:22 devvm kernel: ffff880116c7d500 0000000000000001 0000000000000000 0000000000000000 Jun 14 01:14:22 devvm kernel: ffff88010ab50638 ffff8800908b3fd8 000000000000fb88 ffff88010ab50638 Jun 14 01:14:22 devvm kernel: Call Trace: Jun 14 01:14:22 devvm kernel: [<ffffffff814fe6a5>] schedule_timeout+0x215/0x2e0 Jun 14 01:14:22 devvm kernel: [<ffffffff814fe323>] wait_for_common+0x123/0x180 Jun 14 01:14:22 devvm kernel: [<ffffffff81060250>] ? default_wake_function+0x0/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff8112b6d0>] ? lru_add_drain_per_cpu+0x0/0x10 Jun 14 01:14:22 devvm kernel: [<ffffffff814fe43d>] wait_for_completion+0x1d/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff8108d177>] flush_work+0x77/0xc0 Jun 14 01:14:22 devvm kernel: [<ffffffff8108cbe0>] ? wq_barrier_func+0x0/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff8108d2f3>] schedule_on_each_cpu+0x133/0x180 Jun 14 01:14:22 devvm kernel: [<ffffffff811ad440>] ? invalidate_bh_lru+0x0/0x50 Jun 14 01:14:22 devvm kernel: [<ffffffff8112ae35>] lru_add_drain_all+0x15/0x20 Jun 14 01:14:22 devvm kernel: [<ffffffff811adf6a>] invalidate_bdev+0x2a/0x50 Jun 14 01:14:22 devvm kernel: [<ffffffff8125e9a4>] blkdev_ioctl+0x3b4/0x6e0 Jun 14 01:14:22 devvm kernel: [<ffffffff811b381c>] block_ioctl+0x3c/0x40 Jun 14 01:14:22 devvm kernel: [<ffffffff8118dec2>] vfs_ioctl+0x22/0xa0 Jun 14 01:14:22 devvm kernel: [<ffffffff8118e064>] do_vfs_ioctl+0x84/0x580 Jun 14 01:14:22 devvm kernel: [<ffffffff8118e5e1>] sys_ioctl+0x81/0xa0 Jun 14 01:14:22 devvm kernel: [<ffffffff8100b0f2>] system_call_fastpath+0x16/0x1b In /var/spool/abrt/oops-2013-06-14-01:10:53-1537-0 we can see the following information: In backtrace: WARNING: at net/sched/sch_generic.c:261 dev_watchdog+0x26d/0x280() (Not tainted) Hardware name: VirtualBox NETDEV WATCHDOG: eth0 (e1000): transmit queue 0 timed out Modules linked in: vboxsf(U) ipv6 ppdev parport_pc parport microcode sg vboxguest(U) i2c_piix4 i2c_core e1000 snd_intel8x0 snd_ac97_codec ac97_bus snd_seq snd_seq_device snd_pcm snd_timer snd soundcore snd_page_alloc pcnet32 mii ext4 mbcache jbd2 sd_mod crc_t10dif ahci dm_mirror dm_region_hash dm_log dm_mod [last unloaded: scsi_wait_scan] Pid: 0, comm: swapper Not tainted 2.6.32-279.el6.x86_64 #1 Call Trace: <IRQ> [<ffffffff8106b747>] ? warn_slowpath_common+0x87/0xc0 [<ffffffff8106b836>] ? warn_slowpath_fmt+0x46/0x50 [<ffffffff814595fd>] ? dev_watchdog+0x26d/0x280 [<ffffffff81099138>] ? sched_clock_cpu+0xb8/0x110 [<ffffffff81459390>] ? dev_watchdog+0x0/0x280 [<ffffffff8107e897>] ? run_timer_softirq+0x197/0x340 [<ffffffff810a21c0>] ? tick_sched_timer+0x0/0xc0 [<ffffffff8102b40d>] ? lapic_next_event+0x1d/0x30 [<ffffffff81073ec1>] ? __do_softirq+0xc1/0x1e0 [<ffffffff81096c50>] ? hrtimer_interrupt+0x140/0x250 [<ffffffff8100c24c>] ? call_softirq+0x1c/0x30 [<ffffffff8100de85>] ? do_softirq+0x65/0xa0 [<ffffffff81073ca5>] ? irq_exit+0x85/0x90 [<ffffffff81505be0>] ? smp_apic_timer_interrupt+0x70/0x9b [<ffffffff8100bc13>] ? apic_timer_interrupt+0x13/0x20 <EOI> [<ffffffff810387cb>] ? native_safe_halt+0xb/0x10 [<ffffffff810149cd>] ? default_idle+0x4d/0xb0 [<ffffffff81009e06>] ? cpu_idle+0xb6/0x110 [<ffffffff814e433a>] ? rest_init+0x7a/0x80 [<ffffffff81c21f7b>] ? start_kernel+0x424/0x430 [<ffffffff81c2133a>] ? x86_64_start_reservations+0x125/0x129 [<ffffffff81c21438>] ? x86_64_start_kernel+0xfa/0x109 In cmdline: ro root=/dev/mapper/vg_01-lv_root rd_NO_LUKS LANG=en_US.UTF-8 KEYBOARDTYPE=pc KEYTABLE=sv-latin1 rd_NO_MD SYSFONT=latarcyrheb-sun16 rd_LVM_LV=vg_01/lv_root crashkernel=129M@0M rhgb quiet rd_LVM_LV=vg_01/lv_swap rd_NO_DM rhgb quie Additional information: # uname -a Linux devvm 2.6.32-279.el6.x86_64 #1 SMP Fri Jun 22 12:19:21 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux # cat /etc/redhat-release CentOS release 6.3 (Final) VirtualBox version 4.2.6. Any insight in how we can proceed with troubleshooting this is appreciated. If you need more information, just let me know.

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• How do I fix a corrupted harddrive after failed upgrade?

  - by Nil

  The problem originated when I was trying to fix this problem. Things went horribly, horribly wrong and I ended up with a new problem altogether. The last thing I did was run sudo apt-get install and that caused my system to freeze. I restarted my computer and it would not boot from the harddrive. I ran a copy of Ubuntu 12.10 from a flashdrive that I had and ran gparted to see if my partitions were all there. It returned this message: Invalid partition table on /dev/sda -- wrong signature 5208. The drive appeared as a 2TiB unallocated drive with an error. The drive had 4 partitions before (plus random unallocated space). There was a fat32 partition, an ext4 partition which contained ubuntu 13.04/13.10 (I don't even know which one at this point), an extended partition which contained a swap partition for my ubuntu partition (I was meaning to move that ubuntu partition into the extended partition, never got around to it), and another partition (I don't remember how I formatted it). I should also mention this is a 1TB harddrive. So in short, I have a corrupted partition table on my primary harddrive from which I boot from, how can I fix this? I tried mounting the drive with sudo mount /dev/sda1 /media/ubuntu then I changed my directory to said folder and tried to list files and this monstrosity happened: $ ls ls: cannot access ??w?j^?.: Input/output error ls: cannot access ??(? ?x?.|: Input/output error ls: cannot access 6W_@?)?._??: Input/output error ls: cannot access HB0v???.A}?: Input/output error ls: cannot access ???.?X: Input/output error ls: cannot access t)?.+?l: Input/output error ls: cannot access ?h@ ?.@ : Input/output error ls: cannot access >? @??.???: Input/output error ls: cannot access m???.??: Input/output error ls: cannot access @ if??a?: Input/output error ls: cannot access ?M!vN$?.??n: Input/output error ls: cannot access ?o? ??.Bm`: Input/output error ls: cannot access ?:I??? M. : Input/output error ls: cannot access W??.??: Input/output error ls: cannot access ?: Input/output error ls: cannot access ?W?s??: Input/output error ls: cannot access ?v?k?.???: Input/output error ls: cannot access 5?$<N??: Input/output error .x????.??i: Input/output error ls: cannot access je????.j?1: Input/output error XjD?.???: Input/output error ls: cannot access W??n???.?: Input/output error ls: cannot access ?^x.$"?: Input/output error ls: cannot access !??*!??j.??: Input/output error ls: cannot access '-??k?^?.???: Input/output error ls: cannot access b?w?w?b.\??: Input/output error ls: cannot access o????"z.??B: Input/output error ls: cannot access ??b?h.?3-: Input/output error ls: cannot access ??.$7: Input/output error ls: cannot access )??K.bk: Input/output error ls: cannot access s??z?.?(?: Input/output error ls: cannot access ?F@?0?.@?: Input/output error .?D: Input/output error .??: Input/output error ls: cannot access?????. @: Input/output error ls: cannot access ?/?? ?.??: No such file or directory ls: cannot access rk?p4q(?.?k: Input/output error This looks promising. This is the output of fdisk -l $ sudo fdisk -l /dev/sda Warning: ignoring extra data in partition table 5 Warning: ignoring extra data in partition table 5 Warning: ignoring extra data in partition table 5 Warning: invalid flag 0x5208 of partition table 5 will be corrected by w(rite) Disk /dev/sda: 2199.0 GB, 2199023132672 bytes 255 heads, 63 sectors/track, 267349 cylinders, total 4294967056 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x44fdfe06 Device Boot Start End Blocks Id System /dev/sda1 113305600 894715903 390705152 c W95 FAT32 (LBA) /dev/sda2 894715904 1489307647 297295872 83 Linux /dev/sda3 1489309694 1497307135 3998721 5 Extended /dev/sda4 1497309184 1953523711 228107264 7 HPFS/NTFS/exFAT /dev/sda5 ? 3013257822 3688738171 337740175 aa Unknown

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• How to check if a cdrom is in the tray remotely (via ssh)?

  - by adempewolff

  I have a server running Ubuntu 10.04 (it's on the other side of the world and I haven't built up the wherewithal to upgrade it remotely yet) and I have been told that there is a CD in one of it's two CD drives. I want to rip an image of the cd and then download it to my local computer (I don't need help with either of these steps). However, I cannot seem to confirm whether or not there actually is a CD in the drive as I was told. It did not automatically mount anywhere (which I'm thinking might just be a result of it being a headless server not running X, nautilus, or any of the other nice user friendly things). There are two CD drives connected via SCSI: austin@austinvpn:/proc/scsi$ cat /proc/scsi/scsi Attached devices: Host: scsi0 Channel: 00 Id: 00 Lun: 00 Vendor: ATA Model: WDC WD400EB-75CP Rev: 06.0 Type: Direct-Access ANSI SCSI revision: 05 Host: scsi1 Channel: 00 Id: 00 Lun: 00 Vendor: Lite-On Model: LTN486S 48x Max Rev: YDS6 Type: CD-ROM ANSI SCSI revision: 05 Host: scsi1 Channel: 00 Id: 01 Lun: 00 Vendor: SAMSUNG Model: CD-R/RW SW-248F Rev: R602 Type: CD-ROM ANSI SCSI revision: 05 However when I try mounting either of these devices (and every other device that could possibly be the cd-drive), it says no medium found: austin@austinvpn:/proc/scsi$ sudo mount -t iso9660 /dev/scd1 /cdrom mount: no medium found on /dev/sr1 austin@austinvpn:/proc/scsi$ sudo mount -t iso9660 /dev/scd0 /cdrom mount: no medium found on /dev/sr0 austin@austinvpn:/proc/scsi$ sudo mount -t iso9660 /dev/cdrom /cdrom mount: no medium found on /dev/sr1 austin@austinvpn:/proc/scsi$ sudo mount -t iso9660 /dev/cdrom1 /cdrom mount: no medium found on /dev/sr0 austin@austinvpn:/proc/scsi$ sudo mount -t iso9660 /dev/cdrw /cdrom mount: no medium found on /dev/sr1 Here are the contents of my /dev folder: austin@austinvpn:/proc/scsi$ ls /dev agpgart loop6 ram6 tty10 tty38 tty8 austinvpn loop7 ram7 tty11 tty39 tty9 block lp0 ram8 tty12 tty4 ttyS0 bsg mapper ram9 tty13 tty40 ttyS1 btrfs-control mcelog random tty14 tty41 ttyS2 bus mem rfkill tty15 tty42 ttyS3 cdrom net root tty16 tty43 urandom cdrom1 network_latency rtc tty17 tty44 usbmon0 cdrw network_throughput rtc0 tty18 tty45 usbmon1 char null scd0 tty19 tty46 usbmon2 console oldmem scd1 tty2 tty47 usbmon3 core parport0 sda tty20 tty48 usbmon4 cpu_dma_latency pktcdvd sda1 tty21 tty49 vcs disk port sda2 tty22 tty5 vcs1 dri ppp sda5 tty23 tty50 vcs2 ecryptfs psaux sg0 tty24 tty51 vcs3 fb0 ptmx sg1 tty25 tty52 vcs4 fd pts sg2 tty26 tty53 vcs5 full ram0 shm tty27 tty54 vcs6 fuse ram1 snapshot tty28 tty55 vcs7 hpet ram10 snd tty29 tty56 vcsa input ram11 sndstat tty3 tty57 vcsa1 kmsg ram12 sr0 tty30 tty58 vcsa2 log ram13 sr1 tty31 tty59 vcsa3 loop0 ram14 stderr tty32 tty6 vcsa4 loop1 ram15 stdin tty33 tty60 vcsa5 loop2 ram2 stdout tty34 tty61 vcsa6 loop3 ram3 tty tty35 tty62 vcsa7 loop4 ram4 tty0 tty36 tty63 vga_arbiter loop5 ram5 tty1 tty37 tty7 zero And here is my fstab file: austin@austinvpn:/proc/scsi$ cat /etc/fstab # /etc/fstab: static file system information. # # Use 'blkid -o value -s UUID' to print the universally unique identifier # for a device; this may be used with UUID= as a more robust way to name # devices that works even if disks are added and removed. See fstab(5). # # <file system> <mount point> <type> <options> <dump> <pass> proc /proc proc nodev,noexec,nosuid 0 0 /dev/mapper/austinvpn-root / ext4 errors=remount-ro 0 1 # /boot was on /dev/sda1 during installation UUID=ed5520ae-c690-4ce6-881e-3598f299be06 /boot ext2 defaults 0 2 /dev/mapper/austinvpn-swap_1 none swap sw 0 0 Am I missing something/doing something wrong, or is there just no CD in the drive or is the drive possibly broken? Is there any nice command to list devices with mountable media? Thanks in advance for any help!

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• Ubuntu 12.04 Bootloader failed to install

  - by Chris

  Sorry about the excessively long question, but I figured giving more information would be better. I recently bought a new desktop for myself, running Windows 7. It has two hard drives, and I wanted to install Ubuntu on a small partition on the second hard drive. I created 25GB "free space" in Windows and ran a LiveCD install. I wanted to select the install options myself but accidentally selected "Install alongside Windows 7," but it seemed to pick up the free space and installed itself there as I wanted it to. However, I was told that the bootloader installation had failed. I chose to "Cancel installation," leaving my computer unable to boot. I wiped my computer and reinstalled Windows. After that, I tried installing Ubuntu through Windows using WUBI, once using files from my LiveCD and once downloading everything again. Both times the install succeeded, but both times when I restarted and tried to load Ubuntu, it gave me an error - wubildr.mbr was corrupt or missing. I checked in Windows - it was indeed present on the C:\ drive. I went back to the LiveCD installation, this time going the custom options route. I assigned 16GB to an Ext4 journaling file system and 10GB to a swap file. I got the same bootloader error as before. Being prompted to select a different partition to install the bootloader to, I first tried the partition Ubuntu was installed on. A window came up saying that the install had succeeded, but a second window gave me the same error and choices as before. I went through every single option it gave me, including the Windows partition and the hard drives themselves (dev/sda, dev/sdb). Same result. I then chose to not install a bootloader. Windows still works fine, and I assume Ubuntu has installed but is unbootable. Knowing that my computer could potentially brick itself again - and, this time around, with a lot of data to lose and hassle to go through if I mess it up - I really don't want to do anything without some advice. So I'll ask this: a) Why did the bootloader fail to install? Can I fix the error and install Ubuntu fresh? b) Is there any way to get around the error, install the bootloader, and point it towards an existing installation of Ubuntu? c) Is there a quicker and easier solution I might have missed? EDIT: Thanks for the tip, AthloX. After testing the liveCD in Virtualbox with no installation problems, I looked around for some alternate bootloaders but had no success. I attempted another install, which installed the bootloader and Ubuntu just fine but bricked Windows 7. I wiped both hard disks clean, including some "System Reserved" partitions I hadn't noticed before, before re-installing Windows 7 on one hard drive and immediately afterwards installing Ubuntu on the other. Now the computer boots into Windows, but I can pop into the BIOS at startup to boot into Ubunbtu via it's bootloader, and I'm guessing it'll only take a bit of poking at the BIOS to swap the load order. Many thanks!

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• Must go through Windows Boot Loader to get to Grub

  - by Zach

  I just installed a fresh copy of Precise alongside Windows 7. I have to separate 750GB hard drives; /dev/sda holds the Windows partitions and /dev/sdb holds the Ubuntu partitions. Other than that, these are fresh installs of both Windows 7 and Ubuntu 12.04. Whenever I boot, Grub doesn't load, instead it goes to a black screen with a single blinking (horizontal bar) cursor in the top right corner. However, if I boot, hit escape right as the BIOS/POST screen finishes up, see the Windows Boot Loader and hit escape to make it go back to the BIOS screen. After the BIOS screen, grub shows up and everything functions normally; I can boot into Ubuntu or Win7. I don't want to have to do the Escape, Escape, Wait, Boot trick every time. I have no idea what would be wrong or what information I could give you guys to help diagnose. I have run a sudo update-grub and it found everything normally. I tried adding nomodeset flag in the /etc/default/grub line GRUB_CMDLINE_LINUX_DEFAULT which searching around made me think might work. Thoughts on what I could do to fix this? EDIT: I've tried changing the boot order so that both drives in the BIOS (both are labeled as "Internal HDD") have had a try booting first. I think the problem may be that every time I boot, the BIOS boot order is different... and I have to reset it. It seems to not be stable... but I'm not sure how to go about fixing that either. The machine has both traditional BIOS and UEFI. It came standard in "Legacy" mode; so it is currently set to boot through Legacy mode. I've reinstalled Ubuntu now, and now if I hit escape at the end of the BIOS/POST startup screen, it takes me to GRUB menu. Otherwise it automatically loads Windows. It seems like GRUB is now the acting bootloader, it just doesn't automatically start that unless I ask it to open a bootloader. In my other machines, it has always automatically started at the end of BIOS/POST. EDIT2: Using gparted, I just looked at my partitions, it would seem that my linux-swap partition is currently flagged as the boot partition for my Ubuntu install. I currently only have 2 partitions: one of "ext4" with a mount point of "/" and flag " "; and the "linux-swap" with mount point " " and flag "boot." If I change the boot flag to be on "/," it does not reliably solve the problem. After 10 boots: 2 Booted successfully to GRUB 5 Booted directly to Windows 7 3 booted to the black screen with the cursor and hung there Further research makes me think this is an issue of the BIOS not reliably booting hard drives in the same order or not finding both hard drives. If I ask it to create a "boot menu" sometimes it has 2 entries for "Internal HDD," sometimes 1. Also the list it creates changes order every time I bring it up; so it is not following a consistent boot sequence. Will report back if this is not an issue with GRUB.

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• Not enough free disk space

  - by carmatt95

  I'm new to Ubuntu and I'm getting an error in software updater. When I try and do my daily updates, it says: The upgrade needs a total of 25.3 M free space on disk /boot. Please free at least an additional 25.3 M of disk space on /boot. Empty your trash and remove temporary packages of former installations using sudo apt-get clean. I tried typing in sudo apt-get clean into the terminal but I still get the message. All of the pages I read seem to be for experianced Ubuntuers. Any help would be appreciated. I'm running Ubuntu 12.10. I want to upgrade to 13.04 but understand I have to finish these first. EDIT: @Alaa, This is the output from typing in cat /etc/fstab into the terminal: # /etc/fstab: static file system information. # # Use 'blkid' to print the universally unique identifier for a # device; this may be used with UUID= as a more robust way to name devices # that works even if disks are added and removed. See fstab(5). # # <file system> <mount point> <type> <options> <dump> <pass> /dev/mapper/ubuntu-root / ext4 errors=remount-ro 0 1 # /boot was on /dev/sda1 during installation UUID=fa55c082-112d-4b10-bcf3-e7ffec6cebbc /boot ext2 defaults 0 2 /dev/mapper/ubuntu-swap_1 none swap sw 0 0 /dev/fd0 /media/floppy0 auto rw,user,noauto,exec,utf8 0 0 matty@matty-G41M-ES2L:~$ df -h: Filesystem Size Used Avail Use% Mounted on /dev/mapper/ubuntu-root 915G 27G 842G 4% / udev 984M 4.0K 984M 1% /dev tmpfs 397M 1.1M 396M 1% /run none 5.0M 0 5.0M 0% /run/lock none 992M 1.8M 990M 1% /run/shm none 100M 52K 100M 1% /run/user /dev/sda1 228M 222M 0 100% /boot matty@matty-G41M-ES2L:~$ dpkg -l | grep linux-image: ii linux-image-3.5.0-17-generic 3.5.0-17.28 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-18-generic 3.5.0-18.29 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-19-generic 3.5.0-19.30 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-21-generic 3.5.0-21.32 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-22-generic 3.5.0-22.34 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-23-generic 3.5.0-23.35 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-24-generic 3.5.0-24.37 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-25-generic 3.5.0-25.39 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP ii linux-image-3.5.0-26-generic 3.5.0-26.42 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP iF linux-image-3.5.0-28-generic 3.5.0-28.48 i386 Linux kernel image for version 3.5.0 on 32 bit x86 SMP

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• Shrinking a Linux OEL 6 virtual Box image (vdi) hosted on Windows 7

  - by AndyBaker

  v\:* {behavior:url(#default#VML);} o\:* {behavior:url(#default#VML);} w\:* {behavior:url(#default#VML);} .shape {behavior:url(#default#VML);} Recently for a customer demonstration there was a requirement to build a virtual box image with Oracle Enterprise Manager Cloud Control 12c. This meant installing OEL Linux 6 as well as creating an 11gr2 database and Oracle Enterprise Manager Cloud Control 12c on a single virtual box. Storage was sized at 300Gb using dynamically allocated storage for the virtual box and about 10Gb was used for Linux and the initial build. After copying over all the binaries and performing all the installations the virtual box became in the region of 80Gb used size on the host operating system, however internally it only really needed around 20Gb. This meant 60Gb had been used when copying over all the binaries and although now free was not returned to the host operating system due to the growth of the virtual box storage '.vdi' file.  Once the ‘vdi’ storage had grown it is not shrunk automatically afterwards. Space is always tight on the laptop so it was desirable to shrink the virtual box back to a minimal size and here is the process that was followed. Install 'zerofree' Linux package into the OEL6 virtual box The RPM was downloaded and installed from a site similar to below; http://rpm.pbone.net/index.php3/stat/4/idpl/12548724/com/zerofree-1.0.1-5.el5.i386.rpm.html A simple internet search for ’zerofree Linux rpm’ was easy to perform and find the required rpm. Execute 'zerofree' package on the desired Linux file system To execute this package the desired file system needs to be mounted read only. The following steps outline this process. As root: # umount /u01 As root:# mount –o ro –t ext4 /u01 NOTE: The –o is options and the –t is the file system type found in the /etc/fstab. Next run zerofree against the required storage, this is located by a simple ‘df –h’ command to see the device associated with the mount. As root:# zerofree –v /dev/sda11   NOTE: This takes a while to run but the ‘-v’ option gives feedback on the process. What does Zerofree do? Zerofree’s purpose is to go through the file system and zero out any unused sectors on the volume so that the later stages can shrink the virtual box storage obtaining the free space back. When zerofree has completed the virtual box can be shutdown as the last stage is performed on the physical host where the virtual box vdi files are located. Compact the virtual box ‘.vdi’ files The final stage is to get virtual box to shrink back the storage that has been correctly flagged as free space after executing zerofree. On the physical host in this case a windows 7 laptop a DOS window was opened. At the prompt the first step is to put the virtual box binaries onto the PATH. C:\ >echo %PATH%   The above shows the current value of the PATH environment variable. C:\ >set PATH=%PATH%;c:\program files\Oracle\Virtual Box;   The above adds onto the existing path the virtual box binary location. C:\>cd c:\Users\xxxx\OEL6.1   The above changes directory to where the VDI files are located for the required virtual box machine. C:\Users\xxxxx\OEL6.1>VBoxManage.exe modifyhd zzzzzz.vdi compact  NOTE: The zzzzzz.vdi is the name of the required vdi file to shrink. Finally the above command is executed to perform the compact operation on the ‘.vdi’ file(s). This also takes a long time to complete but shrinks the VDI file back to a minimum size. In the case of the demonstration virtual box OEM12c this reduced the virtual box to 20Gb from 80Gb which was a great outcome to achieve.

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• Web site not responding

  - by Subhransu

  I have website working fine before. But now its not able to connect to the server(I believe that is the problem). But its strange that the message not able to connect to the server is not coming and its keep connecting... for infinite time. Here is the screenshot. Here are some of the useful details about the status of the server. Application starts when server wakes up are: cd /etc/init.d/ Application server running in my server : Traceroute: UPDATE: ps aux USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND root 1 0.0 0.0 19204 744 ? Ss Aug07 0:01 /sbin/init root 2 0.0 0.0 0 0 ? S Aug07 0:00 [kthreadd] root 3 0.0 0.0 0 0 ? S Aug07 0:00 [migration/0] root 4 0.0 0.0 0 0 ? S Aug07 7:15 [ksoftirqd/0] root 5 0.0 0.0 0 0 ? S Aug07 0:00 [migration/0] root 6 0.0 0.0 0 0 ? S Aug07 0:00 [watchdog/0] root 7 0.0 0.0 0 0 ? S Aug07 0:05 [events/0] root 8 0.0 0.0 0 0 ? S Aug07 0:00 [cpuset] root 9 0.0 0.0 0 0 ? S Aug07 0:00 [khelper] root 10 0.0 0.0 0 0 ? S Aug07 0:00 [netns] root 11 0.0 0.0 0 0 ? S Aug07 0:00 [async/mgr] root 12 0.0 0.0 0 0 ? S Aug07 0:00 [pm] root 13 0.0 0.0 0 0 ? S Aug07 0:00 [sync_supers] root 14 0.0 0.0 0 0 ? S Aug07 0:00 [bdi-default] root 15 0.0 0.0 0 0 ? S Aug07 0:00 [kintegrityd/0] root 16 0.0 0.0 0 0 ? S Aug07 0:24 [kblockd/0] root 17 0.0 0.0 0 0 ? S Aug07 0:00 [kacpid] root 18 0.0 0.0 0 0 ? S Aug07 0:00 [kacpi_notify] root 19 0.0 0.0 0 0 ? S Aug07 0:00 [kacpi_hotplug] root 20 0.0 0.0 0 0 ? S Aug07 0:00 [ata/0] root 21 0.0 0.0 0 0 ? S Aug07 0:00 [ata_aux] root 22 0.0 0.0 0 0 ? S Aug07 0:00 [ksuspend_usbd] root 23 0.0 0.0 0 0 ? S Aug07 0:00 [khubd] root 24 0.0 0.0 0 0 ? S Aug07 0:00 [kseriod] root 25 0.0 0.0 0 0 ? S Aug07 0:00 [md/0] root 26 0.0 0.0 0 0 ? S Aug07 0:00 [md_misc/0] root 27 0.0 0.0 0 0 ? S Aug07 0:00 [khungtaskd] root 28 0.0 0.0 0 0 ? S Aug07 0:19 [kswapd0] root 29 0.0 0.0 0 0 ? SN Aug07 0:00 [ksmd] root 30 0.0 0.0 0 0 ? SN Aug07 1:36 [khugepaged] root 31 0.0 0.0 0 0 ? S Aug07 0:00 [aio/0] root 32 0.0 0.0 0 0 ? S Aug07 0:00 [crypto/0] root 37 0.0 0.0 0 0 ? S Aug07 0:00 [kthrotld/0] root 38 0.0 0.0 0 0 ? S Aug07 0:00 [pciehpd] root 40 0.0 0.0 0 0 ? S Aug07 0:00 [kpsmoused] root 41 0.0 0.0 0 0 ? S Aug07 0:00 [usbhid_resumer] root 71 0.0 0.0 0 0 ? S Aug07 0:00 [kstriped] root 203 0.0 0.0 0 0 ? S Aug07 0:00 [scsi_eh_0] root 206 0.0 0.0 0 0 ? S Aug07 0:00 [scsi_eh_1] root 213 0.0 0.0 0 0 ? S Aug07 0:00 [mpt_poll_0] root 214 0.0 0.0 0 0 ? S Aug07 0:00 [mpt/0] root 215 0.0 0.0 0 0 ? S Aug07 0:00 [scsi_eh_2] root 317 0.0 0.0 0 0 ? S Aug07 0:00 [kdmflush] root 319 0.0 0.0 0 0 ? S Aug07 0:00 [kdmflush] root 338 0.0 0.0 0 0 ? S Aug07 4:30 [jbd2/dm-0-8] root 339 0.0 0.0 0 0 ? S Aug07 0:00 [ext4-dio-unwrit] root 411 0.0 0.0 11060 224 ? S<s Aug07 0:00 /sbin/udevd -d root 591 0.0 0.0 0 0 ? S Aug07 0:00 [vmmemctl] root 732 0.0 0.0 0 0 ? S Aug07 0:00 [jbd2/sda1-8] root 733 0.0 0.0 0 0 ? S Aug07 0:00 [ext4-dio-unwrit] root 770 0.0 0.0 0 0 ? S Aug07 0:00 [kauditd] root 907 0.0 0.0 0 0 ? S Aug07 0:02 [flush-253:0] root 963 0.0 0.0 93180 528 ? S<sl Aug07 0:00 auditd root 979 0.0 0.0 248680 1132 ? Sl Aug07 0:04 /sbin/rsyslogd -i /var/run/syslogd.pid -c 4 dbus 991 0.0 0.0 31740 348 ? Ssl Aug07 0:00 dbus-daemon --system root 1023 0.0 0.0 64032 456 ? Ss Aug07 0:01 /usr/sbin/sshd root 1031 0.0 0.0 22076 592 ? Ss Aug07 0:00 xinetd -stayalive -pidfile /var/run/xinetd.pid root 1107 0.0 0.0 78652 744 ? Ss Aug07 0:01 /usr/libexec/postfix/master postfix 1116 0.0 0.0 78904 852 ? S Aug07 0:00 qmgr -l -t fifo -u qpidd 1129 0.0 0.0 234596 1488 ? Ssl Aug07 1:54 /usr/sbin/qpidd --data-dir /var/lib/qpidd --daemon root 1181 0.0 0.0 117176 532 ? Ss Aug07 0:04 crond root 1217 0.0 0.0 108152 412 ? S Aug07 0:00 /bin/sh /usr/bin/mysqld_safe --datadir=/var/lib/mysql --socket=/var/lib/mysql/m mysql 1306 0.0 1.8 792636 72640 ? Sl Aug07 6:51 /usr/libexec/mysqld --basedir=/usr --datadir=/var/lib/mysql --user=mysql --log- root 1334 0.0 0.1 739156 5520 ? Ssl Aug07 0:34 /usr/sbin/shibd -p /var/run/shibboleth/shibd.pid -f -w 30 root 1355 0.0 0.0 4048 272 tty2 Ss+ Aug07 0:00 /sbin/mingetty /dev/tty2 root 1357 0.0 0.0 4048 272 tty3 Ss+ Aug07 0:00 /sbin/mingetty /dev/tty3 root 1360 0.0 0.0 12336 264 ? S< Aug07 0:00 /sbin/udevd -d root 1361 0.0 0.0 12336 240 ? S< Aug07 0:00 /sbin/udevd -d root 1362 0.0 0.0 4048 272 tty4 Ss+ Aug07 0:00 /sbin/mingetty /dev/tty4 root 1364 0.0 0.0 4048 272 tty5 Ss+ Aug07 0:00 /sbin/mingetty /dev/tty5 root 1366 0.0 0.0 4048 272 tty6 Ss+ Aug07 0:00 /sbin/mingetty /dev/tty6 root 1394 0.0 0.0 574892 436 ? Sl Aug07 0:00 /usr/sbin/console-kit-daemon --no-daemon root 1495 0.0 0.0 4048 264 tty1 Ss+ Aug07 0:00 /sbin/mingetty /dev/tty1 root 7665 0.0 0.1 296304 6244 ? Ss Aug16 2:33 /usr/sbin/httpd apache 10298 0.0 0.2 457756 10472 ? Sl Sep07 3:35 /usr/sbin/httpd apache 11684 0.0 0.5 465352 20708 ? Sl Sep12 0:02 /usr/sbin/httpd apache 14570 0.0 0.7 475592 30628 ? Sl Sep12 0:02 /usr/sbin/httpd apache 14877 0.0 0.5 467868 22696 ? Sl Sep12 0:01 /usr/sbin/httpd apache 15128 0.0 0.4 464628 19096 ? Sl Sep12 0:01 /usr/sbin/httpd apache 15151 0.0 0.4 464624 18980 ? Sl Sep12 0:01 /usr/sbin/httpd apache 15169 0.0 0.6 470268 24636 ? Sl Sep12 0:01 /usr/sbin/httpd apache 15238 0.0 0.4 464628 19108 ? Sl Sep12 0:01 /usr/sbin/httpd apache 15266 0.0 0.4 464624 18920 ? Sl Sep12 0:02 /usr/sbin/httpd apache 15312 0.0 0.4 464624 18724 ? Sl Sep12 0:01 /usr/sbin/httpd apache 15427 0.0 0.6 470268 24644 ? Sl Sep12 0:00 /usr/sbin/httpd apache 15814 0.0 0.4 464884 19296 ? Sl 00:14 0:01 /usr/sbin/httpd apache 15830 0.0 0.4 464628 19028 ? Sl 00:24 0:00 /usr/sbin/httpd apache 15859 0.0 0.7 475524 30320 ? Sl 00:31 0:00 /usr/sbin/httpd apache 15897 0.0 0.6 471876 26056 ? Sl 00:42 0:00 /usr/sbin/httpd apache 15926 0.0 0.4 464884 18936 ? Sl 00:46 0:01 /usr/sbin/httpd apache 15970 0.0 0.6 470268 24216 ? Sl 00:57 0:00 /usr/sbin/httpd apache 16010 0.0 0.4 464884 18912 ? Sl 01:04 0:00 /usr/sbin/httpd apache 16023 0.0 0.3 457756 12300 ? Sl 01:05 0:02 /usr/sbin/httpd apache 16176 0.0 0.4 464624 18568 ? Sl 02:01 0:01 /usr/sbin/httpd apache 16213 0.0 0.4 464624 18900 ? Sl 02:22 0:01 /usr/sbin/httpd apache 16240 0.0 0.4 464884 18828 ? Sl 02:35 0:00 /usr/sbin/httpd root 16313 0.0 0.0 19372 968 ? Ss 03:01 0:00 /usr/sbin/anacron -s apache 16361 0.0 0.4 464624 18572 ? Sl 03:17 0:00 /usr/sbin/httpd apache 16364 0.0 0.4 464884 19284 ? Sl 03:19 0:01 /usr/sbin/httpd root 16421 0.0 0.0 9180 1300 ? SN 03:37 0:00 /bin/bash /usr/bin/run-parts /etc/cron.daily root 16426 0.0 0.0 9312 1404 ? SN 03:37 0:00 /bin/bash /etc/cron.daily/backupdb root 16427 0.0 0.0 9064 820 ? SN 03:37 0:00 awk -v progname /etc/cron.daily/backupdb progname {????? print progname ":\n" root 16434 0.0 0.0 50776 2420 ? SN 03:37 0:00 mysqldump --opt --quote-names -u root -px xxx inamiriziv_dokeos_user personal_a root 16435 0.0 0.0 4280 536 ? SN 03:37 0:00 gzip --rsyncable apache 16484 0.0 0.2 457584 11432 ? Sl 03:55 0:04 /usr/sbin/httpd apache 16492 0.0 0.4 464884 19320 ? Sl 03:58 0:02 /usr/sbin/httpd apache 16496 0.0 0.4 464624 18704 ? Sl 04:00 0:02 /usr/sbin/httpd apache 16529 0.0 0.6 470268 24608 ? Sl 04:06 0:02 /usr/sbin/httpd apache 16533 0.0 0.4 464624 18532 ? Sl 04:10 0:00 /usr/sbin/httpd apache 16536 0.0 0.4 464884 18908 ? Sl 04:10 0:00 /usr/sbin/httpd apache 16556 0.0 0.4 464884 18924 ? Sl 04:18 0:02 /usr/sbin/httpd apache 16563 0.0 0.3 457756 12384 ? Sl 04:19 0:07 /usr/sbin/httpd apache 16598 0.0 0.3 457756 12344 ? Sl 04:28 0:02 /usr/sbin/httpd apache 16633 0.0 0.4 464624 18492 ? Sl 04:41 0:00 /usr/sbin/httpd apache 16637 0.0 0.6 470268 24300 ? Sl 04:41 0:02 /usr/sbin/httpd apache 16654 0.0 0.3 457756 12296 ? Sl 04:47 0:02 /usr/sbin/httpd apache 16665 0.0 0.6 470268 24308 ? Sl 04:50 0:03 /usr/sbin/httpd apache 16738 0.0 0.6 470268 24312 ? Sl 05:10 0:02 /usr/sbin/httpd apache 17388 0.0 0.2 457584 11440 ? Sl 08:56 0:01 /usr/sbin/httpd apache 17391 0.0 0.3 457756 12296 ? Sl 08:57 0:00 /usr/sbin/httpd apache 17397 0.0 0.3 457756 12312 ? Sl 08:59 0:00 /usr/sbin/httpd apache 17401 0.0 0.3 457756 12284 ? Sl 09:00 0:00 /usr/sbin/httpd apache 17420 0.0 0.2 457584 11436 ? Sl 09:04 0:01 /usr/sbin/httpd apache 17426 0.0 0.3 457756 12324 ? Sl 09:07 0:01 /usr/sbin/httpd apache 17431 0.0 0.3 457756 12276 ? Sl 09:08 0:03 /usr/sbin/httpd apache 17434 0.0 0.3 457756 12308 ? Sl 09:08 0:00 /usr/sbin/httpd apache 17437 0.0 0.2 457584 11440 ? Sl 09:09 0:01 /usr/sbin/httpd apache 17442 0.0 0.2 457584 11436 ? Sl 09:10 0:01 /usr/sbin/httpd apache 17445 0.0 0.3 457756 12328 ? Sl 09:11 0:01 /usr/sbin/httpd apache 17449 0.0 0.3 457756 12292 ? Sl 09:12 0:01 /usr/sbin/httpd apache 17454 0.0 0.2 457584 11444 ? Sl 09:15 0:01 /usr/sbin/httpd apache 17457 0.0 0.2 457584 11436 ? Sl 09:15 0:01 /usr/sbin/httpd apache 17461 0.0 0.3 457756 12304 ? Sl 09:16 0:01 /usr/sbin/httpd apache 17465 0.0 0.2 457584 11444 ? Sl 09:18 0:01 /usr/sbin/httpd apache 17468 0.0 0.2 457584 11436 ? Sl 09:18 0:01 /usr/sbin/httpd apache 17473 0.0 0.4 464884 18940 ? Sl 09:19 0:00 /usr/sbin/httpd apache 17476 0.0 0.4 464628 18736 ? Sl 09:20 0:00 /usr/sbin/httpd apache 17479 0.0 0.2 457584 11440 ? Sl 09:20 0:01 /usr/sbin/httpd apache 17483 0.0 0.2 457584 11416 ? Sl 09:21 0:00 /usr/sbin/httpd apache 17486 0.0 0.3 457756 12296 ? Sl 09:21 0:01 /usr/sbin/httpd apache 17489 0.0 0.4 464884 18928 ? Sl 09:21 0:00 /usr/sbin/httpd apache 17492 0.0 0.2 457584 11260 ? Sl 09:22 0:00 /usr/sbin/httpd apache 17496 0.0 0.3 457756 12372 ? Sl 09:22 0:01 /usr/sbin/httpd apache 17500 0.0 0.2 457584 11428 ? Sl 09:23 0:00 /usr/sbin/httpd apache 17504 0.0 0.2 457584 11432 ? Sl 09:25 0:00 /usr/sbin/httpd apache 17509 0.0 0.3 457756 12336 ? Sl 09:27 0:01 /usr/sbin/httpd apache 17513 0.0 0.2 457584 11436 ? Sl 09:29 0:01 /usr/sbin/httpd apache 17517 0.0 0.2 457584 11448 ? Sl 09:31 0:00 /usr/sbin/httpd apache 17520 0.0 0.3 457584 12128 ? Sl 09:32 0:00 /usr/sbin/httpd apache 17525 0.0 0.4 464884 18960 ? Sl 09:34 0:00 /usr/sbin/httpd apache 17529 0.0 0.2 457584 11420 ? Sl 09:36 0:00 /usr/sbin/httpd apache 17533 0.0 0.2 457584 11436 ? Sl 09:38 0:00 /usr/sbin/httpd apache 17537 0.0 0.2 457584 11436 ? Sl 09:38 0:00 /usr/sbin/httpd apache 17542 0.0 0.4 464884 18840 ? Sl 09:40 0:00 /usr/sbin/httpd apache 17546 0.0 0.3 457756 12320 ? Sl 09:41 0:00 /usr/sbin/httpd apache 17550 0.0 0.2 457584 11440 ? Sl 09:42 0:00 /usr/sbin/httpd apache 17554 0.0 0.2 457584 11436 ? Sl 09:43 0:00 /usr/sbin/httpd apache 17557 0.0 0.2 457584 11436 ? Sl 09:44 0:00 /usr/sbin/httpd apache 17560 0.0 0.2 457584 11428 ? Sl 09:44 0:01 /usr/sbin/httpd apache 17568 0.0 0.4 464884 18824 ? Sl 09:48 0:00 /usr/sbin/httpd apache 17572 0.0 0.2 457584 11428 ? Sl 09:48 0:00 /usr/sbin/httpd apache 17575 0.0 0.2 457584 11428 ? Sl 09:48 0:01 /usr/sbin/httpd apache 17583 0.0 0.2 457584 11432 ? Sl 09:50 0:00 /usr/sbin/httpd apache 17586 0.0 0.3 457756 12264 ? Sl 09:50 0:00 /usr/sbin/httpd apache 17589 0.0 0.2 457584 11420 ? Sl 09:51 0:00 /usr/sbin/httpd apache 17597 0.0 0.2 457584 11420 ? Sl 09:53 0:02 /usr/sbin/httpd apache 17600 0.0 0.3 457756 12376 ? Sl 09:54 0:00 /usr/sbin/httpd apache 17604 0.0 0.2 457584 11436 ? Sl 09:55 0:00 /usr/sbin/httpd apache 17610 0.0 0.2 457584 11420 ? Sl 09:59 0:00 /usr/sbin/httpd apache 17615 0.0 0.2 457584 11424 ? Sl 10:00 0:00 /usr/sbin/httpd apache 17618 0.0 0.4 464884 19288 ? Sl 10:00 0:00 /usr/sbin/httpd apache 17635 0.0 0.2 457584 11416 ? Sl 10:01 0:00 /usr/sbin/httpd apache 17639 0.0 0.2 457584 11440 ? Sl 10:02 0:00 /usr/sbin/httpd apache 17643 0.0 0.2 457584 11448 ? Sl 10:03 0:00 /usr/sbin/httpd apache 17648 0.0 0.4 464884 18868 ? Sl 10:06 0:00 /usr/sbin/httpd apache 17651 0.0 0.2 457584 11416 ? Sl 10:07 0:00 /usr/sbin/httpd apache 17655 0.0 0.3 457756 12268 ? Sl 10:08 0:01 /usr/sbin/httpd apache 17658 0.0 0.2 457584 11440 ? Sl 10:08 0:00 /usr/sbin/httpd apache 17663 0.0 0.3 457756 12292 ? Sl 10:11 0:00 /usr/sbin/httpd apache 17666 0.0 0.2 457584 11432 ? Sl 10:11 0:00 /usr/sbin/httpd apache 17672 0.0 0.2 457584 11428 ? Sl 10:14 0:00 /usr/sbin/httpd apache 17676 0.0 0.2 457584 11424 ? Sl 10:16 0:00 /usr/sbin/httpd apache 17680 0.0 0.4 464884 18884 ? Sl 10:16 0:00 /usr/sbin/httpd apache 17683 0.0 0.2 457584 11420 ? Sl 10:19 0:00 /usr/sbin/httpd apache 17689 0.0 0.2 457584 11424 ? Sl 10:23 0:00 /usr/sbin/httpd apache 17692 0.0 0.2 457584 11428 ? Sl 10:23 0:00 /usr/sbin/httpd apache 17696 0.0 0.3 457584 11980 ? Sl 10:25 0:00 /usr/sbin/httpd apache 17699 0.0 0.2 457584 11436 ? Sl 10:25 0:00 /usr/sbin/httpd apache 17704 0.0 0.2 457584 11232 ? Sl 10:27 0:00 /usr/sbin/httpd apache 17711 0.0 0.2 457584 11412 ? Sl 10:30 0:01 /usr/sbin/httpd postfix 17714 0.0 0.0 78732 3216 ? S 10:30 0:00 pickup -l -t fifo -u apache 17715 0.0 0.2 457584 11436 ? Sl 10:30 0:00 /usr/sbin/httpd apache 17718 0.0 0.2 457584 11428 ? Sl 10:31 0:00 /usr/sbin/httpd apache 17726 0.0 0.2 457584 11420 ? Sl 10:36 0:00 /usr/sbin/httpd apache 17731 0.0 0.2 457584 11168 ? Sl 10:37 0:00 /usr/sbin/httpd apache 17734 0.0 0.4 464884 18796 ? Sl 10:37 0:00 /usr/sbin/httpd apache 17743 0.0 0.2 457584 11220 ? Sl 10:43 0:00 /usr/sbin/httpd apache 17746 0.0 0.2 457584 11172 ? Sl 10:44 0:00 /usr/sbin/httpd apache 17750 0.0 0.3 457756 12288 ? Sl 10:44 0:00 /usr/sbin/httpd apache 17753 0.0 0.2 457584 11220 ? Sl 10:45 0:00 /usr/sbin/httpd apache 17756 0.0 0.2 457584 11424 ? Sl 10:46 0:00 /usr/sbin/httpd apache 17763 0.0 0.3 457756 12204 ? Sl 10:51 0:00 /usr/sbin/httpd apache 17766 0.0 0.2 457584 11428 ? Sl 10:51 0:00 /usr/sbin/httpd apache 17771 0.0 0.2 457584 11180 ? Sl 10:54 0:00 /usr/sbin/httpd apache 17774 0.0 0.2 457584 11416 ? Sl 10:54 0:00 /usr/sbin/httpd apache 17779 0.0 0.2 457584 11428 ? Sl 10:58 0:00 /usr/sbin/httpd apache 17784 0.0 0.2 457584 11380 ? Sl 11:00 0:00 /usr/sbin/httpd apache 17805 0.0 0.2 457584 11380 ? Sl 11:05 0:00 /usr/sbin/httpd apache 17818 0.0 0.2 457584 11156 ? Sl 11:11 0:00 /usr/sbin/httpd apache 17823 0.0 0.2 457584 11416 ? Sl 11:12 0:00 /usr/sbin/httpd apache 17827 0.0 0.2 457584 11412 ? Sl 11:13 0:00 /usr/sbin/httpd apache 17831 0.0 0.2 457584 11132 ? Sl 11:13 0:00 /usr/sbin/httpd root 17835 0.0 0.0 97780 3792 ? S 11:14 0:00 sshd: smaity [priv] smaity 17839 0.0 0.0 97780 1748 ? S 11:15 0:00 sshd: smaity@pts/0 smaity 17840 0.0 0.0 108288 1928 pts/0 Ss 11:15 0:00 -bash apache 17858 0.0 0.4 464884 18856 ? Sl 11:16 0:00 /usr/sbin/httpd apache 17862 0.0 0.3 457584 11904 ? Sl 11:17 0:00 /usr/sbin/httpd apache 17866 0.0 0.2 457584 11212 ? Sl 11:19 0:00 /usr/sbin/httpd apache 17871 0.0 0.2 457584 11144 ? Sl 11:20 0:00 /usr/sbin/httpd apache 17875 0.0 0.2 457584 11416 ? Sl 11:23 0:00 /usr/sbin/httpd apache 17880 0.0 0.2 457584 11408 ? Sl 11:23 0:00 /usr/sbin/httpd apache 17883 0.0 0.2 457584 11412 ? Sl 11:24 0:00 /usr/sbin/httpd apache 17888 0.0 0.2 457584 11412 ? Sl 11:25 0:00 /usr/sbin/httpd apache 17891 0.0 0.2 457584 11140 ? Sl 11:26 0:00 /usr/sbin/httpd apache 17899 0.0 0.2 457584 10984 ? Sl 11:32 0:00 /usr/sbin/httpd apache 17902 0.0 0.2 457584 11680 ? Sl 11:33 0:00 /usr/sbin/httpd apache 17906 0.0 0.2 457584 10980 ? Sl 11:33 0:00 /usr/sbin/httpd Output of wget http://mydomain.com/ --2012-09-13 13:35:17-- http://mydomain.com/ Resolving mydomain.com... 127.0.0.1 Connecting to mydomain.com|127.0.0.1|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 45 [text/html] Saving to: “index.html” 0% [ ] 0 --.-K/s in 0s Cannot write to “index.html” (No space left on device). UPDATE3: output of df -h Filesystem Size Used Avail Use% Mounted on /dev/mapper/vg_inamivm-lv_root 18G 17G 0 100% / tmpfs 1.9G 0 1.9G 0% /dev/shm /dev/sda1 485M 71M 389M 16% /boot output of wget -O /dev/null http://127.0.0.1/ --2012-09-13 13:47:49-- http://127.0.0.1/ Connecting to 127.0.0.1:80... connected. HTTP request sent, awaiting response... 200 OK Length: 45 [text/html] Saving to: “/dev/null” 100%[======================================================================================================>] 45 --.-K/s in 0s 2012-09-13 13:47:54 (8.57 MB/s) - “/dev/null” saved [45/45]

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• iSCSI timeouts under high load

  - by Antonio

  I have two servers connected via Gigabit Ethernet. One is iSCSI target, the second one is initiator. When I run mkfs.ext4 at initiator, after a while disk IO slows down critically. In the target host I can see the following in syslog: Sep 14 09:40:03 sh11 tgtd: abort_task_set(1139) found 119668c 0 Sep 14 09:40:03 sh11 tgtd: abort_cmd(1115) found 119668c 6 Sep 14 09:40:03 sh11 tgtd: abort_task_set(1139) found 119668d 0 Sep 14 09:40:03 sh11 tgtd: abort_cmd(1115) found 119668d 6 Sep 14 09:40:03 sh11 tgtd: abort_task_set(1139) found 119668e 0 Sep 14 09:40:03 sh11 tgtd: abort_cmd(1115) found 119668e 6 Sep 14 09:40:03 sh11 tgtd: abort_task_set(1139) found 1196696 0 Sep 14 09:40:03 sh11 tgtd: abort_cmd(1115) found 1196696 6 Sep 14 09:40:03 sh11 tgtd: abort_task_set(1139) found 119669e 0 Sep 14 09:40:03 sh11 tgtd: abort_cmd(1115) found 119669e 6 Sep 14 09:40:04 sh11 tgtd: abort_task_set(1139) found 119669f 0 Sep 14 09:40:04 sh11 tgtd: abort_cmd(1115) found 119669f 6 And load average grows to 12 or even more: # uptime 12:37:00 up 23 days, 13:25, 1 user, load average: 12.00, 7.00, 4.00 CentOS 6.3 tgtd 1.0.24 Intel Pentium 4 2.4GHz 1Gb RAM 2Tb WD Cavlar Green SATA 2.0 #lspci 00:00.0 Host bridge: Intel Corporation 82845G/GL[Brookdale-G]/GE/PE DRAM Controller/Host-Hub Interface (rev 02) 00:01.0 PCI bridge: Intel Corporation 82845G/GL[Brookdale-G]/GE/PE Host-to-AGP Bridge (rev 02) 00:1d.0 USB controller: Intel Corporation 82801DB/DBL/DBM (ICH4/ICH4-L/ICH4-M) USB UHCI Controller #1 (rev 02) 00:1d.1 USB controller: Intel Corporation 82801DB/DBL/DBM (ICH4/ICH4-L/ICH4-M) USB UHCI Controller #2 (rev 02) 00:1d.2 USB controller: Intel Corporation 82801DB/DBL/DBM (ICH4/ICH4-L/ICH4-M) USB UHCI Controller #3 (rev 02) 00:1d.7 USB controller: Intel Corporation 82801DB/DBM (ICH4/ICH4-M) USB2 EHCI Controller (rev 02) 00:1e.0 PCI bridge: Intel Corporation 82801 PCI Bridge (rev 82) 00:1f.0 ISA bridge: Intel Corporation 82801DB/DBL (ICH4/ICH4-L) LPC Interface Bridge (rev 02) 00:1f.1 IDE interface: Intel Corporation 82801DB (ICH4) IDE Controller (rev 02) 00:1f.3 SMBus: Intel Corporation 82801DB/DBL/DBM (ICH4/ICH4-L/ICH4-M) SMBus Controller (rev 02) 00:1f.5 Multimedia audio controller: Intel Corporation 82801DB/DBL/DBM (ICH4/ICH4-L/ICH4-M) AC'97 Audio Controller (rev 02) 01:00.0 VGA compatible controller: Advanced Micro Devices [AMD] nee ATI RV200 QW [Radeon 7500] 02:01.0 Ethernet controller: D-Link System Inc DGE-530T Gigabit Ethernet Adapter (rev 11) (rev 11) 02:02.0 RAID bus controller: VIA Technologies, Inc. VT6421 IDE/SATA Controller (rev 50) 02:03.0 RAID bus controller: VIA Technologies, Inc. VT6421 IDE/SATA Controller (rev 50) 02:04.0 RAID bus controller: Silicon Image, Inc. SiI 3114 [SATALink/SATARaid] Serial ATA Controller (rev 02) 02:08.0 Ethernet controller: Intel Corporation 82801DB PRO/100 VE (CNR) Ethernet Controller (rev 82) Is there a way to tune target host to avoid these timeouts?

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• Linux boot on a raid1 software raid ?

  - by azera

  Hello I am trying to convert my single disk boot to a raid1 boot So far here is what i have: I sucessfully create the raid 1 as degraded with the new drive alone, I copied all the data on it I can mount that raid 1, see its files etc I already have a raid5 that is working on the same box (although not booting on it) I have installed grub on both drive When grub boot, it loads the kernel alright, but during the kernel boot it fails to load the "root block device" The kernel tells me : 1 - detected that root device is an md device 2 - determining root devices 3 - mounting root 4 - mounting /dev/md125 on /newroot failed: input/output error. Please enter another root device: ... At this point, if I enter /dev/sda3 (my "old" root device that isn't converted to raid yet) everything boots fine without the root. The /dev/md125 device is indeed created but it seems to be created after the error happens, as in it creates it after loading the device, when mdadm is loaded. Somehow it looks like it can't/doesn't load the raid array before it needs to mount it, and I don't know how I can solve that. My config files (taken from the system once it boots with sda3 as root device): $ cat /etc/mdadm.conf ARRAY /dev/md/md0-r5 metadata=0.90 UUID=1a118934:c831bdb3:64188b84:66721085 ARRAY /dev/md125 metadata=0.90 UUID=48ec4190:a80d4dde:64188b84:66721085 $ cat /proc/mdstat Personalities : [raid1] [raid6] [raid5] [raid4] [raid0] [raid10] md125 : active raid1 sdc3[1] 477853312 blocks [2/1] [_U] md127 : active raid5 sdd[0] sdf[3] sdb[2] sde[1] 4395415488 blocks level 5, 64k chunk, algorithm 2 [4/4] [UUUU] unused devices: <none> $ cat /boot/grub/menu.lst default 0 timeout 8 splashimage=(hd0,0)/boot/grub/splash.xpm.gz title Gentoo Linux 2.6.31-r10 root (hd0,0) #kernel /boot/kernel-genkernel-x86_64-2.6.31-gentoo-r10 root=/dev/ram0 real_root=/dev/sda3 kernel /boot/kernel-genkernel-x86_64-2.6.31-gentoo-r10 root=/dev/md125 md=125,/dev/sdc3,/dev/sda3 initrd /boot/initramfs-genkernel-x86_64-2.6.31-gentoo-r10 # blkid /dev/sda1: UUID="89fee223-b845-4e0a-8a0b-e6cf695d5bcf" TYPE="ext2" /dev/sda2: UUID="a72296a8-d7d4-447f-a34b-ee920fd1a767" TYPE="swap" /dev/sda3: UUID="97eb0a6a-c385-4a9d-bf74-c0bab1fa4dc1" TYPE="ext3" /dev/sdb: UUID="1a118934-c831-bdb3-6418-8b8466721085" TYPE="linux_raid_member" /dev/sdc1: UUID="d36537fd-19a0-b8a3-6418-8b8466721085" TYPE="linux_raid_member" /dev/sdd: UUID="1a118934-c831-bdb3-6418-8b8466721085" TYPE="linux_raid_member" /dev/sde: UUID="1a118934-c831-bdb3-6418-8b8466721085" TYPE="linux_raid_member" /dev/md127: UUID="13a41589-4cf1-4c04-91ca-37484182c783" TYPE="ext4" /dev/sdf: UUID="1a118934-c831-bdb3-6418-8b8466721085" TYPE="linux_raid_member" /dev/sdc2: UUID="a1916397-1b48-45d7-9f98-73aa521e882f" TYPE="swap" /dev/sdc3: UUID="48ec4190-a80d-4dde-6418-8b8466721085" TYPE="linux_raid_member" /dev/md125: UUID="c947ed64-1d4d-4d1d-b4d2-24669fff916e" SEC_TYPE="ext2" TYPE="ext3" # mdadm -E mdadm: No devices to examine # fdisk -l Disk /dev/sda: 500.1 GB, 500107862016 bytes 255 heads, 63 sectors/track, 60801 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Disk identifier: 0xe975e9fc Device Boot Start End Blocks Id System /dev/sda1 1 5 40131 83 Linux /dev/sda2 6 1311 10490445 82 Linux swap / Solaris /dev/sda3 1312 60801 477853425 83 Linux Disk /dev/sdc: 500.1 GB, 500107862016 bytes 255 heads, 63 sectors/track, 60801 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Disk identifier: 0xe975e9fc Device Boot Start End Blocks Id System /dev/sdc1 1 5 40131 83 Linux /dev/sdc2 6 1311 10490445 82 Linux swap / Solaris /dev/sdc3 1312 60801 477853425 83 Linux Disk /dev/md125: 489.3 GB, 489321791488 bytes 2 heads, 4 sectors/track, 119463328 cylinders Units = cylinders of 8 * 512 = 4096 bytes Disk identifier: 0x00000000 Disk /dev/md125 doesn't contain a valid partition table

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• EC2 Filesystem / Files stored on the wrong partiton after launching new instance from AMI

  - by Philip Isaacs

  Today I set up a new EC2 Instance from and AMI I created from an older EC2 instance. When I launched the new instance I took the AMI that was on a small instance and launched with a medium instance. From what I can tell this is pretty standard stuff. But here's the stang part. According to AWS these are the differences Small Instance (Default) 1.7 GB of memory, 1 EC2 Compute Unit (1 virtual core with 1 EC2 Compute Unit), 160 GB of local instance storage, 32-bit or 64-bit platform Medium Instance 3.75 GB of memory, 2 EC2 Compute Units (1 virtual core with 2 EC2 Compute Units each), 410 GB of local instance storage, 32-bit or 64-bit platform Okay now here's where I'm having an issue. I when I log into the new bigger instance it still reports only having 1.7 GB of ram. The other strange part is that all my old partitions are still their in the same configurations. I see a new larger partition /mnt which is essential empty. Filesystem Size Used Avail Use% Mounted on /dev/sda1 7.9G 5.9G 1.6G 79% / none 846M 120K 846M 1% /dev none 879M 0 879M 0% /dev/shm none 879M 76K 878M 1% /var/run none 879M 0 879M 0% /var/lock none 879M 0 879M 0% /lib/init/rw /dev/sda2 335G 195M 318G 1% /mnt /dev/sdf 16G 9.9G 5.1G 67% /var2 This EC2 is a web server and I was serving files off the /var2 directory but for some reason the instance is storing everything on / Okay here's what I'd like to do. Move all my website files to /mnt and have the web server point to that. Any suggestions? If it helps here is what my fstab looks like as well. root@myserver:/var# mount -l /dev/sda1 on / type ext3 (rw) [cloudimg-rootfs] proc on /proc type proc (rw,noexec,nosuid,nodev) none on /sys type sysfs (rw,noexec,nosuid,nodev) none on /sys/kernel/debug type debugfs (rw) none on /sys/kernel/security type securityfs (rw) none on /dev type devtmpfs (rw,mode=0755) none on /dev/pts type devpts (rw,noexec,nosuid,gid=5,mode=0620) none on /dev/shm type tmpfs (rw,nosuid,nodev) none on /var/run type tmpfs (rw,nosuid,mode=0755) none on /var/lock type tmpfs (rw,noexec,nosuid,nodev) none on /lib/init/rw type tmpfs (rw,nosuid,mode=0755) /dev/sda2 on /mnt type ext3 (rw) /dev/sdf on /var2 type ext4 (rw,noatime) I hope this question makes sense. Basically i want my old files on this new partition. Thanks in advance

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