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  • Adding a jar file to CLASSPATH is still not executable

    - by Simon O'Hanlon
    Perhaps I just don't understand how the whole CLASSPATH environment variable works when trying to find .jar files on your system. I thought if you specified it, you could launch .jar files with java in much the same way that you can launch executables that are on your path. I have an executable java archive (.jar file) on my system, that I stuck in /usr/local/bin/gatk/. I added this to my CLASSPATH via: export CLASSPATH=/usr/local/bin/gatk/GenomeAnalysisTK.jar I thought this would make the .jar file visible to my JVM. When I try to invoke it with java -jar GenomeAnalysisTK.jar #Error: Unable to access jarfile .gatk/GenomeAnalysisTK.jar I can invoke it setting the absolute path, e.g. java -jar /usr/local/bin/gatk/GenomeAnalysisTK.jar, however I'd rather not type the full path each time. I have read many of the linked tutorials but somehow I don't seem to be getting this right and I can't understand what I am doing wrong.

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  • APC File Cache not working but user cache is fine

    - by danishgoel
    I have just got a VPS (with cPanel/WHM) to test what gains i could get in my application with using apc file cache AND user cache. So firstly I got the PHP 5.3 compiled in as a DSO (apache module). Then installed APC via PECL through SSH. (First I tried with WHM Module installer, it also had the same problem, so I tried it via ssh) All seemed fine and phpinfo showed apc loaded and enabled. Then I checked with apc.php. All seemed OK But as I started testing my php application, the stats in apc for File Cache Information state: Cached Files 0 ( 0.0 Bytes) Hits 1 Misses 0 Request Rate (hits, misses) 0.00 cache requests/second Hit Rate 0.00 cache requests/second Miss Rate 0.00 cache requests/second Insert Rate 0.00 cache requests/second Cache full count 0 Which meant no PHP files were being cached, even though I had browsed through over 10 PHP files having multiple includes. So there must have been some Cached Files. But the user cache is functioning fine. User Cache Information Cached Variables 0 ( 0.0 Bytes) Hits 1000 Misses 1000 Request Rate (hits, misses) 0.84 cache requests/second Hit Rate 0.42 cache requests/second Miss Rate 0.42 cache requests/second Insert Rate 0.84 cache requests/second Cache full count 0 Its actually from an APC caching test script which tries to retrieve and store 1000 entries and gives me the times. A sort of simple benchmark. Can anyone help me here. Even though apc.cache_by_default = 1, no php files are being cached. This is my apc config Runtime Settings apc.cache_by_default 1 apc.canonicalize 1 apc.coredump_unmap 0 apc.enable_cli 0 apc.enabled 1 apc.file_md5 0 apc.file_update_protection 2 apc.filters apc.gc_ttl 3600 apc.include_once_override 0 apc.lazy_classes 0 apc.lazy_functions 0 apc.max_file_size 1M apc.mmap_file_mask apc.num_files_hint 1000 apc.preload_path apc.report_autofilter 0 apc.rfc1867 0 apc.rfc1867_freq 0 apc.rfc1867_name APC_UPLOAD_PROGRESS apc.rfc1867_prefix upload_ apc.rfc1867_ttl 3600 apc.serializer default apc.shm_segments 1 apc.shm_size 32M apc.slam_defense 1 apc.stat 1 apc.stat_ctime 0 apc.ttl 0 apc.use_request_time 1 apc.user_entries_hint 4096 apc.user_ttl 0 apc.write_lock 1 Also most php files are under 20KB, thus, apc.max_file_size = 1M is not the cause. I have also tried using 'apc_compile_file ' to force some files into opcode cache with no luck. I have also re-installed APC with Debugging enabled, but nothing shows in the error_log I have also tried setting mmap_file_mask to /dev/zero and /tmp/apc.xxxxxx, i have also set /tmp permissions to 777 to no avail Any clue anyone. Update: I have tried following things and none cause APC file cache to populate 1. set apc.enable_cli = 1 AND run a script from cli 2. Set apc.max_file_size = 5M (just in case) 3. switched php handler from dso to FastCGI in WHM (then switched it back to dso as it did not solve the problem) 4. Even tried restarting the container

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  • Outlook 2010: Cached Exchange Mode, File Storage and Security

    - by dangowans
    I'm in an environment where profile space is a premium, and most users have "frozen" machines, meaning that on restart, the C: drive is returned to its original state. Cached Exchange Mode sounds interesting to me, but I'm wondering if we can take advantage of it without causing other issues. Where in the file system does the cached data get stored? Is it in the profile? A temp folder? Is the cached file secured in some way to keep others from seeing it?

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  • Cropping a PDF File's Margin During Printing

    - by JavaMan
    I'm using the free Acrobat Reader to print out some pdf documents having very large top/bottom/left/right margins. I want to remove the margins (which are wasting too much space and making the fonts too small). I used to use Acrobat (the paid version having edit features) to crop the src pdf file manually. But since it is an old version it does not support new pdf format and I don't want to upgrade for such a simple use. Is there any free way to crop/remove unwanted white margins from the printed pdf? I am thinking to print the pdf files to a PDF Printer like the Bullzip PDF Printer and enlarge the output file manually so as to remove any white margin. But there does not seem to be such a feature in Bullzip PDF Printer. Is there any other virtual printer software that can be used for this purpose?

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  • Finding Image resolution in PDF file?

    - by Dave
    I have a problem of having some users creating very large PDFs. On the other hands I have PDF sent from our fax machines that are really small in size and totally printable. My question is Is there any way I can find the resolution (DPI) of the PDF. I search the internet, could not find any answer. Checked the properties of the file, this information was not stored there, at least in my case. What is the optimum resolution of converting text file into image PDF. 96dpi, 300dpi or more ? Fun question. Can I resize a PDF which was scanned with high dpi into smaller dpi? I know some answers might not be available as I have already searched the internet and could not find answers. Note: My PDF are entirely images, text to images. I am also familiar with primoPDF (free) something you can experiment with

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  • SQL restore from single file db to filegroup

    - by Mauro
    I have a 180GB MOSS 2007 database whose maintenance (i.e. backups and restores) are becoming a problem. Part of the issue can be resolved by splitting the three content sites down into their own site collections, however this will likely still leave me with a 100gb DB to deal with. Whilst this isnt entirely problematic for SQL it does mean that backups / restores take far too long. my idea is to split each of the databases to 30gb files, then to import the content into them which should distribute the content across the file groups,making it much easier / faster to backup/restore. Is there a way to backup from a single file and restore to a filegroup? If i have the wrong understanding of filegroups then I'm more than happy to find out other methods of managing the size of databases.

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  • Distributed, Parallel, Fault-tolerant File System

    - by Eddified
    There are so many choices that it's hard to know where to start. My requirements are these: Runs on Linux Most of the files will be between 5-9 MB in size. There will also be a significant number of small-ish jpgs (100px x 100px). All of the files need to be available over http. Redundancy -- ideally it would provide the space efficiency similar to RAID 5 of 75% (in RAID 5 this would be calculated thus: with 4 identical disks, 25% of the space is used for parity = 75% efficent) Must support several petabytes of data scalable runs on commodity hardware In addition, I look for these qualities, though they are not "requirements": Stable, mature file system Lots of momentum and support etc I would like some input as to which file system works best for the given requirements. Some people at my organization are leaning towards MogileFS, but I'm not convinced of the stability and momentum of that project. GlusterFS and Lustre, based on my limited research, appear to be better supported... Thoughts?

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  • Moving the OS X swap file to a faster drive

    - by Milky Joe
    I have a new Mac Mini that's running the latest version of Snow Leopard. The internal drive is a bit of a slouch. I'd like to move the swap file (or whatever it's called is OS X) to my faster external drive (Firewire 800, permanently connected). Is this possible? I've read that the old solutions aren't working in 10.6. My Mac has 2GB of RAM, so the swap file is used quite a bit when I'm doing intensive work (Photoshop etc).

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  • CentOS Default ACLs on Existing File System Objects

    - by macinjosh
    Is there a way to have existing file system objects inherit newly set default ACL settings of their parent directories? The reason I need to do this is that I have an user who connect via SFTP to my server. They are able to change directories in their FTP client and see the root folder and the rest of the server. They don't have permissions to change or edit anything but their own user directory but I would like to prevent them from even view the contents of other directories. Is there a better way to do this than ACLs? If ACLs are the way to go I'm assuming a default ACL on the root directory would be the best way to do restrict access. I could then selectively give the user permission to view certain directories. The problem is default ACLs are only inherited by new file system objects and not existing ones.

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  • Enable file download via redirect in IE7

    - by Christian W
    Our application enables our customers to download files to their computer. The way I have implemented it is using asp.net with a dropdown. When the user clicks the dropdown they get the choice of "PDF","Powerpoint", and a couple of other choices depending on circumstances. Then, in postback depending on the choice the user made, it will return a file (changing the content-header and such and then bitbanging a file to the user). This works perfectly in all browsers, but IE7 complains that this is a security risk and blocks the download. Is there any way for the users to authorize downloads from our webapplication?

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  • custom adm file for IE search providers on Windows 2003

    - by filipv
    Hi, I have been stumped by this issue for some time, I created a custom ADM template for a customer to populate the search providers in Internet Explorer 7 and 8. The custom ADM works fine and I have set 3 search providers, the problem is that I cannot change them (the customer wants to change the entry for wikipedia from EN to NL), I edited the ADM file but the clients seem to keep on using the old settings. Removing/replacing the adm file has no effect either, the settings remain. I used the following article as a base: http://support.microsoft.com/kb/918238 For IE8 you need to work with a name instead of a UID for the default entry, that works as expected. but there seems to be no way to change the setting once in place.

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  • File not updating in symlink'd folder in IIS

    - by Daniel Short
    I have the following setup: Site1/Shared/ - Physical folder Site2/Shared/ - symlink using mklink to Site1/Shared I've updated a javascript file in Site1/Shared/scripts, and the change is being reflected on Site1. However, the change is not being reflected through IIS on Site2. When I open Site1/Shared/scripts/common.js and Site2/Shared/scripts/common.js, they match exactly. But when I view the files through Safari, Firefox, Chrome, IE, from any machine (even machines that have never visited the sites), the change is not reflected on Site2. Here are URLs to the files to review: Site 1: http://www.landsofamerica.com/shared/scripts/common.js Site 2: http://www.landsoftexas.com/shared/scripts/common.js These files look exactly the same when logged onto the server, and the shared folder under landsoftexas.com is a symlink created using mklink to the shared folder under landsofamerica.com. Any idea what might be causing IIS to serve the wrong file?

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  • Temporary file storage - script for webserver

    - by Chris
    I'm looking for a script (preferably php) which I can use for to temporarily exchange files. I had such a script before (it was written in flash), but - damn - just can't find it anymore. Here the features I'm looking for: I have a logon, which allows me to create "upload spaces". for these "upload spaces" I define a time how long the space will be available for (until the files are deleted), and who can access it - in the means of typing in an email, and that user gets a link with the "online space", user ID and password. the other user then clicks on the link and uploads the file, and I get (preferably) an email should there be any file changes I get an email before the content gets deleted Now, 3 additional things: - it should be open- source - run on linux (preferably lamp) - no, I dont wanna use dropbox or similar :p Thanks in advance everybody, Cheers Chris

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  • FreeNAS - how to "Exclude from file" in Rsyncd (GUI)

    - by user179181
    I am trying to set rsync tasks to Pull user profiles from 11 Windows machines running DeltaCopy Server and then configure ZFS periodic snapshot tasks for a backup solution. So far this has been working fine, although i would like to exclude certain file types like .DAT or NTUSER.DAT. My Exclusion file resides on the local ZFS Dataset (Receiving side) and is as follows: Temp Temporary Internet Files NTUSER.DAT NTUSER.DAT.LOG *.dat *.tmp *.DAT.log *.ost *.pst The command i typed under Auxiliary Parameters (Rsyncd Global Conf under services)is as follows: exclude from = /mnt/Storage/User_Profiles/exclude.txt Ive tried deleting the .DAT files from the receiving end and just as i start to get excited i click refresh and there they are again

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  • Open and scroll through 42 GB text file in Mac OS X

    - by Django Johnson
    I am running Mac OS X 10.8.4 (Mountain Lion) and I am trying to open and scroll through a 42 GB .XML file. I plan on using an XML parser to parse through it and delete parts, but first I need to know how the document is structured so I can know what parts to save. How can I open this text / XML file and scroll through it so I can get a glimpse of its structure? I tried my default text-editor, text-mate, and that couldn't open it. I tried gEdit and that shows the first 10 or so lines, but then quits after trying to load the rest. I would greatly appreciate any and all suggestions!

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  • php5-fpm.sock file doesn't exist

    - by Caballero
    I've just compiled and installed PHP-FPM 5.5.5 following this tutorial. I have ignored the apache setup section, because I'm running nginx. Everything seems to be fine: php -v PHP 5.5.5 (cli) (built: Oct 18 2013 21:56:02) Copyright (c) 1997-2013 The PHP Group Zend Engine v2.5.0, Copyright (c) 1998-2013 Zend Technologies Problem is, I need to link it to my nginx conf via a socket, but /var/run/php5-fpm.sock file doesn't exist. How do I create it? The file /etc/php5/fpm/pool.d/www.conf does include the line listen = /var/run/php5-fpm.sock It is possible (though I'm not sure) that it's a leftover of an older php version 5.5.3 which was installed and removed via apt-get. I'm running Ubuntu 13.10 (Saucy Salamander)

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  • Backup strategies for linux based file servers

    - by iceman
    I want to know some enterprise-wide backup strategies used for linux based file servers. What are the tools and techniques used when making a backup. for e.g when a backup fails on a machine, it should email the admin about the failure and also a log file. This won't happen incase the HDD fails and the system is completely out of work, but in other cases where a backup didn't take place, the admin should be able to know. What tool/scripts can be used for this particular scenarios?

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  • Distortion in format of data in wordpad file when shifted from windows XP to winows 2007

    - by Harpreet
    I have many data files which were set to open in wordpad file in windows XP. Those files have a particular format for data, like following: Name of Data file No. of data columns Name of data in column_1 Name of data in column_2 . . . Name of data in column_n column_1 column_2 column_3 ... column_n Now my computer has been formatted and OS is changed to windows 2007, however when I open my data files in wordpad the above format of data is no more present. The format in wordpad in windows 2007 seems to be distorted. Does anyone knows what to do to restore the format as shown above, which is what the data used to look like in XP? I have attached the snap shot of the new distorted format of data as seen in wordpad in windows 2007. The snap shot shows 100 column names, however the data columns present are only 5 when it should be actually 100 data columns.

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