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• How to Make a DVCS Completely Interoperable with Subversion?

  - by David M

  What architectural changes would a DVCS need to be completely interoperable with Subversion? Many DVCSs have some kind of bidirectional interface with Subversion, but there are limitations and caveats. For instance, git-svn can create a repository that mirrors Subversion, and changes to that repo can be sent back to Subversion via 'dcommit'. But the git-svn manpage explicitly cautions against making clones of that repository, so essentially, it's a Subversion working copy that you can use git commands on. Bazaar has a bidirectional Subversion capability too, but its documentation notes that Subversion properties aren't supported at all. Here's the end that I'm pursuing. I want a Subversion repository and a DVCS repository that, in the steady state, have identical content. When something is changed on one, it's automatically mirrored to the other. Subversion users interact with the Subversion repository normally. DVCS users clone the DVCS repository, pull changes from it, and push changes back to it. Most importantly, they don't need to know that this special DVCS repository is associated with a Subversion repository. It would probably be nifty if any clone of the special repository is itself a special repository and could commit directly to Subversion, but it might be sufficient if only the special repository directly interacts with Subversion. I think that's what mostly needed is to improve the bidirectional capability so that changes to Subversion properties are translated to changes in the DVCS repository. Some changes in the DVCS repository would be translated to changes to Subversion properties. Or is the answer to create a new capability in Subversion that interacts with a DVCS repository, using the DVCS repository as just a special storage layer such as fsfs or bdb? If there's not a direct mapping between the things that Subversion and a DVCS regard as having versions, does that imply that there's always going to be some activity that cannot be recorded properly on one or the other?

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• Return a list of important Python modules in a script?

  - by Jono Bacon

  Hi All, I am writing a program that categorizes a list of Python files by which modules they import. As such I need to scan the collection of .py files ad return a list of which modules they import. As an example, if one of the files I import has the following lines: import os import sys, gtk I would like it to return: ["os", "sys", "gtk"] I played with modulefinder and wrote: from modulefinder import ModuleFinder finder = ModuleFinder() finder.run_script('testscript.py') print 'Loaded modules:' for name, mod in finder.modules.iteritems(): print '%s ' % name, but this returns more than just the modules used in the script. As an example in a script which merely has: import os print os.getenv('USERNAME') The modules returned from the ModuleFinder script return: tokenize heapq __future__ copy_reg sre_compile _collections cStringIO _sre functools random cPickle __builtin__ subprocess cmd gc __main__ operator array select _heapq _threading_local abc _bisect posixpath _random os2emxpath tempfile errno pprint binascii token sre_constants re _abcoll collections ntpath threading opcode _struct _warnings math shlex fcntl genericpath stat string warnings UserDict inspect repr struct sys pwd imp getopt readline copy bdb types strop _functools keyword thread StringIO bisect pickle signal traceback difflib marshal linecache itertools dummy_thread posix doctest unittest time sre_parse os pdb dis ...whereas I just want it to return 'os', as that was the module used in the script. Can anyone help me achieve this?

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• Simplest distributed persistent key/value store that supports primary key range queries

  - by StaxMan

  I am looking for a properly distributed (i.e. not just sharded) and persisted (not bounded by available memory on single node, or cluster of nodes) key/value ("nosql") store that does support range queries by primary key. So far closest such system is Cassandra, which does above. However, it adds support for other features that are not essential for me. So while I like it (and will consider using it of course), I am trying to figure out if there might be other mature projects that implement what I need. Specifically, for me the only aspect of value I need is to access it as a blob. For key, however, I need range queries (as in, access values ordered, limited by start and/or end values). While values can have structures, there is no need to use that structure for anything on server side (can do client-side data binding, flexible value/content types etc). For added bonus, Cassandra style storage (journaled, all sequential writes) seems quite optimal for my use case. To help filter out answers, I have investigated some alternatives within general domain like: Voldemort (key/value, but no ordering) and CouchDB (just sharded, more batch-oriented); and am aware of systems that are not quite distributed while otherwise qualifying (bdb variants, tokyo cabinet itself (not sure if Tyrant might qualify), redis (in-memory store only)).

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• ubuntu bind9 AppArmor read permission denied (chroot jail)

  - by Richard Whitman

  I am trying to run bind9 with chroot jail. I followed the steps mentioned at : http://www.howtoforge.com/debian_bind9_master_slave_system I am getting the following errors in my syslog: Jul 27 16:53:49 conf002 named[3988]: starting BIND 9.7.3 -u bind -t /var/lib/named Jul 27 16:53:49 conf002 named[3988]: built with '--prefix=/usr' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--sysconfdir=/etc/bind' '--localstatedir=/var' '--enable-threads' '--enable-largefile' '--with-libtool' '--enable-shared' '--enable-static' '--with-openssl=/usr' '--with-gssapi=/usr' '--with-gnu-ld' '--with-dlz-postgres=no' '--with-dlz-mysql=no' '--with-dlz-bdb=yes' '--with-dlz-filesystem=yes' '--with-dlz-ldap=yes' '--with-dlz-stub=yes' '--with-geoip=/usr' '--enable-ipv6' 'CFLAGS=-fno-strict-aliasing -DDIG_SIGCHASE -O2' 'LDFLAGS=-Wl,-Bsymbolic-functions' 'CPPFLAGS=' Jul 27 16:53:49 conf002 named[3988]: adjusted limit on open files from 4096 to 1048576 Jul 27 16:53:49 conf002 named[3988]: found 4 CPUs, using 4 worker threads Jul 27 16:53:49 conf002 named[3988]: using up to 4096 sockets Jul 27 16:53:49 conf002 named[3988]: loading configuration from '/etc/bind/named.conf' Jul 27 16:53:49 conf002 named[3988]: none:0: open: /etc/bind/named.conf: permission denied Jul 27 16:53:49 conf002 named[3988]: loading configuration: permission denied Jul 27 16:53:49 conf002 named[3988]: exiting (due to fatal error) Jul 27 16:53:49 conf002 kernel: [74323.514875] type=1400 audit(1343433229.352:108): apparmor="DENIED" operation="open" parent=3987 profile="/usr/sbin/named" name="/var/lib/named/etc/bind/named.conf" pid=3992 comm="named" requested_mask="r" denied_mask="r" fsuid=103 ouid=103 Looks like the process can not read the file /var/lib/named/etc/bind/named.conf. I have made sure that the owner of this file is user bind, and it has the read/write access to it: root@test:/var/lib/named/etc/bind# ls -atl total 64 drwxr-xr-x 3 bind bind 4096 2012-07-27 16:35 .. drwxrwsrwx 2 bind bind 4096 2012-07-27 15:26 zones drwxr-sr-x 3 bind bind 4096 2012-07-26 21:36 . -rw-r--r-- 1 bind bind 666 2012-07-26 21:33 named.conf.options -rw-r--r-- 1 bind bind 514 2012-07-26 21:18 named.conf.local -rw-r----- 1 bind bind 77 2012-07-25 00:25 rndc.key -rw-r--r-- 1 bind bind 2544 2011-07-14 06:31 bind.keys -rw-r--r-- 1 bind bind 237 2011-07-14 06:31 db.0 -rw-r--r-- 1 bind bind 271 2011-07-14 06:31 db.127 -rw-r--r-- 1 bind bind 237 2011-07-14 06:31 db.255 -rw-r--r-- 1 bind bind 353 2011-07-14 06:31 db.empty -rw-r--r-- 1 bind bind 270 2011-07-14 06:31 db.local -rw-r--r-- 1 bind bind 2994 2011-07-14 06:31 db.root -rw-r--r-- 1 bind bind 463 2011-07-14 06:31 named.conf -rw-r--r-- 1 bind bind 490 2011-07-14 06:31 named.conf.default-zones -rw-r--r-- 1 bind bind 1317 2011-07-14 06:31 zones.rfc1918 What could be wrong here?

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• Installing OpenLDAP on Fedora 12: ldap_bind: Invalid credentials (49)

  - by Arcturus

  Hello. I've been trying to set up the OpenLDAP installed by default on Fedora 12, very unsuccessfully. My ultimate goal is to use LDAP authentication for user login and Apache, using the OpenLDAP server running on the same machine. The server is running, but the error I always get when I try to use ldapsearch or ldapadd is: ldap_bind: Invalid credentials (49) I've been following these tutorials, but none of them helped me: http://www.howtoforge.com/openldap_fedora7 http://www.redhat.com/docs/manuals/linux/RHL-9-Manual/ref-guide/s1-ldap-quickstart.html http://www.howtoforge.com/linux_ldap_authentication http://docs.fedoraproject.org/deployment-guide/f12/en-US/html/s1-ldap-pam.html http://www.openldap.org/doc/admin24/quickstart.html First, some components were already installed, and I installed these with yum: yum install openldap-servers openldap-devel Then, I created a basic slapd.conf file in /etc/openldap: database bdb suffix "dc=sniejana-sandbox,dc=com" rootdn "cn=root,dc=sniejana-sandbox,dc=com" rootpw {SSHA}cxdz55ygPu4T3ykg7dgu+L0VRvsFSeom directory /var/lib/ldap/sniejana-sandbox.com I obtained the rootpw with this command: slappasswd -s changeme I also created the /var/lib/ldap/sniejana-sandbox.com directory and made sure the entire contents of /var/lib/ldap were owned by the ldap user. I found two ldap.conf files, one in /etc and one in /etc/openldap. I don't know which is the right one. If I understood correctly, this file is to configure the client. I put this in both: HOST localhost BASE dc=sniejana-sandbox,dc=com I then ran the server with: service slapd start It said OK. Most of the tutorials above say to use the command ldapsearch -D "cn=Manager,dc=my-domain,dc=com" -W to ensure that everything's working. When I execute this command, a password prompt appears, and after entering the password, I get the error. ldapsearch -D "cn=root,dc=sniejana-sandbox,dc=com" -W Enter LDAP password: ldap_bind: Invalid credentials (49) The same thing happens when trying to use ldapadd. I tried with an encrypted and unencrypted password in slapd.conf, it doesn't change anything. Adding a -x for simple authentication doesn't change anything either. netstat -ap confirms the server is listening: tcp 0 0 *:ldap *:* LISTEN 4148/slapd tcp 0 0 *:ldap *:* LISTEN 4148/slapd ps -ef|grep slapd confirms the process is running: ldap 4148 1 0 15:22 ? 00:00:00 /usr/sbin/slapd -h ldap:/// -u ldap Running slaptest procudes config file testing succeeded. I read somewhere that the command ldapsearch -x -b '' -s base '(objectclass=*)' namingContext can confirm the server is running. It appears to work: # extended LDIF # # LDAPv3 # base <> with scope baseObject # filter: (objectclass=*) # requesting: namingContext # # dn: # search result search: 2 result: 0 Success # numResponses: 2 # numEntries: 1 I'm running out of ideas. Am I missing something obvious?

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• Installing OpenLDAP on Fedora 12: ldap_bind: Invalid credentials (49)

  - by Alpha Hydrae

  I've been trying to set up the OpenLDAP installed by default on Fedora 12, very unsuccessfully. My ultimate goal is to use LDAP authentication for user login and Apache, using the OpenLDAP server running on the same machine. The server is running, but the error I always get when I try to use ldapsearch or ldapadd is: ldap_bind: Invalid credentials (49) I've been following these tutorials, but none of them helped me: http://www.howtoforge.com/openldap_fedora7 http://www.redhat.com/docs/manuals/linux/RHL-9-Manual/ref-guide/s1-ldap-quickstart.html http://www.howtoforge.com/linux_ldap_authentication http://docs.fedoraproject.org/deployment-guide/f12/en-US/html/s1-ldap-pam.html http://www.openldap.org/doc/admin24/quickstart.html First, some components were already installed, and I installed these with yum: yum install openldap-servers openldap-devel Then, I created a basic slapd.conf file in /etc/openldap: database bdb suffix "dc=sniejana-sandbox,dc=com" rootdn "cn=root,dc=sniejana-sandbox,dc=com" rootpw {SSHA}cxdz55ygPu4T3ykg7dgu+L0VRvsFSeom directory /var/lib/ldap/sniejana-sandbox.com I obtained the rootpw with this command: slappasswd -s changeme I also created the /var/lib/ldap/sniejana-sandbox.com directory and made sure the entire contents of /var/lib/ldap were owned by the ldap user. I found two ldap.conf files, one in /etc and one in /etc/openldap. I don't know which is the right one. If I understood correctly, this file is to configure the client. I put this in both: HOST localhost BASE dc=sniejana-sandbox,dc=com I then ran the server with: service slapd start It said OK. Most of the tutorials above say to use the command ldapsearch -D "cn=Manager,dc=my-domain,dc=com" -W to ensure that everything's working. When I execute this command, a password prompt appears, and after entering the password, I get the error. ldapsearch -D "cn=root,dc=sniejana-sandbox,dc=com" -W Enter LDAP password: ldap_bind: Invalid credentials (49) The same thing happens when trying to use ldapadd. I tried with an encrypted and unencrypted password in slapd.conf, it doesn't change anything. Adding a -x for simple authentication doesn't change anything either. netstat -ap confirms the server is listening: tcp 0 0 *:ldap *:* LISTEN 4148/slapd tcp 0 0 *:ldap *:* LISTEN 4148/slapd ps -ef|grep slapd confirms the process is running: ldap 4148 1 0 15:22 ? 00:00:00 /usr/sbin/slapd -h ldap:/// -u ldap Running slaptest procudes config file testing succeeded. I read somewhere that the command ldapsearch -x -b '' -s base '(objectclass=*)' namingContext can confirm the server is running. It appears to work: # extended LDIF # # LDAPv3 # base <> with scope baseObject # filter: (objectclass=*) # requesting: namingContext # # dn: # search result search: 2 result: 0 Success # numResponses: 2 # numEntries: 1 I'm running out of ideas. Am I missing something obvious?

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• Installing OpenLDAP: ldap_bind: Invalid credentials (49)

  - by Arcturus

  Hello. I've been trying to set up the OpenLDAP installed by default on Fedora 12, very unsuccessfully. My ultimate goal is to use LDAP authentication for user login and Apache, using the OpenLDAP server running on the same machine. The server is running, but the error I always get when I try to use ldapsearch or ldapadd is: ldap_bind: Invalid credentials (49) I've been following these tutorials, but none of them helped me: http://www.howtoforge.com/openldap_fedora7 http://www.redhat.com/docs/manuals/linux/RHL-9-Manual/ref-guide/s1-ldap-quickstart.html http://www.howtoforge.com/linux_ldap_authentication http://docs.fedoraproject.org/deployment-guide/f12/en-US/html/s1-ldap-pam.html http://www.openldap.org/doc/admin24/quickstart.html First, some components were already installed, and I installed these with yum: yum install openldap-servers openldap-devel Then, I created a basic slapd.conf file in /etc/openldap: database bdb suffix "dc=sniejana-sandbox,dc=com" rootdn "cn=root,dc=sniejana-sandbox,dc=com" rootpw {SSHA}cxdz55ygPu4T3ykg7dgu+L0VRvsFSeom directory /var/lib/ldap/sniejana-sandbox.com I obtained the rootpw with this command: slappasswd -s changeme I also created the /var/lib/ldap/sniejana-sandbox.com directory and made sure the entire contents of /var/lib/ldap were owned by the ldap user. I found two ldap.conf files, one in /etc and one in /etc/openldap. I don't know which is the right one. If I understood correctly, this file is to configure the client. I put this in both: HOST localhost BASE dc=sniejana-sandbox,dc=com I then ran the server with: service slapd start It said OK. Most of the tutorials above say to use the command ldapsearch -D "cn=Manager,dc=my-domain,dc=com" -W to ensure that everything's working. When I execute this command, a password prompt appears, and after entering the password, I get the error. ldapsearch -D "cn=root,dc=sniejana-sandbox,dc=com" -W Enter LDAP password: ldap_bind: Invalid credentials (49) The same thing happens when trying to use ldapadd. I tried with an encrypted and unencrypted password in slapd.conf, it doesn't change anything. Adding a -x for simple authentication doesn't change anything either. netstat -ap confirms the server is listening: tcp 0 0 *:ldap *:* LISTEN 4148/slapd tcp 0 0 *:ldap *:* LISTEN 4148/slapd ps -ef|grep slapd confirms the process is running: ldap 4148 1 0 15:22 ? 00:00:00 /usr/sbin/slapd -h ldap:/// -u ldap Running slaptest procudes config file testing succeeded. I read somewhere that the command ldapsearch -x -b '' -s base '(objectclass=*)' namingContext can confirm the server is running. It appears to work: # extended LDIF # # LDAPv3 # base <> with scope baseObject # filter: (objectclass=*) # requesting: namingContext # # dn: # search result search: 2 result: 0 Success # numResponses: 2 # numEntries: 1 I'm running out of ideas. Am I missing something obvious?

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• PHP versions warning on Plesk 11.0.9 upgrade on CentOS server

  - by Pixman

  I have a server turning on Plesk 10.4.4 and I want to upgrade it to 11.0.9. When I use the online upgrade tool, I have this warning: Parallels Panel pre-upgrade check... WARNING: You have a mixed set of 'php' and 'php53' packages installed. Installation or upgrade may fail or produce unexpected results. To resolve this issue run "sed -i.bak -e '/^\s*skip-bdb\s*$/d' /etc/my.cnf ; yum update 'php*' 'mysql*'". PHP Warning: Directive 'safe_mode' is deprecated in PHP 5.3 and greater in Unknown on line 0 I have run the code in ssh, but nothing changes. I have already searched all package names with "php", and I have this list: # yum list installed | grep php php-common.i386 5.3.13-5.el5.art installed php-pear.noarch 1:1.4.9-8.el5 installed php5-ioncube-loader.i386 4.0.7-11062118 installed php53.i386 5.3.3-13.el5_8 installed php53-cli.i386 5.3.3-13.el5_8 installed php53-devel.i386 5.3.3-13.el5_8 installed php53-gd.i386 5.3.3-13.el5_8 installed php53-imap.i386 5.3.3-13.el5_8 installed php53-mbstring.i386 5.3.3-13.el5_8 installed php53-mcrypt.i386 5.3.3-1.el5 installed php53-mysql.i386 5.3.3-13.el5_8 installed php53-pdo.i386 5.3.3-13.el5_8 installed php53-sqlite2.i386 5.3.2-11041315 installed php53-xml.i386 5.3.3-13.el5_8 installed psa-appvault-phpads.noarch 2.0.8-8203520080409011611 installed psa-appvault-phpbb.noarch 3.0.0-8200820080409011626 installed psa-appvault-phpbook.noarch 1.50-8203220080409011638 installed psa-appvault-phpbugtracker.noarch 1.19-8203820080416050605 installed psa-appvault-phpdig.noarch 1.85-8203120080409011645 installed psa-appvault-phpmoney.noarch 1.3-8204320080409011649 installed psa-appvault-phpmyfamily.noarch 1.4.1-8203420080409011655 installed psa-appvault-phpmyvisites.noarch 2.3-8202820080409011701 installed psa-appvault-phprojekt.noarch 5.2-8200820080409011713 installed psa-appvault-phpsurveyor.noarch 0.98-8204320080409011723 installed psa-appvault-phpwebsite.noarch 0.10.2-8203420080409011738 installed psa-appvault-phpwiki.noarch 1.3.11-8204320080409011808 installed psa-php53-configurator.i386 1.6.1-cos5.build1013111101.14 installed After verification in the Plesk file: panel_preupgrade_checker.php I think the warning is due to these lines: (from : panel_preupgrade_checker.php) foreach ($packages as $package) { $name = $package['name']; $hasPhp5 |= ($name == 'php' || strpos($name, 'php-') === 0); $hasPhp53 |= (strpos($name, 'php53') === 0); } Now, I think the problem is just due to the names of theses packages: php-common.i386 5.3.13-5.el5.art installed php-pear.noarch 1:1.4.9-8.el5 installed Can you help me to resolve this situation?

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• High Load mysql on Debian server

  - by Oleg Abrazhaev

  I have Debian server with 32 gb memory. And there is apache2, memcached and nginx on this server. Memory load always on maximum. Only 500m free. Most memory leak do MySql. Apache only 70 clients configured, other services small memory usage. When mysql use all memory it stops. And nothing works, need mysql reboot. Mysql configured use maximum 24 gb memory. I have hight weight InnoDB bases. (400000 rows, 30 gb). And on server multithread daemon, that makes many inserts in this tables, thats why InnoDB. There is my mysql config. [mysqld] # # * Basic Settings # default-time-zone = "+04:00" user = mysql pid-file = /var/run/mysqld/mysqld.pid socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp language = /usr/share/mysql/english skip-external-locking default-time-zone='Europe/Moscow' # # Instead of skip-networking the default is now to listen only on # localhost which is more compatible and is not less secure. # # * Fine Tuning # #low_priority_updates = 1 concurrent_insert = ALWAYS wait_timeout = 600 interactive_timeout = 600 #normal key_buffer_size = 2024M #key_buffer_size = 1512M #70% hot cache key_cache_division_limit= 70 #16-32 max_allowed_packet = 32M #1-16M thread_stack = 8M #40-50 thread_cache_size = 50 #orderby groupby sort sort_buffer_size = 64M #same myisam_sort_buffer_size = 400M #temp table creates when group_by tmp_table_size = 3000M #tables in memory max_heap_table_size = 3000M #on disk open_files_limit = 10000 table_cache = 10000 join_buffer_size = 5M # This replaces the startup script and checks MyISAM tables if needed # the first time they are touched myisam-recover = BACKUP #myisam_use_mmap = 1 max_connections = 200 thread_concurrency = 8 # # * Query Cache Configuration # #more ignored query_cache_limit = 50M query_cache_size = 210M #on query cache query_cache_type = 1 # # * Logging and Replication # # Both location gets rotated by the cronjob. # Be aware that this log type is a performance killer. #log = /var/log/mysql/mysql.log # # Error logging goes to syslog. This is a Debian improvement :) # # Here you can see queries with especially long duration log_slow_queries = /var/log/mysql/mysql-slow.log long_query_time = 1 log-queries-not-using-indexes # # The following can be used as easy to replay backup logs or for replication. # note: if you are setting up a replication slave, see README.Debian about # other settings you may need to change. #server-id = 1 #log_bin = /var/log/mysql/mysql-bin.log server-id = 1 log-bin = /var/lib/mysql/mysql-bin #replicate-do-db = gate log-bin-index = /var/lib/mysql/mysql-bin.index log-error = /var/lib/mysql/mysql-bin.err relay-log = /var/lib/mysql/relay-bin relay-log-info-file = /var/lib/mysql/relay-bin.info relay-log-index = /var/lib/mysql/relay-bin.index binlog_do_db = 24avia expire_logs_days = 10 max_binlog_size = 100M read_buffer_size = 4024288 innodb_buffer_pool_size = 5000M innodb_flush_log_at_trx_commit = 2 innodb_thread_concurrency = 8 table_definition_cache = 2000 group_concat_max_len = 16M #binlog_do_db = gate #binlog_ignore_db = include_database_name # # * BerkeleyDB # # Using BerkeleyDB is now discouraged as its support will cease in 5.1.12. #skip-bdb # # * InnoDB # # InnoDB is enabled by default with a 10MB datafile in /var/lib/mysql/. # Read the manual for more InnoDB related options. There are many! # You might want to disable InnoDB to shrink the mysqld process by circa 100MB. #skip-innodb # # * Security Features # # Read the manual, too, if you want chroot! # chroot = /var/lib/mysql/ # # For generating SSL certificates I recommend the OpenSSL GUI "tinyca". # # ssl-ca=/etc/mysql/cacert.pem # ssl-cert=/etc/mysql/server-cert.pem # ssl-key=/etc/mysql/server-key.pem [mysqldump] quick quote-names max_allowed_packet = 500M [mysql] #no-auto-rehash # faster start of mysql but no tab completition [isamchk] key_buffer = 32M key_buffer_size = 512M # # * NDB Cluster # # See /usr/share/doc/mysql-server-*/README.Debian for more information. # # The following configuration is read by the NDB Data Nodes (ndbd processes) # not from the NDB Management Nodes (ndb_mgmd processes). # # [MYSQL_CLUSTER] # ndb-connectstring=127.0.0.1 # # * IMPORTANT: Additional settings that can override those from this file! # The files must end with '.cnf', otherwise they'll be ignored. # !includedir /etc/mysql/conf.d/ Please, help me make it stable. Memory used /etc/mysql # free total used free shared buffers cached Mem: 32930800 32766424 164376 0 139208 23829196 -/+ buffers/cache: 8798020 24132780 Swap: 33553328 44660 33508668 Maybe my problem not in memory, but MySQL stops every day. As you can see, cache memory free 24 gb. Thank to Michael Hampton? for correction. Load overage on server 3.5. Maybe hdd or another problem? Maybe my config not optimal for 30gb InnoDB ?

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• CPU Utilization LAMP stack

  - by Max

  We've got an ec2 m2.4xlarge running Magento (centos 5.6, httpd 2.2, php 5.2.17 with eaccelerator 0.9.5.3, mysql 5.1.52). Right now we're getting a large traffic spike, and our top looks like this: top - 09:41:29 up 31 days, 1:12, 1 user, load average: 120.01, 129.03, 113.23 Tasks: 1190 total, 18 running, 1172 sleeping, 0 stopped, 0 zombie Cpu(s): 97.3%us, 1.8%sy, 0.0%ni, 0.5%id, 0.0%wa, 0.0%hi, 0.0%si, 0.4%st Mem: 71687720k total, 36898928k used, 34788792k free, 49692k buffers Swap: 880737784k total, 0k used, 880737784k free, 1586524k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 2433 mysql 15 0 23.6g 4.5g 7112 S 564.7 6.6 33607:34 mysqld 24046 apache 16 0 411m 65m 28m S 26.4 0.1 0:09.05 httpd 24360 apache 15 0 410m 60m 25m S 26.4 0.1 0:03.65 httpd 24993 apache 16 0 410m 57m 21m S 26.1 0.1 0:01.41 httpd 24838 apache 16 0 428m 74m 20m S 24.8 0.1 0:02.37 httpd 24359 apache 16 0 411m 62m 26m R 22.3 0.1 0:08.12 httpd 23850 apache 15 0 411m 64m 27m S 16.8 0.1 0:14.54 httpd 25229 apache 16 0 404m 46m 17m R 10.2 0.1 0:00.71 httpd 14594 apache 15 0 404m 63m 34m S 8.4 0.1 1:10.26 httpd 24955 apache 16 0 404m 50m 21m R 8.4 0.1 0:01.66 httpd 24313 apache 16 0 399m 46m 22m R 8.1 0.1 0:02.30 httpd 25119 apache 16 0 411m 59m 23m S 6.8 0.1 0:01.45 httpd Questions: Would giving msyqld more memory help it cache queries and react faster? If so, how? Other than splitting mysql and php to separate servers (which we're about to do) is there anything else we could/should be doing? Thanks! UPDATE: Here's our my.cnf along with the output of mysqltuner. It looks like a cache problem. Thanks again! # cat /etc/my.cnf [client] port = **** socket = /var/lib/mysql/mysql.sock [mysqld] datadir=/mnt/persistent/mysql port=**** socket=/var/lib/mysql/mysql.sock key_buffer = 512M max_allowed_packet = 64M table_cache = 1024 sort_buffer_size = 8M read_buffer_size = 4M read_rnd_buffer_size = 2M myisam_sort_buffer_size = 64M thread_cache_size = 128M tmp_table_size = 128M join_buffer_size = 1M query_cache_limit = 2M query_cache_size= 64M query_cache_type = 1 max_connections = 1000 thread_stack = 128K thread_concurrency = 48 log-bin=mysql-bin server-id = 1 wait_timeout = 300 innodb_data_home_dir = /mnt/persistent/mysql/ innodb_data_file_path = ibdata1:10M:autoextend innodb_buffer_pool_size = 20G innodb_additional_mem_pool_size = 20M innodb_log_file_size = 64M innodb_log_buffer_size = 8M innodb_flush_log_at_trx_commit = 1 innodb_lock_wait_timeout = 50 innodb_thread_concurrency = 48 ft_min_word_len=3 [myisamchk] ft_min_word_len=3 key_buffer = 128M sort_buffer_size = 128M read_buffer = 2M write_buffer = 2M # ./mysqltuner.pl >> MySQLTuner 1.2.0 - Major Hayden <[email protected]> >> Bug reports, feature requests, and downloads at http://mysqltuner.com/ >> Run with '--help' for additional options and output filtering -------- General Statistics -------------------------------------------------- [--] Skipped version check for MySQLTuner script [OK] Currently running supported MySQL version 5.1.52-log [OK] Operating on 64-bit architecture -------- Storage Engine Statistics ------------------------------------------- [--] Status: +Archive -BDB +Federated +InnoDB -ISAM -NDBCluster [--] Data in MyISAM tables: 2G (Tables: 26) [--] Data in InnoDB tables: 749M (Tables: 250) [!!] Total fragmented tables: 262 -------- Security Recommendations ------------------------------------------- -------- Performance Metrics ------------------------------------------------- [--] Up for: 31d 2h 30m 38s (680M q [253.371 qps], 2M conn, TX: 4825B, RX: 236B) [--] Reads / Writes: 89% / 11% [--] Total buffers: 20.6G global + 15.1M per thread (1000 max threads) [OK] Maximum possible memory usage: 35.4G (51% of installed RAM) [OK] Slow queries: 0% (35K/680M) [OK] Highest usage of available connections: 53% (537/1000) [OK] Key buffer size / total MyISAM indexes: 512.0M/457.2M [OK] Key buffer hit rate: 100.0% (9B cached / 264K reads) [OK] Query cache efficiency: 42.3% (260M cached / 615M selects) [!!] Query cache prunes per day: 4384652 [OK] Sorts requiring temporary tables: 0% (1K temp sorts / 38M sorts) [!!] Joins performed without indexes: 100404 [OK] Temporary tables created on disk: 17% (7M on disk / 45M total) [OK] Thread cache hit rate: 99% (537 created / 2M connections) [!!] Table cache hit rate: 0% (1K open / 946K opened) [OK] Open file limit used: 9% (453/5K) [OK] Table locks acquired immediately: 99% (758M immediate / 758M locks) [OK] InnoDB data size / buffer pool: 749.3M/20.0G -------- Recommendations ----------------------------------------------------- General recommendations: Run OPTIMIZE TABLE to defragment tables for better performance Enable the slow query log to troubleshoot bad queries Adjust your join queries to always utilize indexes Increase table_cache gradually to avoid file descriptor limits Variables to adjust: query_cache_size (> 64M) join_buffer_size (> 1.0M, or always use indexes with joins) table_cache (> 1024)

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• VPS 512 MB RAM with WordPressMU comes to consumes lots of memory

  - by CAPitalZ

  I have googled for days and gathered all optimization suggestions and tried. My sites are not getting any high hits. May be like 100 hits per day [all my sites combined]. Here are my specs I have 512 MB RAM VPS with burstable 1024 MB. Centos 5 32-bit & cPanel/WHM Apache 2.2 MySQL 5.0 PHP 5.3.2 Here is my Configs I have 2 WordPressMU production sites, and 1 test site my.cnf # The following options will be passed to all MySQL clients [client] #password = your_password port = 3306 socket = /var/lib/mysql/mysql.sock # Here follows entries for some specific programs # The MySQL server [mysqld] port = 3306 socket = /var/lib/mysql/mysql.sock skip-locking skip-bdb skip-innodb key_buffer = 16M max_allowed_packet = 1M table_cache = 64 sort_buffer_size = 512K net_buffer_length = 8K read_buffer_size = 256K read_rnd_buffer_size = 512K myisam_sort_buffer_size = 8M #CAPitalZ thread_cache_size=8 thread_concurrency=4 #query_cache_type=1 #query_cache_limit=1M query_cache_size=16M concurrent_insert=2 low_priority_updates=1 max_connections=50 tmp_table_size=16M max_heap_table_size=16M join_buffer_size=1M interactive_timeout=25 wait_timeout=1000 #connect_timout=10 not able to restart mysql max_connect_errors=10 # Don't listen on a TCP/IP port at all. This can be a security enhancement, # if all processes that need to connect to mysqld run on the same host. # All interaction with mysqld must be made via Unix sockets or named pipes. # Note that using this option without enabling named pipes on Windows # (via the "enable-named-pipe" option) will render mysqld useless! # skip-networking # Disable Federated by default skip-federated # Replication Master Server (default) # binary logging is required for replication log-bin=mysql-bin # required unique id between 1 and 2^32 - 1 # defaults to 1 if master-host is not set # but will not function as a master if omitted server-id = 1 [mysqld_safe] open_files_limit=8192 [mysqldump] quick max_allowed_packet = 16M [mysql] no-auto-rehash # Remove the next comment character if you are not familiar with SQL #safe-updates [isamchk] key_buffer = 20M sort_buffer_size = 20M read_buffer = 2M write_buffer = 2M [myisamchk] key_buffer = 20M sort_buffer_size = 20M read_buffer = 2M write_buffer = 2M [mysqlhotcopy] interactive-timeout httpd.conf I have unselected many modules and recompiled using EasyApache in WHM. Only have the following modules built Deflate Expires Fileprotect Imagemap MPM Prefork Version [default] EAccelerator for PHP Bcmath Calendar CurlSSL [I'm using Curl. But I don't have any https sites] Expat GD [for image cropping] Gettext Imap Mbregex [default] Mbstring [need both Mbregex and Mbstring for utf-8] Mysql of the system MySQL "Improved" extension. Sockets TTF (FreeType) [I'm using custom font] Zlib Under Global Configuration I only have FollowSymLinks enabled I Have TraceEnable, ServerSignature, FileETag OFF ServerTokens ProductOnly DirectoryIndex Priority has index.php as the first one I have removed Clamd [Clam Anti-virus] SpamAssasin is Off Under Tweak Settings Default catch-all/default address behavior for new accounts. This is set to "fail" All stats programs turned off I have eAccelerator installed and checked in phpinfo and its working [Pre VirtualHost Include under WHM] Timeout 20 KeepAlive On MaxKeepAliveRequests 200 KeepAliveTimeout 3 MinSpareServers 1 MaxSpareServers 3 StartServers 1 ServerLimit 50 MaxClients 50 MaxRequestsPerChild 4000 ExtendedStatus Off #ServerType standalone this throws error HostnameLookups Off <Directory "/"> AllowOverride None </Directory> My sites will take ages to load and WHM/CPanel will not even load. adadaa.com/ http://adadaa.net/ kadais.ca/ My average memory consumption is like 1000 MB! [yes always bursting] The process that consumes most CPU and also most memory is mysql But I also get like 15 httpd processes [when its bursting] I already got warning from cpuwatchcheck saying "While processing, the cpu has been maxed out for more than a 6 hour period. The current load/uptime line on the server at the time of this email is 07:00:37 up 11:30, 0 users, load average: 14.64, 16.79, 20.07" I don't know, I have tried switching these config values many different times, but nothing seems to work. Please show some light... Thanks

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• MySQL reserves too much RAM

  - by Buddy

  I have a cheap VPS with 128Mb RAM and 256Mb burst. MySQL starts and reserves about 110Mb, but uses not more than 20Mb of them. My VPS Control Panel shows, that I use 127Mb (I also running nginx and sphinx), I know, that it shows reserved RAM, but when I reach over 128Mb, my VPS reboots automatically every 4 hours. So I want to force MySQL to reserve less RAM. How can i do that? I did some tweaks with my.conf but it helped not so much. top output: PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1 root 15 0 2156 668 572 S 0.0 0.3 0:00.03 init 11311 root 15 0 11212 356 228 S 0.0 0.1 0:00.00 vzctl 11312 root 18 0 3712 1484 1248 S 0.0 0.6 0:00.01 bash 11347 root 18 0 2284 916 732 R 0.0 0.3 0:00.00 top 13978 root 17 -4 2248 552 344 S 0.0 0.2 0:00.00 udevd 14262 root 15 0 1812 564 472 S 0.0 0.2 0:00.03 syslogd 14293 sphinx 15 0 11816 1172 672 S 0.0 0.4 0:00.07 searchd 14305 root 25 0 7192 1036 636 S 0.0 0.4 0:00.00 sshd 14321 root 25 0 2832 836 668 S 0.0 0.3 0:00.00 xinetd 15389 root 18 0 3708 1300 1132 S 0.0 0.5 0:00.00 mysqld_safe 15441 mysql 15 0 113m 16m 4440 S 0.0 6.4 0:00.15 mysqld 15489 root 21 0 13056 1456 340 S 0.0 0.6 0:00.00 nginx 15490 nginx 18 0 13328 2388 992 S 0.0 0.9 0:00.06 nginx 15507 nginx 25 0 19520 5888 4244 S 0.0 2.2 0:00.00 php-cgi 15508 nginx 18 0 19636 4876 2748 S 0.0 1.9 0:00.12 php-cgi 15509 nginx 15 0 19668 4872 2716 S 0.0 1.9 0:00.11 php-cgi 15518 root 18 0 4492 1116 568 S 0.0 0.4 0:00.01 crond MySQL tuner: >> MySQLTuner 1.0.1 - Major Hayden <[email protected]> >> Bug reports, feature requests, and downloads at http://mysqltuner.com/ >> Run with '--help' for additional options and output filtering Please enter your MySQL administrative login: root Please enter your MySQL administrative password: -------- General Statistics -------------------------------------------------- [--] Skipped version check for MySQLTuner script [OK] Currently running supported MySQL version 5.0.77 [OK] Operating on 32-bit architecture with less than 2GB RAM -------- Storage Engine Statistics ------------------------------------------- [--] Status: -Archive -BDB -Federated +InnoDB -ISAM -NDBCluster [--] Data in InnoDB tables: 1M (Tables: 1) [OK] Total fragmented tables: 0 -------- Performance Metrics ------------------------------------------------- [--] Up for: 38m 43s (37 q [0.016 qps], 20 conn, TX: 4M, RX: 3K) [--] Reads / Writes: 100% / 0% [--] Total buffers: 28.1M global + 832.0K per thread (100 max threads) [OK] Maximum possible memory usage: 109.4M (42% of installed RAM) [OK] Slow queries: 0% (0/37) [OK] Highest usage of available connections: 1% (1/100) [OK] Key buffer size / total MyISAM indexes: 128.0K/64.0K [OK] Query cache efficiency: 42.1% (8 cached / 19 selects) [OK] Query cache prunes per day: 0 [!!] Temporary tables created on disk: 27% (3 on disk / 11 total) [!!] Thread cache is disabled [OK] Table cache hit rate: 57% (8 open / 14 opened) [OK] Open file limit used: 1% (12/1K) [OK] Table locks acquired immediately: 100% (22 immediate / 22 locks) [!!] Connections aborted: 10% [OK] InnoDB data size / buffer pool: 1.5M/8.0M -------- Recommendations ----------------------------------------------------- General recommendations: MySQL started within last 24 hours - recommendations may be inaccurate Enable the slow query log to troubleshoot bad queries When making adjustments, make tmp_table_size/max_heap_table_size equal Reduce your SELECT DISTINCT queries without LIMIT clauses Set thread_cache_size to 4 as a starting value Your applications are not closing MySQL connections properly Variables to adjust: tmp_table_size (> 32M) max_heap_table_size (> 16M) thread_cache_size (start at 4) I think if I do what MySQLtuner says, MySQL will use more RAM.

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• need assistance with my.cnf - 1500% CPU usage

  - by Alan Long

  I'm running into a few issues with our new database server. It is a HP G8 with 2 INTEL XEON E5-2650 processors and 32GB of ram. This server is dedicated as a MySQL server (5.1.69) for our intranet portal. I have been having issues with this server staying alive - I notice high CPU usage during certain times of day (8% ~ 1500%+) and see very low memory usage (7 ~ 15%) based on using the 'top' command. When the CPU usage passes 1000%, that is when the app usually dies. I'm trying to see what I'm doing wrong with the config file, hopefully one of the experts can chime in and let me know what they think. See below for my.cnf file: [mysqld] default-storage-engine=InnoDB datadir=/var/lib/mysql socket=/var/lib/mysql/mysql.sock #user=mysql large-pages # Disabling symbolic-links is recommended to prevent assorted security risks symbolic-links=0 max_connections=275 tmp_table_size=1G key_buffer_size=384M key_buffer=384M thread_cache_size=1024 long_query_time=5 low_priority_updates=1 max_heap_table_size=1G myisam_sort_buffer_size=8M concurrent_insert=2 table_cache=1024 sort_buffer_size=8M read_buffer_size=5M read_rnd_buffer_size=6M join_buffer_size=16M table_definition_cache=6k open_files_limit=8k slow_query_log #skip-name-resolve # Innodb Settings innodb_buffer_pool_size=18G innodb_thread_concurrency=0 innodb_log_file_size=1G innodb_log_buffer_size=16M innodb_flush_log_at_trx_commit=2 innodb_lock_wait_timeout=50 innodb_file_per_table #innodb_buffer_pool_instances=4 #eliminating double buffering innodb_flush_method = O_DIRECT flush_time=86400 innodb_additional_mem_pool_size=40M #innodb_io_capacity = 5000 #innodb_read_io_threads = 64 #innodb_write_io_threads = 64 # increase until threads_created doesnt grow anymore thread_cache=1024 query_cache_type=1 query_cache_limit=4M query_cache_size=256M # Try number of CPU's*2 for thread_concurrency thread_concurrency = 0 wait_timeout = 1800 connect_timeout = 10 interactive_timeout = 60 [mysqldump] max_allowed_packet=32M [mysqld_safe] log-error=/var/log/mysqld.log pid-file=/var/run/mysqld/mysqld.pid log-slow-queries=/var/log/mysql/slow-queries.log long_query_time = 1 log-queries-not-using-indexes we connect to one database with 75 tables, the largest table has 1,150,000 entries and the second largest has 128,036 entries. I have also verified that our PHP queries are optimized as best as possible. Reference - MySQLtuner: >> MySQLTuner 1.2.0 - Major Hayden <[email protected]> >> Bug reports, feature requests, and downloads at http://mysqltuner.com/ >> Run with '--help' for additional options and output filtering -------- General Statistics -------------------------------------------------- [--] Skipped version check for MySQLTuner script [OK] Currently running supported MySQL version 5.1.69-log [OK] Operating on 64-bit architecture -------- Storage Engine Statistics ------------------------------------------- [--] Status: -Archive -BDB -Federated +InnoDB -ISAM -NDBCluster [--] Data in InnoDB tables: 420M (Tables: 75) [!!] Total fragmented tables: 75 -------- Security Recommendations ------------------------------------------- [!!] User '[email protected]' has no password set. -------- Performance Metrics ------------------------------------------------- [--] Up for: 1h 14m 50s (8M q [1K qps], 705 conn, TX: 6B, RX: 892M) [--] Reads / Writes: 68% / 32% [--] Total buffers: 19.7G global + 35.2M per thread (275 max threads) [!!] Maximum possible memory usage: 29.1G (93% of installed RAM) [OK] Slow queries: 0% (472/8M) [OK] Highest usage of available connections: 66% (183/275) [OK] Key buffer size / total MyISAM indexes: 384.0M/91.0K [OK] Key buffer hit rate: 100.0% (173 cached / 0 reads) [OK] Query cache efficiency: 96.2% (7M cached / 7M selects) [!!] Query cache prunes per day: 553614 [OK] Sorts requiring temporary tables: 0% (3 temp sorts / 1K sorts) [!!] Temporary tables created on disk: 49% (3K on disk / 7K total) [OK] Thread cache hit rate: 74% (183 created / 705 connections) [OK] Table cache hit rate: 97% (231 open / 238 opened) [OK] Open file limit used: 0% (17/8K) [OK] Table locks acquired immediately: 100% (432K immediate / 432K locks) [OK] InnoDB data size / buffer pool: 420.9M/18.0G -------- Recommendations ----------------------------------------------------- General recommendations: Run OPTIMIZE TABLE to defragment tables for better performance MySQL started within last 24 hours - recommendations may be inaccurate Reduce your overall MySQL memory footprint for system stability Increasing the query_cache size over 128M may reduce performance Temporary table size is already large - reduce result set size Reduce your SELECT DISTINCT queries without LIMIT clauses Variables to adjust: *** MySQL's maximum memory usage is dangerously high *** *** Add RAM before increasing MySQL buffer variables *** query_cache_size (> 256M) [see warning above] Thanks in advanced for your help!

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• Optimizing MySQL for small VPS

  - by Chris M

  I'm trying to optimize my MySQL config for a verrry small VPS. The VPS is also running NGINX/PHP-FPM and Magento; all with a limit of 250MB of RAM. This is an output of MySQL Tuner... -------- General Statistics -------------------------------------------------- [--] Skipped version check for MySQLTuner script [OK] Currently running supported MySQL version 5.1.41-3ubuntu12.8 [OK] Operating on 64-bit architecture -------- Storage Engine Statistics ------------------------------------------- [--] Status: -Archive -BDB -Federated +InnoDB -ISAM -NDBCluster [--] Data in MyISAM tables: 1M (Tables: 14) [--] Data in InnoDB tables: 29M (Tables: 301) [--] Data in MEMORY tables: 1M (Tables: 17) [!!] Total fragmented tables: 301 -------- Security Recommendations ------------------------------------------- [OK] All database users have passwords assigned -------- Performance Metrics ------------------------------------------------- [--] Up for: 2d 11h 14m 58s (1M q [8.038 qps], 33K conn, TX: 2B, RX: 618M) [--] Reads / Writes: 83% / 17% [--] Total buffers: 122.0M global + 8.6M per thread (100 max threads) [!!] Maximum possible memory usage: 978.2M (404% of installed RAM) [OK] Slow queries: 0% (37/1M) [OK] Highest usage of available connections: 6% (6/100) [OK] Key buffer size / total MyISAM indexes: 32.0M/282.0K [OK] Key buffer hit rate: 99.7% (358K cached / 1K reads) [OK] Query cache efficiency: 83.4% (1M cached / 1M selects) [!!] Query cache prunes per day: 48301 [OK] Sorts requiring temporary tables: 0% (0 temp sorts / 144K sorts) [OK] Temporary tables created on disk: 13% (27K on disk / 203K total) [OK] Thread cache hit rate: 99% (6 created / 33K connections) [!!] Table cache hit rate: 0% (32 open / 51K opened) [OK] Open file limit used: 1% (20/1K) [OK] Table locks acquired immediately: 99% (1M immediate / 1M locks) [!!] InnoDB data size / buffer pool: 29.2M/8.0M -------- Recommendations ----------------------------------------------------- General recommendations: Run OPTIMIZE TABLE to defragment tables for better performance Reduce your overall MySQL memory footprint for system stability Enable the slow query log to troubleshoot bad queries Increase table_cache gradually to avoid file descriptor limits Variables to adjust: *** MySQL's maximum memory usage is dangerously high *** *** Add RAM before increasing MySQL buffer variables *** query_cache_size (> 64M) table_cache (> 32) innodb_buffer_pool_size (>= 29M) and this is the config. # # The MySQL database server configuration file. # # You can copy this to one of: # - "/etc/mysql/my.cnf" to set global options, # - "~/.my.cnf" to set user-specific options. # # One can use all long options that the program supports. # Run program with --help to get a list of available options and with # --print-defaults to see which it would actually understand and use. # # For explanations see # http://dev.mysql.com/doc/mysql/en/server-system-variables.html # This will be passed to all mysql clients # It has been reported that passwords should be enclosed with ticks/quotes # escpecially if they contain "#" chars... # Remember to edit /etc/mysql/debian.cnf when changing the socket location. [client] port = 3306 socket = /var/run/mysqld/mysqld.sock # Here is entries for some specific programs # The following values assume you have at least 32M ram # This was formally known as [safe_mysqld]. Both versions are currently parsed. [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] # # * Basic Settings # # # * IMPORTANT # If you make changes to these settings and your system uses apparmor, you may # also need to also adjust /etc/apparmor.d/usr.sbin.mysqld. # user = mysql socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp skip-external-locking # # Instead of skip-networking the default is now to listen only on # localhost which is more compatible and is not less secure. bind-address = 127.0.0.1 # # * Fine Tuning # key_buffer = 32M max_allowed_packet = 16M thread_stack = 192K thread_cache_size = 8 sort_buffer_size = 4M read_buffer_size = 4M myisam_sort_buffer_size = 16M # This replaces the startup script and checks MyISAM tables if needed # the first time they are touched myisam-recover = BACKUP max_connections = 100 table_cache = 32 tmp_table_size = 128M #thread_concurrency = 10 # # * Query Cache Configuration # #query_cache_limit = 1M query_cache_type = 1 query_cache_size = 64M # # * Logging and Replication # # Both location gets rotated by the cronjob. # Be aware that this log type is a performance killer. # As of 5.1 you can enable the log at runtime! #general_log_file = /var/log/mysql/mysql.log #general_log = 1 log_error = /var/log/mysql/error.log # Here you can see queries with especially long duration #log_slow_queries = /var/log/mysql/mysql-slow.log #long_query_time = 2 #log-queries-not-using-indexes # # The following can be used as easy to replay backup logs or for replication. # note: if you are setting up a replication slave, see README.Debian about # other settings you may need to change. #server-id = 1 #log_bin = /var/log/mysql/mysql-bin.log expire_logs_days = 10 max_binlog_size = 100M #binlog_do_db = include_database_name #binlog_ignore_db = include_database_name # # * InnoDB # # InnoDB is enabled by default with a 10MB datafile in /var/lib/mysql/. # Read the manual for more InnoDB related options. There are many! # # * Security Features # # Read the manual, too, if you want chroot! # chroot = /var/lib/mysql/ # # For generating SSL certificates I recommend the OpenSSL GUI "tinyca". # # ssl-ca=/etc/mysql/cacert.pem # ssl-cert=/etc/mysql/server-cert.pem # ssl-key=/etc/mysql/server-key.pem [mysqldump] quick quote-names max_allowed_packet = 16M [mysql] #no-auto-rehash # faster start of mysql but no tab completition [isamchk] key_buffer = 16M # # * IMPORTANT: Additional settings that can override those from this file! # The files must end with '.cnf', otherwise they'll be ignored. # !includedir /etc/mysql/conf.d/ The site contains 1 wordpress site,so lots of MYISAM but mostly static content as its not changing all that often (A wordpress cache plugin deals with this). And the Magento Site which consists of a lot of InnoDB tables, some MyISAM and some INMEMORY. The "read" side seems to be running pretty well with a mass of optimizations I've used on Magento, the NGINX setup and PHP-FPM + XCACHE. I'd love to have a kick in the right direction with the MySQL config so I'm not blindly altering it based on the MySQLTuner without understanding what I'm changing. Thanks

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• Lots of mysql Sleep processes

  - by user259284

  Hello, I am still having trouble with my mysql server. It seems that since i optimize it, the tables were growing and now sometimes is very slow again. I have no idea of how to optimize more. mySQL server has 48GB of RAM and mysqld is using about 8, most of the tables are innoDB. Site has about 2000 users online. I also run explain on every query and every one of them is indexed. mySQL processes: http://www.pik.ba/mysqlStanje.php my.cnf: # The MySQL database server configuration file. # # You can copy this to one of: # - "/etc/mysql/my.cnf" to set global options, # - "~/.my.cnf" to set user-specific options. # # One can use all long options that the program supports. # Run program with --help to get a list of available options and with # --print-defaults to see which it would actually understand and use. # # For explanations see # http://dev.mysql.com/doc/mysql/en/server-system-variables.html # This will be passed to all mysql clients # It has been reported that passwords should be enclosed with ticks/quotes # escpecially if they contain "#" chars... # Remember to edit /etc/mysql/debian.cnf when changing the socket location. [client] port = 3306 socket = /var/run/mysqld/mysqld.sock # Here is entries for some specific programs # The following values assume you have at least 32M ram # This was formally known as [safe_mysqld]. Both versions are currently parsed. [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] # # * Basic Settings # user = mysql pid-file = /var/run/mysqld/mysqld.pid socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp language = /usr/share/mysql/english skip-external-locking # # Instead of skip-networking the default is now to listen only on # localhost which is more compatible and is not less secure. bind-address = 10.100.27.30 # # * Fine Tuning # key_buffer = 64M key_buffer_size = 512M max_allowed_packet = 16M thread_stack = 128K thread_cache_size = 8 # This replaces the startup script and checks MyISAM tables if needed # the first time they are touched myisam-recover = BACKUP max_connections = 1000 table_cache = 1000 join_buffer_size = 2M tmp_table_size = 2G max_heap_table_size = 2G innodb_buffer_pool_size = 3G innodb_additional_mem_pool_size = 128M innodb_log_file_size = 100M log-slow-queries = /var/log/mysql/slow.log sort_buffer_size = 5M net_buffer_length = 5M read_buffer_size = 2M read_rnd_buffer_size = 12M thread_concurrency = 10 ft_min_word_len = 3 #thread_concurrency = 10 # # * Query Cache Configuration # query_cache_limit = 1M query_cache_size = 512M # # * Logging and Replication # # Both location gets rotated by the cronjob. # Be aware that this log type is a performance killer. #log = /var/log/mysql/mysql.log # # Error logging goes to syslog. This is a Debian improvement :) # # Here you can see queries with especially long duration #log_slow_queries = /var/log/mysql/mysql-slow.log #long_query_time = 2 #log-queries-not-using-indexes # # The following can be used as easy to replay backup logs or for replication. # note: if you are setting up a replication slave, see README.Debian about # other settings you may need to change. #server-id = 1 #log_bin = /var/log/mysql/mysql-bin.log expire_logs_days = 10 max_binlog_size = 100M #binlog_do_db = include_database_name #binlog_ignore_db = include_database_name # # * BerkeleyDB # # Using BerkeleyDB is now discouraged as its support will cease in 5.1.12. skip-bdb # # * InnoDB # # InnoDB is enabled by default with a 10MB datafile in /var/lib/mysql/. # Read the manual for more InnoDB related options. There are many! # You might want to disable InnoDB to shrink the mysqld process by circa 100MB. #skip-innodb # # * Security Features # # Read the manual, too, if you want chroot! # chroot = /var/lib/mysql/ # # For generating SSL certificates I recommend the OpenSSL GUI "tinyca". # # ssl-ca=/etc/mysql/cacert.pem # ssl-cert=/etc/mysql/server-cert.pem # ssl-key=/etc/mysql/server-key.pem [mysqldump] quick quote-names max_allowed_packet = 16M [mysql] #no-auto-rehash # faster start of mysql but no tab completition [isamchk] key_buffer = 16M # # * NDB Cluster # # See /usr/share/doc/mysql-server-*/README.Debian for more information. # # The following configuration is read by the NDB Data Nodes (ndbd processes) # not from the NDB Management Nodes (ndb_mgmd processes). # # [MYSQL_CLUSTER] # ndb-connectstring=127.0.0.1 # # * IMPORTANT: Additional settings that can override those from this file! # The files must end with '.cnf', otherwise they'll be ignored. # !includedir /etc/mysql/conf.d/

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• Why do I get a segmentation fault while redirecting sys.stdout to Tkinter.Text widget in Python?

  - by Brent Nash

  I'm in the process of building a GUI-based application with Python/Tkinter that builds on top of the existing Python bdb module. In this application, I want to silence all stdout/stderr from the console and redirect it to my GUI. To accomplish this purpose, I've written a specialized Tkinter.Text object (code at the end of the post). The basic idea is that when something is written to sys.stdout, it shows up as a line in the "Text" with the color black. If something is written to sys.stderr, it shows up as a line in the "Text" with the color red. As soon as something is written, the Text always scrolls down to view the most recent line. I'm using Python 2.6.1 at the moment. On Mac OS X 10.5, this seems to work great. I have had zero problems with it. On RedHat Enterprise Linux 5, however, I pretty reliably get a segmentation fault during the run of a script. The segmentation fault doesn't always occur in the same place, but it pretty much always occurs. If I comment out the sys.stdout= and sys.stderr= lines from my code, the segmentation faults seem to go away. I'm sure there are other ways around this that I will probably have to resort to, but can anyone see anything I'm doing blatantly wrong here that could be causing these segmentation faults? It's driving me nuts. Thanks! PS - I realize redirecting sys.stderr to the GUI might not be a great idea, but I still get segmentation faults even when I only redirect sys.stdout and not sys.stderr. I also realize that I'm allowing the Text to grow indefinitely at the moment. class ConsoleText(tk.Text): '''A Tkinter Text widget that provides a scrolling display of console stderr and stdout.''' class IORedirector(object): '''A general class for redirecting I/O to this Text widget.''' def __init__(self,text_area): self.text_area = text_area class StdoutRedirector(IORedirector): '''A class for redirecting stdout to this Text widget.''' def write(self,str): self.text_area.write(str,False) class StderrRedirector(IORedirector): '''A class for redirecting stderr to this Text widget.''' def write(self,str): self.text_area.write(str,True) def __init__(self, master=None, cnf={}, **kw): '''See the __init__ for Tkinter.Text for most of this stuff.''' tk.Text.__init__(self, master, cnf, **kw) self.started = False self.write_lock = threading.Lock() self.tag_configure('STDOUT',background='white',foreground='black') self.tag_configure('STDERR',background='white',foreground='red') self.config(state=tk.DISABLED) def start(self): if self.started: return self.started = True self.original_stdout = sys.stdout self.original_stderr = sys.stderr stdout_redirector = ConsoleText.StdoutRedirector(self) stderr_redirector = ConsoleText.StderrRedirector(self) sys.stdout = stdout_redirector sys.stderr = stderr_redirector def stop(self): if not self.started: return self.started = False sys.stdout = self.original_stdout sys.stderr = self.original_stderr def write(self,val,is_stderr=False): #Fun Fact: The way Tkinter Text objects work is that if they're disabled, #you can't write into them AT ALL (via the GUI or programatically). Since we want them #disabled for the user, we have to set them to NORMAL (a.k.a. ENABLED), write to them, #then set their state back to DISABLED. self.write_lock.acquire() self.config(state=tk.NORMAL) self.insert('end',val,'STDERR' if is_stderr else 'STDOUT') self.see('end') self.config(state=tk.DISABLED) self.write_lock.release()

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• Django + dbxml + Apache = problems. Any solutions?

  - by Jason

  I'm trying to set up a Django application using WSGI. That works fine. However, I am having some issues with part of my Django app that uses BDB XML. My Apache config is as follows: Listen 8000 WSGISocketPrefix /tmp/wsgi <VirtualHost *:8000> ServerName <server name> DocumentRoot <path to doc root> LogLevel info WSGIScriptAlias / <path to wsgi> WSGIApplicationGroup %{GLOBAL} WSGIDaemonProcess debug threads=1 WSGIProcessGroup debug </VirtualHost> However, I'm still getting the following error: DB_ENV->repmgr_stat interface requires an environment configured for the replication subsystem [error] child died with signal 11 My environment is opened as: environment = DBEnv() environment.open( <absolute db env path>, DB_CREATE|DB_INIT_LOCK|DB_INIT_LOG|DB_INIT_MPOOL, 0 ) I am using: python 2.6.2 apache 2.2 ubuntu 9.04 dbxml 2.5.13 compiled from source (so libdb-4.8, bsddb3, all that jazz) I see Apache seems to link to libdb-4.6. Is this a problem? ldd /usr/sbin/apache2 | grep libdb libdb-4.6.so => /usr/lib/libdb-4.6.so (0xb7c01000) Updated Program received signal SIGSEGV, Segmentation fault. [Switching to Thread 0xb5a48b90 (LWP 12700)] 0x00000000 in ?? () (gdb) thread apply all bt Thread 4 (Thread 0xb6a67b90 (LWP 12698)): #0 0xb7f11422 in __kernel_vsyscall () #1 0xb7de07b1 in select () from /lib/tls/i686/cmov/libc.so.6 #2 0xb7ea5bcf in apr_sleep () from /usr/lib/libapr-1.so.0 #3 0xb6d7afee in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #4 0xb7ea38ec in ?? () from /usr/lib/libapr-1.so.0 #5 0xb7e6d4ff in start_thread () from /lib/tls/i686/cmov/libpthread.so.0 #6 0xb7de849e in clone () from /lib/tls/i686/cmov/libc.so.6 Thread 3 (Thread 0xb6249b90 (LWP 12699)): #0 0xb7f11422 in __kernel_vsyscall () #1 0xb7de07b1 in select () from /lib/tls/i686/cmov/libc.so.6 #2 0xb7ea5bcf in apr_sleep () from /usr/lib/libapr-1.so.0 #3 0xb6d7ab39 in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #4 0xb7ea38ec in ?? () from /usr/lib/libapr-1.so.0 #5 0xb7e6d4ff in start_thread () from /lib/tls/i686/cmov/libpthread.so.0 #6 0xb7de849e in clone () from /lib/tls/i686/cmov/libc.so.6 Thread 2 (Thread 0xb5a48b90 (LWP 12700)): #0 0x00000000 in ?? () #1 0xb4f03b5e in DbXml::XmlManager::XmlManager () from /home/jason/dbxml-2.5.13/install/lib/libdbxml-2.5.so #2 0xb501b29b in _wrap_new_XmlManager (self=0x0, args=0xac66fcc) at dbxml_python_wrap.cpp:5183 #3 0xb6b77aed in PyCFunction_Call () from /usr/lib/libpython2.6.so.1.0 #4 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #5 0xb6bd70b5 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0 #6 0xb6bdb910 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0 #7 0xb6b6187a in ?? () from /usr/lib/libpython2.6.so.1.0 #8 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #9 0xb6b427a8 in ?? () from /usr/lib/libpython2.6.so.1.0 #10 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #11 0xb6b9ae03 in ?? () from /usr/lib/libpython2.6.so.1.0 #12 0xb6b90f55 in ?? () from /usr/lib/libpython2.6.so.1.0 #13 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #14 0xb6bd7618 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0 #15 0xb6bdb910 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0 #16 0xb6b6187a in ?? () from /usr/lib/libpython2.6.so.1.0 #17 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #18 0xb6b427a8 in ?? () from /usr/lib/libpython2.6.so.1.0 #19 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #20 0xb6bd3a34 in PyEval_CallObjectWithKeywords () from /usr/lib/libpython2.6.so.1.0 #21 0xb6b44a7d in PyInstance_New () from /usr/lib/libpython2.6.so.1.0 #22 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #23 0xb6bd7618 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0 #24 0xb6bdb910 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0 #25 0xb6b61969 in ?? () from /usr/lib/libpython2.6.so.1.0 #26 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #27 0xb6bd70b5 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0 #28 0xb6bdb910 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0 #29 0xb6b61969 in ?? () from /usr/lib/libpython2.6.so.1.0 #30 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #31 0xb6b427a8 in ?? () from /usr/lib/libpython2.6.so.1.0 #32 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #33 0xb6b9b483 in ?? () from /usr/lib/libpython2.6.so.1.0 #34 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #35 0xb6bd70b5 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0 #36 0xb6bdab4f in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0 #37 0xb6bdb910 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0 #38 0xb6b6187a in ?? () from /usr/lib/libpython2.6.so.1.0 #39 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #40 0xb6b427a8 in ?? () from /usr/lib/libpython2.6.so.1.0 #41 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #42 0xb6b9b483 in ?? () from /usr/lib/libpython2.6.so.1.0 #43 0xb6b3198c in PyObject_Call () from /usr/lib/libpython2.6.so.1.0 #44 0xb6bd3a34 in PyEval_CallObjectWithKeywords () from /usr/lib/libpython2.6.so.1.0 #45 0xb6d7172d in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #46 0xb6d7539f in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #47 0xb6d7e1d8 in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #48 0xb6d7a42c in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #49 0xb6d7a8bd in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #50 0xb6d7a9c5 in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #51 0xb7ea38ec in ?? () from /usr/lib/libapr-1.so.0 #52 0xb7e6d4ff in start_thread () from /lib/tls/i686/cmov/libpthread.so.0 #53 0xb7de849e in clone () from /lib/tls/i686/cmov/libc.so.6 Thread 1 (Thread 0xb7460b00 (LWP 12697)): #0 0xb7f11422 in __kernel_vsyscall () #1 0xb7e75300 in sigwait () from /lib/tls/i686/cmov/libpthread.so.0 #2 0xb7ea3f3b in apr_signal_thread () from /usr/lib/libapr-1.so.0 #3 0xb6d7b48d in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #4 0xb6d7bc98 in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #5 0xb6d79632 in ?? () from /usr/lib/apache2/modules/mod_wsgi.so #6 0xb7e9a2c9 in apr_proc_other_child_alert () from /usr/lib/libapr-1.so.0 #7 0x08092202 in ap_mpm_run () #8 0x080673c8 in main () #0 0x00000000 in ?? ()

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• Very Unusual Margin Appears Always in Internet Explorer [CSS]

  - by Jay

  Only in Internet Explorer does this occur: I'm getting an additional margin (of 19 pixels) below a fieldset and I can't seem to see why, whatever I try! Try it for yourself, take a look at http://theshrop.com/d/call_us_or_call_in.php. To aid I've added a grid and some background colours. The fieldset should have a 1.125em bottom margin and it does in Safari, Firefox etc. It has an extra 19 pixels in Internet Explorer? I've given the fieldset a width and height so it hasLayout, hope this helps. body{ color:#171717; font:1em/1.125em Georgia,serif; margin:0; padding:0; } /* */ fieldset{ background:fuchsia; border:0 solid green; border-width:0.0625em 0; height:19.125em; margin:0 0 1.125em; padding:3.3125em 1.125em 1.0625em; position:relative; width:31.5em; } /* */ form dl{ margin:0; } form dl dd{ /* */ height:2.25em; margin:0 0 1.125em; position:relative; /* */ } form dl dt{ margin:0 0 1.125em; } /* */ form dl dt+dd+dt+dd{ height:7.875em; } /* */ form dl+div{ line-height:2.25em; /* */ margin:0; padding:0; /* */ } h3{ color:#701; font:bold 1em/1.125em Helvetica,Arial,serif; margin:0 0 1.125em; text-transform:uppercase; } input[type=text]{ border:0.0625em solid #171717; font:1em/1.125em Georgia,serif; height:1.125em; margin:0; padding:0.5em 1.0625em; /* */ position:absolute; top:0; /* */ } /* */ legend{ background:aqua; margin:1.0625em 0 1.125em; padding:0; position:absolute; top:0; } /* */ p{ background:lime; margin:0 0 1.125em; } textarea{ border:0.0625em solid #171717; font:1em/1.125em Georgia,serif; height:6.75em; margin:0; padding:0.5em 1.0625em; /* */ position:absolute; top:0; /* */ } .Address{ margin:0 0 1.125em; } .Address dd{ margin:0; } .Address dt{ display:none; } .Address dt+dd+dt+dd{ display:inline; } .Address dt+dd+dt+dd+dt+dd+dt+dd{ display:block; text-transform:uppercase; } .Bad{ background:#dbb; color:#901; } .Calendar{ list-style:none; margin:0; padding:0; } .Calendar dd{ background:#701; font:bold 0.5625em/2em Helvetica,Arial,serif; margin:0; text-align:center; text-transform:uppercase; } .Calendar dl{ border:0 solid #111; border-width:0.0625em 0.125em 0.125em 0.0625em; float:left; margin:-0.0625em 1em 1em 1.0625em; width:3.375em; } .Calendar dt{ display:none; } .Calendar dt+dd+dt+dd{ background:#fff; color:#171717; font:1em/2.25em Georgia,serif; margin:0; } .Calendar h4{ float:right; font:1em/1.125em Georgia,serif; margin:0 0 1.125em; width:10.125em; } .Calendar li{ clear:both; } .Calendar p{ float:right; font:1em/1.125em Georgia,serif; width:10.125em; } .Good{ background:#bdb; color:#091; } .Left{ float:left; margin:0 0.5625em 0 1.125em; } .Message{ border-style:solid; border-width:0.0625em; margin:0 0 1.125em; padding:1em 1.0625em 0; } .Message p{ margin:0 0 1.0625em; padding:0.0625em 0 0; } .Narrow{ width:15.75em; } .Narrow input[type=text]{ width:13.5em; } .Right{ float:right; margin:0 1.125em 0 0.5625em; } .Wide{ /* */ background:gray; /* */ width:31.5em; } .Wide input[type=text]{ width:29.25em; } .Wide textarea{ width:29.25em; } .Wrapper{ background:url(../i/grid_w18_h18.png); margin:0 auto; overflow:hidden; padding:1.125em 0 0; position:relative; width:50.625em; } #Blackboard{ background:#171717; color:#fff; margin:1.125em 0 0; min-width:50.625em; } #Blackboard a{ background:#111; color:#fff; } #Blackboard h3{ color:#fff; } #Blackboard div>p{ font:1.5em/1.5em Georgia,serif; } #Footer{ background:#901; clear:both; color:#fff; min-width:50.625em; } #Footer h3{ color:#fff; } #Google_Copilot ol{ padding:0; } #Google_Copilot ol li{ list-style:none; margin:0 0 1.125em; padding:0; /* I.E.7 Fix */ } #Google_Map{ height:23.625em; margin:0 0 1.125em; width:31.5em; } #Google_Query dt{ /* display:none; */ } #Header{ background:#901; min-width:50.625em; } #Header h1{ background:url(../i/the_shropshire_arms_w288_h72.gif) no-repeat 0 2.8125em; font:1em/1.125em serif; height:7.875em; margin:0 0 0 0.5625em; width:18em; } #Header h1 a{ display:none; } #Header h2{ background-color:#933; display:inline; font:1em/2.25em Georgia,serif; left:0; margin:1.125em 0 0 0.5625em; padding:0 0.5625em; position:absolute; top:0; } #Header h2 a{ color:#fff; text-decoration:none; } #Header h2 a span{ text-decoration:underline; } #Header ul{ list-style:none; height:2.25em; margin:0; padding:0; } #Header ul li{ display:inline; /* I.E.7 Fix */ } #Header ul li a{ background:#fff; color:#000; float:left; line-height:2.25em; margin:0 0 0 0.5625em; padding:0 0.5625em; text-decoration:none; } #Header .Wrapper{ background:url(../i/shield_w126_h126.gif) no-repeat 42.1875em 1.6875em; } This post could get stupidly long so I'll provide a link to the Web page rather than post the HTML: http://theshrop.com/d/call_us_or_call_in.php I really appreciate answers and all who contribute, thanks in advance!

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