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• I have an Errno 13 Permission denied with subprocess in python

  - by wDroter

  The line with the issue is ret=subprocess.call(shlex.split(cmd)) cmd = /usr/share/java -cp pig-hadoop-conf-Simpsons:lib/pig-0.8.1-cdh3u1-core.jar:lib/hadoop-core-0.20.2-cdh3u1.jar org.apache.pig.Main -param func=cat -param from =foo.txt -x mapreduce fsFunc.pig The error is. File "./run_pig.py", line 157, in process ret=subprocess.call(shlex.split(cmd)) File "/usr/lib/python2.7/subprocess.py", line 493, in call return Popen(*popenargs, **kwargs).wait() File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ errread, errwrite) File "/usr/lib/python2.7/subprocess.py", line 1249, in _execute_child raise child_exception OSError: [Errno 13] Permission denied Let me know if any more info is needed. Any help is appreciated. Thanks.

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• How can I capture the output and exit value of a subprocess in Perl? [closed]

  - by Ryan Thompson

  Possible Duplicate: How do you capture stderr, stdout, and the exit code all at once, in Perl? I'm writing a Perl script that needs to call a subprocess and capture both the output and the exit value. Is there a way to get both?

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• How to replicate tee behavior in python when using subprocess?

  - by Sorin Sbarnea

  I'm looking for a Python solution that will allow me to save the output of a command in a file without hiding it from the console. Requirements Python solution (not calling tee, it is not available under Windows) to work when calling external programs (subprocess) to work for both stderr and stdout

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• Capture output and exit value of subprocess in perl?

  - by Ryan Thompson

  I'm writing a per script that needs to call a subprocess and capture both the output and the exit value. Is there a way to get both?

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• What's a good equivalent to python's subprocess.check_call that returns the contents of stdout?

  - by Chris R

  I'd like a good method that matches the interface of subprocess.check_call -- ie, it throws CalledProcessError when it fails, is synchronous, &c -- but instead of returning the return code of the command (if it even does that) returns the program's output, either only stdout, or a tuple of (stdout, stderr). Does somebody have a method that does this?

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• Python subprocess.Popen hangs in 'for l in p.stdout' until p terminates, why?

  - by Albert

  I have that code: #!/usr/bin/python -u localport = 9876 import sys, re, os from subprocess import * tun = Popen(["./newtunnel", "22", str(localport)], stdout=PIPE, stderr=STDOUT) print "** Started tunnel, waiting to be ready ..." for l in tun.stdout: sys.stdout.write(l) if re.search("Waiting for connection", l): print "** Ready for SSH !" break The "./newtunnel" will not exit, it will constantly output more and more data to stdout. However, that code will not give any output and just keeps waiting in the tun.stdout. When I kill the newtunnel process externally, it flushes all the data to tun.stdout. So it seems that I can't get any data from the tun.stdout while it is still running. Why is that? How can I get the information? Note that the default bufsize for Popen is 0 (unbuffered). I can also specify bufsize=0 but that doesn't change anything.

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• Python - Execute Process -> Block till it exits & Supress Output

  - by Jason

  Hi, I'm using the following to execute a process and hide its output from Python. It's in a loop though, and I need a way to block until the sub process has terminated before moving to the next iteration. subprocess.Popen(["scanx", "--udp", host], stdin=subprocess.PIPE, stdout=subprocess.PIPE, stderr=subprocess.PIPE) Thanks for any help.

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• Can anyone tell me why these lines are not working?

  - by user343934

  I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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• Python - Subprocess Popen and Thread error

  - by n0idea

  In both functions record and ftp, i have subprocess.Popen if __name__ == '__main__': try: t1 = threading.Thread(target = record) t1.daemon = True t1.start() t2 = threading.Thread(target = ftp) t2.daemon = True t2.start() except (KeyboardInterrupt, SystemExit): sys.exit() The error I'm receiving is: Exception in thread Thread-1 (most likely raised during interpreter shutdown): Traceback (most recent call last): File "/usr/lib/python2.7/threading.py", line 551, in __bootstrap_inner File "/usr/lib/python2.7/threading.py", line 504, in run File "./in.py", line 20, in recordaudio File "/usr/lib/python2.7/subprocess.py", line 493, in call File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ File "/usr/lib/python2.7/subprocess.py", line 1237, in _execute_child <type 'exceptions.AttributeError'>: 'NoneType' object has no attribute 'close' What might the issue be ?

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• Killing a subprocess including its children from python

  - by user316664

  Hi, I'm using the subprocess module on python 2.5 to spawn a java program (the selenium server, to be precise) as follows: import os import subprocess display = 0 log_file_path = "/tmp/selenium_log.txt" selenium_port = 4455 selenium_folder_path = "/wherever/selenium/lies" env = os.environ env["DISPLAY"] = ":%d.0" % display command = ["java", "-server", "-jar", 'selenium-server.jar', "-port %d" % selenium_port] log = open(log_file_path, 'a') comm = ' '.join(command) selenium_server_process = subprocess.Popen(comm, cwd=selenium_folder_path, stdout=log, stderr=log, env=env, shell=True) This process is supposed to get killed once the automated tests are finished. I'm using os.kill to do this: os.killpg(selenium_server_process.pid, signal.SIGTERM) selenium_server_process.wait() This does not work. The reason is that the shell subprocess spawns another processfor the java program, and the pid of that process is unknown to my python code. I've tried killing the process group with os.killpg, but that kills also the python process which runs this code in the first place. Setting shell to false, thus avoiding the java program to run inside a shell environment, is also out of the question, due to other reasons. Does anyone have an idea how I can kill the shell and any other processes generated by it? Cheers, Ulas

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• Non-blocking read on a stream in python.

  - by Mathieu Pagé

  Hi, I'm using the subprocess module to start a subprocess and connect to it's output stream (stdout). I want to be able to execute non-blocking reads on its stdout. Is there a way to make .readline non-bloking or to check if there is data on the stream before I invoke .readline? I'd like this to be portable or at least work under Windows and Linux. here is how I do it for now (It's blocking on the .readline if no data is avaible): p = subprocess.Popen('myprogram.exe', stdout = subprocess.PIPE) str = p.stdout.readline() Thanks for your help.

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• Python encoding for pipe.communicate

  - by Brian M. Hunt

  I'm calling pipe.communicate from Python's subprocess module from Python 2.6. I get the following error from this code: from subprocess import Popen pipe = Popen(cwd) pipe.communicate( data ) For an arbitrary cwd, and where data that contains unicode (specifically 0xE9): Exec. exception: 'ascii' codec can't encode character u'\xe9' in position 507: ordinal not in range(128) Traceback (most recent call last): ... stdout, stderr = pipe.communicate( data ) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/subprocess.py", line 671, in communicate return self._communicate(input) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/subprocess.py", line 1177, in _communicate bytes_written = os.write(self.stdin.fileno(), chunk) This is happening, I presume, because pipe.communicate() is expecting ASCII encoded string, but data is unicode. Is this the problem I'm encountering, and i sthere a way to pass unicode to pipe.communicate()? Thank you for reading! Brian

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• How do I redirect stdin/stdout when I have a sequence of commands in Bash?

  - by Tom

  I've currently got a Bash command being executed (via Python's subprocess::Popen) which is reading from stdin, doing something and outputing to stdout. Something along the lines of: pid = subprocess.Popen( ["-c", "cmd1 | cmd2"], stdin = subprocess.PIPE, stdout = subprocess.PIPE, shell =True ) output_data = pid.communicate( "input data\n" ) Now, what I want to do is to change that to execute another command in that same subshell that will alter the state before the next commands execute, so my shell command line will now (conceptually) be: cmd0; cmd1 | cmd2 Is there any way to have the input sent to cmd1 instead of cmd0 in this scenario? I'm assuming the output will include cmd0's output (which will be empty) followed by cmd2's output. cmd0 shouldn't actually read anything from stdin, does that make a difference in this situation? I know this is probably just a dumb way of doing this, I'm trying to patch in cmd0 without altering the other code too significantly. That said, I'm open to suggestions if there's a much cleaner way to approach this.

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• Python IPC, popen too slow

  - by UnableToLoad

  i need to run a subprocess (./myProgram) form python script and get output, actually i do this: import subprocess proc = subprocess.Popen('./generate_out', shell=False, stdout=subprocess.PIPE, ) while proc.poll() is None: out = proc.stdout.readline() data = doStuff(out) print(data) but is slow, sometimes pass a lot of time between the output produced by ./generate_out and the print(data), knowing that my doStuff() function is very fast, i think there is some buffer slowing down my pipe... Notes: ./generate_out, generates potentially an unlimited number of lines of finite length each. It seems that when too few chars are put in the pipe between the two processes nothing happens, then when enough is produced i get a huge print (non the expected behaviour!) sometimes i wait many seconds (10-20 and more) between generate_out print and python print) what can i do? maybe communicate() is faster? anithing else? Thank you a lot!

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• Python: read streaming input from subprocess.communicate()

  - by Heinrich Schmetterling

  I'm using Python's subprocess.communicate() to read stdout from a process that runs for about a minute. How can I print out each line of that process's stdout in a streaming fashion, so that I can see the output as it's generated, but still block on the process terminating before continuing? subprocess.communicate() appears to give all the output at once.

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• How to resolve "dpkg: error processing /var/cache/apt/archives/python-apport_2.0.1-0ubuntu9_all.deb"?

  - by raz7588

  Update Manager will not update although I have over 100 updates to do I get a error message like this: installArchives() failed: Extracting templates from packages: 29%% Extracting templates from packages: 58%% Extracting templates from packages: 88%% Extracting templates from packages: 100%% Preconfiguring packages ... Extracting templates from packages: 29%% Extracting templates from packages: 58%% Extracting templates from packages: 88%% Extracting templates from packages: 100%% Preconfiguring packages ... Extracting templates from packages: 29%% Extracting templates from packages: 58%% Extracting templates from packages: 88%% Extracting templates from packages: 100%% Preconfiguring packages ... Extracting templates from packages: 29%% Extracting templates from packages: 58%% Extracting templates from packages: 88%% Extracting templates from packages: 100%% Preconfiguring packages ... (Reading database ... (Reading database ... 5%% (Reading database ... 10%% (Reading database ... 15%% (Reading database ... 20%% (Reading database ... 25%% (Reading database ... 30%% (Reading database ... 35%% (Reading database ... 40%% (Reading database ... 45%% (Reading database ... 50%% (Reading database ... 55%% (Reading database ... 60%% (Reading database ... 65%% (Reading database ... 70%% (Reading database ... 75%% (Reading database ... 80%% (Reading database ... 85%% (Reading database ... 90%% (Reading database ... 95%% (Reading database ... 100%% (Reading database ... 189751 files and directories currently installed.) Preparing to replace python-problem-report 2.0.1-0ubuntu7 (using .../python-problem-report_2.0.1-0ubuntu9_all.deb) ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/python-problem-report_2.0.1-0ubuntu9_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace python-apport 2.0.1-0ubuntu7 (using .../python-apport_2.0.1-0ubuntu9_all.deb) ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/python-apport_2.0.1-0ubuntu9_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace apport 2.0.1-0ubuntu7 (using .../apport_2.0.1-0ubuntu9_all.deb) ... apport stop/waiting Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/apport_2.0.1-0ubuntu9_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already apport start/running Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace gnome-orca 3.4.1-0ubuntu0.1 (using .../gnome-orca_3.4.2-0ubuntu0.1_all.deb) ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/gnome-orca_3.4.2-0ubuntu0.1_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace python-piston-mini-client 0.7.2-0ubuntu1 (using .../python-piston-mini-client_0.7.2+bzr57-0ubuntu1_all.deb) ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/python-piston-mini-client_0.7.2+bzr57-0ubuntu1_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace oneconf 0.2.8 (using .../oneconf_0.2.8.1_all.deb) ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/oneconf_0.2.8.1_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace software-center 5.2.2 (using .../software-center_5.2.2.2_all.deb) ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: warning: subprocess old pre-removal script returned error exit status 1 dpkg - trying script from the new package instead ... Traceback (most recent call last): File "/usr/bin/pyclean", line 33, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error processing /var/cache/apt/archives/software-center_5.2.2.2_all.deb (--unpack): subprocess new pre-removal script returned error exit status 1 No apport report written because MaxReports is reached already Traceback (most recent call last): File "/usr/bin/pycompile", line 39, in <module> from debpython.namespace import add_namespace_files ValueError: bad marshal data (unknown type code) dpkg: error while cleaning up: subprocess installed post-installation script returned error exit status 1 Preparing to replace libglade2-0 1:2.6.4-1ubuntu1 (using .../libglade2-0_1%%3a2.6.4-1ubuntu1.1_amd64.deb) ... Unpacking replacement libglade2-0 ... Preparing to replace libv4l-0 0.8.6-1ubuntu1 (using .../libv4l-0_0.8.6-1ubuntu2_amd64.deb) ... De-configuring libv4l-0:i386 ... Unpacking replacement libv4l-0 ... Preparing to replace libv4l-0:i386 0.8.6-1ubuntu1 (using .../libv4l-0_0.8.6-1ubuntu2_i386.deb) ... Unpacking replacement libv4l-0:i386 ... Preparing to replace libv4lconvert0:i386 0.8.6-1ubuntu1 (using .../libv4lconvert0_0.8.6-1ubuntu2_i386.deb) ... De-configuring libv4lconvert0 ... Unpacking replacement libv4lconvert0:i386 ... Preparing to replace libv4lconvert0 0.8.6-1ubuntu1 (using .../libv4lconvert0_0.8.6-1ubuntu2_amd64.deb) ... Unpacking replacement libv4lconvert0 ... Errors were encountered while processing: /var/cache/apt/archives/python-problem-report_2.0.1-0ubuntu9_all.deb /var/cache/apt/archives/python-apport_2.0.1-0ubuntu9_all.deb /var/cache/apt/archives/apport_2.0.1-0ubuntu9_all.deb /var/cache/apt/archives/gnome-orca_3.4.2-0ubuntu0.1_all.deb /var/cache/apt/archives/python-piston-mini-client_0.7.2+bzr57-0ubuntu1_all.deb /var/cache/apt/archives/oneconf_0.2.8.1_all.deb /var/cache/apt/archives/software-center_5.2.2.2_all.deb Error in function: SystemError: E:Sub-process /usr/bin/dpkg returned an error code (1) Setting up libglade2-0 (1:2.6.4-1ubuntu1.1) ... dpkg: error processing gnome-orca (--configure): Package is in a very bad inconsistent state - you should reinstall it before attempting configuration. dpkg: error processing python-problem-report (--configure): Package is in a very bad inconsistent state - you should reinstall it before attempting configuration. Setting up libv4lconvert0 (0.8.6-1ubuntu2) ... Setting up libv4lconvert0:i386 (0.8.6-1ubuntu2) ... dpkg: error processing python-piston-mini-client (--configure): Package is in a very bad inconsistent state - you should reinstall it before attempting configuration. Setting up libv4l-0 (0.8.6-1ubuntu2) ... Setting up libv4l-0:i386 (0.8.6-1ubuntu2) ... dpkg: dependency problems prevent configuration of python-apport: python-apport depends on python-problem-report (>= 0.94); however: Package python-problem-report is not configured yet. dpkg: error processing python-apport (--configure): dependency problems - leaving unconfigured dpkg: dependency problems prevent configuration of software-center: software-center depends on python-piston-mini-client (>= 0.1+bzr29); however: Package python-piston-mini-client is not configured yet. dpkg: error processing software-center (--configure): dependency problems - leaving unconfigured dpkg: dependency problems prevent configuration of oneconf: oneconf depends on python-piston-mini-client (>= 0.3+bzr32-0ubuntu1); however: Package python-piston-mini-client is not configured yet. dpkg: error processing oneconf (--configure): dependency problems - leaving unconfigured dpkg: dependency problems prevent configuration of apport: apport depends on python-apport (>= 2.0.1-0ubuntu7); however: Package python-apport is not configured yet. dpkg: error processing apport (--configure): dependency problems - leaving unconfigured Processing triggers for libc-bin ... ldconfig deferred processing now taking place This has been going on for two weeks now and I cannot get any updates. Any help would be great.

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• django fcgi - call a management command with subprocess.Popen

  - by user41855

  Hi, I'm using an app called django-chronograph. It has a code of line which works in my dev environment and does not work in production: p = subprocess.Popen(['python', get_manage_py(), 'run_job', str(self.pk)]) This line crashes in production with: unknown command run_job Whereas when I run directly from command line: manage.py run_job It works fine. Interestingly it worked once when we exchanged 'python' with 'usr/bin/python'. then we restarted the server once more and it was back to old behaviour. Thus it seems as we have a python path issue. I'm not the guy who is running the server, its my app that should run and it would be great to get some help here. Attention: I'm a total noob regarding server-administration.. server environment: NGINX with FCGI-Daemon FCGI in prefork-mode

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• Python Daemon Subprocess not working at boot

  - by Adam Richardson

  I am attempting to write a python daemon that will launch at boot. The goal of the script is to receive a job from our gearman load balancing server and complete the job. I am using the python-daemon module from pypi (http://pypi.python.org/pypi/python-daemon/). The nature of the job that it is completing is converting images in the orf (olympus raw image format) to jpeg. In order to accomplish this an outside program is used, ufraw in this case. The problem comes in when I start the daemon at boot, if I launch from the shell it runs perfectly and completes the work. When it starts at boot it is unable to launch the subprocess command. commandString = '/usr/bin/ufraw-batch --interpolation=four-color --wb=camera --compression=100 --output="' + outfile + '" --out-type=jpg --overwrite "' + infile + '"' args = shlex.split(commandString) process = subprocess.Popen(args).wait() I am not sure what I am doing wrong. Thanks for any help.

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• Execute a BASH command in Python-- in the same process

  - by Baldur

  I need to execute the command . /home/db2v95/sqllib/db2profile before I can import ibm_db_dbi in Python 2.6. Executing it before I enter Python works: baldurb@gigur:~$ . /home/db2v95/sqllib/db2profile baldurb@gigur:~$ python Python 2.6.4 (r264:75706, Dec 7 2009, 18:45:15) [GCC 4.4.1] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import ibm_db_dbi >>> but executing it in Python using os.system(". /home/db2v95/sqllib/db2profile") or subprocess.Popen([". /home/db2v95/sqllib/db2profile"]) results in an error. What am I doing wrong? Edit: this is the error I receive: > Traceback (most recent call last): > File "<file>.py", line 8, in > <module> > subprocess.Popen([". /home/db2v95/sqllib/db2profile"]) > File > "/usr/lib/python2.6/subprocess.py", > line 621, in __init__ > errread, errwrite) File "/usr/lib/python2.6/subprocess.py", > line 1126, in _execute_child > raise child_exception OSError: [Errno 2] No such file or directory

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• Python: Converting a tuple to a string with 'err'

  - by skylarking

  Given this : import os import subprocess def check_server(): cl = subprocess.Popen(["nmap","10.7.1.71"], stdout=subprocess.PIPE) result = cl.communicate() print result check_server() check_server() returns this tuple: ('\nStarting Nmap 4.53 ( http://insecure.org ) at 2010-04-07 07:26 EDT\nInteresting ports on 10.7.1.71:\nNot shown: 1711 closed ports\nPORT STATE SERVICE\n21/tcp open ftp\n22/tcp open ssh\n80/tcp open http\n\nNmap done: 1 IP address (1 host up) scanned in 0.293 seconds\n', None) Changing the second line in the method to result, err = cl.communicate() results in check_server() returning : Starting Nmap 4.53 ( http://insecure.org ) at 2010-04-07 07:27 EDT Interesting ports on 10.7.1.71: Not shown: 1711 closed ports PORT STATE SERVICE 21/tcp open ftp 22/tcp open ssh 80/tcp open http Nmap done: 1 IP address (1 host up) scanned in 0.319 seconds Looks to be the case that the tuple is converted to a string, and the \n's are being stripped.... but how? What is 'err' and what exactly is it doing?

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• Communicate multiple times with a process without breaking the pipe?

  - by Manux

  Hello, it's not the first time I'm having this problem and its really bugging me. Whenever I open a pipe using the Python subprocess module, I can only communicate with it once, as the documentation specifies: Read data from stdout and stderr, until end-of-file is reached proc = sub.Popen("psql -h darwin -d main_db".split(),stdin=sub.PIPE,stdout=sub.PIPE) print proc.communicate("select a,b,result from experiment_1412;\n")[0] print proc.communicate("select theta,zeta,result from experiment_2099\n")[0] The problem here is that the second time, Python isn't happy. Indeed, he decided to close the file after the first communicate: Traceback (most recent call last): File "a.py", line 30, in <module> print proc.communicate("select theta,zeta,result from experiment_2099\n")[0] File "/usr/lib64/python2.5/subprocess.py", line 667, in communicate return self._communicate(input) File "/usr/lib64/python2.5/subprocess.py", line 1124, in _communicate self.stdin.flush() ValueError: I/O operation on closed file So... multiple communications aren't allowed? I hope not ;) Please enlighten me.

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• Run command with no terminal output

  - by Insomaniacal

  Hello, I've searched around online, but can't find the answer to my question. What I want to do is run a command in pythong, using the subprocess module, and store the output in a variable. However, I do not want the command's output to be printed to the terminal. For this code: def storels(): a = subprocess.Popen("ls",shell=True) storels() I get the directory listing in the terminal, instead of having it stored in a. I've also tried def storels(): subprocess.Popen("ls > tmp",shell=True) a = open("./tmp") [Rest of Code] storels() This also prints the output of ls to my terminal. I've even tried this command with the somewhat dated os.system method, since running "ls tmp" in the terminal doesn't print ls to the terminal at all, but stores it in tmp. However, the same thing happens. I'm using python 2.6. Any suggestions? Thanks in advance!

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• Running shell commands without a shell window

  - by aF

  With either subprocess.call or subprocess.Popen, executing a shell command makes a shell window quicky appear and disappear. How can I run the shell command without the shell window?

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• Python: Script works, but seems to deadlock after some time

  - by sberry2A

  I have the following script, which is working for the most part Link to PasteBin The script's job is to start a number of threads which in turn each start a subprocess with Popen. The output from each subprocess is as follows: 1 2 3 . . . n Done Bascially the subprocess is transferring 10M records from tables in one database to different tables in another db with a lot of data massaging/manipulation in between because of the different schemas. If the subprocess fails at any time in it's execution (bad records, duplicate primary keys, etc), or it completes successfully, it will output "Done\n". If there are no more records to select against for transfer then it will output "NO DATA\n" My intent was to create my script "tableTransfer.py" which would spawn a number of these processes, read their output, and in turn output information such as number of updates completed, time remaining, time elapsed, and number of transfers per second. I started running the process last night and checked in this morning to see it had deadlocked. There were not subprocceses running, there are still records to be updated, and the script had not exited. It was simply sitting there, no longer outputting the current information because no subprocces were running to update the total number complete which is what controls updates to the output. This is running on OS X. I am looking for three things: I would like to get rid of the possibility of this deadlock occurring so I don't need to check in on it as frequently. Is there some issue with locking? Am I doing this in a bad way (gThreading variable to control looping of spawning additional thread... etc.) I would appreciate some suggestions for improving my overall methodology. How should I handle ctrl-c exit? Right now I need to kill the process, but assume I should be able to use the signal module or other to catch the signal and kill the threads, is that right? I am not sure whether I should be pasting my entire script here, since I usually just paste snippets. Let me know if I should paste it here as well.

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• How to get path to the installed GIT in Python?

  - by Vladimir Prudnikov

  I need to get a path to the GIT on Max OS X 10.6 using Python 2.6.1 into script variables. I use this code for that: r = subprocess.Popen(shlex.split("which git"), stdout=subprocess.PIPE) print r.stdout.read() but the problem is that output is empty (I tried stderr too). It works fine with another commands such as pwd or ls. Can anyone help me with that?

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