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  • Cannot launch an application, 'No such file or directory' but it exists

    - by pst007x
    The folder exists, the application has been made executable. But when i run it I get the following message: pst007x@pst007x-Aspire-5741:~$ /home/pst007x/Applications/ClipGrab/clipgrab bash: /home/pst007x/Applications/ClipGrab/clipgrab: No such file or directory pst007x@pst007x-Aspire-5741:~$ Thanks NOTE: AS SUGGESTED BELOW pst007x@pst007x-Aspire-5741:~$ file /home/pst007x/Applications/ClipGrab/clipgrab /bin/bash /home/pst007x/Applications/ClipGrab/clipgrab: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.15, BuildID[sha1]=0x22c8628796d72d721cf46293fe1d83b965de6df0, stripped /bin/bash: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.15, BuildID[sha1]=0x7ea55c6b94d32a06887081649ec990fd70700455, stripped pst007x@pst007x-Aspire-5741:~$ NOTE: AS SUGGESTED BELOW pst007x@pst007x-Aspire-5741:~/Applications/ClipGrab$ ls -l total 588 -rwxrwxrwx 1 pst007x pst007x 388096 Mar 26 14:50 clipgrab -rwxrwxr-x 1 pst007x pst007x 194397 Feb 11 04:07 clipgrab-3.1.3.0.bz2 -rwxrwxr-x 1 pst007x pst007x 15981 Feb 13 00:46 Clipgrab icon.jpg pst007x@pst007x-Aspire-5741:~/Applications/ClipGrab$ NOTE: AS SUGGESTED BELOW pst007x@pst007x-Aspire-5741:~$ cd /home/pst007x/Applications/ClipGrab/ pst007x@pst007x-Aspire-5741:~/Applications/ClipGrab$ ./clipgrab bash: ./clipgrab: No such file or directory pst007x@pst007x-Aspire-5741:

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  • Can AfferoGPLv3 code be used in GPLv3 code?

    - by Karel Bílek
    Can software with AGPLv3 license be used with GPLv3 project? Can the resulting project be GPLv3, or must it have the special requirements of AGPLv3? I am not very smart from clause 13 of GLPv3 that mentions AGPLv3. Notwithstanding any other provision of this License, you have permission to link or combine any covered work with a work licensed under version 3 of the GNU Affero General Public License into a single combined work, and to convey the resulting work. The terms of this License will continue to apply to the part which is the covered work, but the special requirements of the GNU Affero General Public License, section 13, concerning interaction through a network will apply to the combination as such. Must the resulting, combined work be AGPLv3 or not?

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  • How to replace nss with new version 11.10 64bit

    - by Gary S
    I need a specific version of NSS 3.12.4. I have a simple java crypto (Sun-pkcs11) test and it works with the default nss setup from Ubuntu 11. (pointing to /usr/lib/x86_64-linux-gnu where all the libnss*.so files live) But when I point specifically to the custom 3.12.4 lib folder, it doesn't work. The only way to get it to work is to set the LD_LIBRARY_PATH to point to the new folder. So what is the preferred way to 'swap in' a new nss module? Do I need to overwrite any matching .so files in /usr/lib and /usr/lib/x86_64-linux-gnu? Should I use an install command? Point is, I don't think I should have to use LD_LIBRARY_PATH.

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  • Unable to boot: Missing Operating system

    - by Vivek S Panicker
    i had installed Ubuntu 11.10 along with the another Ubuntu 11.10 which already installed in my netbook. Later I formatted the partition I newly installed. Next time when I boot it went to Grub Rescue menu. I boot my system again with Ubuntu USB stick, Then I installed Boot repair package in USB and restored MBR and GRUB menu in hard disk. Now when I am restarting, I am getting a message Missing operating system, press any key to continue. Can somebody help me on this? Below is the output for sudo fdisk -l omitting empty partition (7) Disk /dev/sda: 160.0 GB, 160041885696 bytes 255 heads, 63 sectors/track, 19457 cylinders, total 312581808 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x00058a60 Device Boot Start End Blocks Id System /dev/sda1 * 2048 204072287 102035120 83 Linux /dev/sda2 204072958 312580095 54253569 5 Extended /dev/sda5 310507520 312580095 1036288 82 Linux swap / Solaris /dev/sda6 308432896 310503423 1035264 82 Linux swap / Solaris Partition table entries are not in disk order Disk /dev/sdb: 4006 MB, 4006608896 bytes 124 heads, 62 sectors/track, 1017 cylinders, total 7825408 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x0004d3df Device Boot Start End Blocks Id System /dev/sdb1 * 62 7818695 3909317 b W95 FAT32 Below is the output for sudo blkid /dev/loop0: TYPE="squashfs" /dev/loop1: LABEL="casper-rw" UUID="533defb1-f073-254a-b46f-7ca0ac1f4e0c" TYPE="ext2" /dev/sda1: LABEL="Ubuntu" UUID="6a141040-3ba8-457a-9de5-ad06e6057084" TYPE="ext4" /dev/sda5: UUID="3a7f62d6-9c65-4d12-a3b6-5d62b9710f7d" TYPE="swap" /dev/sda6: UUID="274da115-cec2-4418-a1af-88fe921e3670" TYPE="swap" /dev/sdb1: LABEL="PENDRIVE" UUID="EC22-6BE4" TYPE="vfat" File /boot/grub/grub.cfg # # DO NOT EDIT THIS FILE # # It is automatically generated by grub-mkconfig using templates # from /etc/grub.d and settings from /etc/default/grub # ### BEGIN /etc/grub.d/00_header ### if [ -s $prefix/grubenv ]; then set have_grubenv=true load_env fi set default="0" if [ "${prev_saved_entry}" ]; then set saved_entry="${prev_saved_entry}" save_env saved_entry set prev_saved_entry= save_env prev_saved_entry set boot_once=true fi function savedefault { if [ -z "${boot_once}" ]; then saved_entry="${chosen}" save_env saved_entry fi } function recordfail { set recordfail=1 if [ -n "${have_grubenv}" ]; then if [ -z "${boot_once}" ]; then save_env recordfail; fi; fi } function load_video { insmod vbe insmod vga insmod video_bochs insmod video_cirrus } insmod part_msdos insmod ext2 set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 6a141040-3ba8-457a-9de5-ad06e6057084 if loadfont /usr/share/grub/unicode.pf2 ; then set gfxmode=auto load_video insmod gfxterm insmod part_msdos insmod ext2 set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 6a141040-3ba8-457a-9de5-ad06e6057084 set locale_dir=($root)/boot/grub/locale set lang=en_US insmod gettext fi terminal_output gfxterm if [ "${recordfail}" = 1 ]; then set timeout=10 else set timeout=10 fi ### END /etc/grub.d/00_header ### ### BEGIN /etc/grub.d/05_debian_theme ### set menu_color_normal=white/black set menu_color_highlight=black/light-gray if background_color 44,0,30; then clear fi ### END /etc/grub.d/05_debian_theme ### ### BEGIN /etc/grub.d/10_linux ### if [ ${recordfail} != 1 ]; then if [ -e ${prefix}/gfxblacklist.txt ]; then if hwmatch ${prefix}/gfxblacklist.txt 3; then if [ ${match} = 0 ]; then set linux_gfx_mode=keep else set linux_gfx_mode=text fi else set linux_gfx_mode=text fi else set linux_gfx_mode=keep fi else set linux_gfx_mode=text fi export linux_gfx_mode if [ "$linux_gfx_mode" != "text" ]; then load_video; fi menuentry 'Ubuntu, with Linux 3.0.0-12-generic' --class ubuntu --class gnu-linux --class gnu --class os { recordfail set gfxpayload=$linux_gfx_mode insmod gzio insmod part_msdos insmod ext2 set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 6a141040-3ba8-457a-9de5-ad06e6057084 linux /boot/vmlinuz-3.0.0-12-generic root=UUID=6a141040-3ba8-457a-9de5-ad06e6057084 ro quiet splash vt.handoff=7 initrd /boot/initrd.img-3.0.0-12-generic } menuentry 'Ubuntu, with Linux 3.0.0-12-generic (recovery mode)' --class ubuntu --class gnu-linux --class gnu --class os { recordfail insmod gzio insmod part_msdos insmod ext2 set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 6a141040-3ba8-457a-9de5-ad06e6057084 echo 'Loading Linux 3.0.0-12-generic ...' linux /boot/vmlinuz-3.0.0-12-generic root=UUID=6a141040-3ba8-457a-9de5-ad06e6057084 ro recovery nomodeset echo 'Loading initial ramdisk ...' initrd /boot/initrd.img-3.0.0-12-generic } ### END /etc/grub.d/10_linux ### ### BEGIN /etc/grub.d/20_linux_xen ### ### END /etc/grub.d/20_linux_xen ### ### BEGIN /etc/grub.d/20_memtest86+ ### menuentry "Memory test (memtest86+)" { insmod part_msdos insmod ext2 set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 6a141040-3ba8-457a-9de5-ad06e6057084 linux16 /boot/memtest86+.bin } menuentry "Memory test (memtest86+, serial console 115200)" { insmod part_msdos insmod ext2 set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 6a141040-3ba8-457a-9de5-ad06e6057084 linux16 /boot/memtest86+.bin console=ttyS0,115200n8 } ### END /etc/grub.d/20_memtest86+ ### ### BEGIN /etc/grub.d/30_os-prober ### ### END /etc/grub.d/30_os-prober ### ### BEGIN /etc/grub.d/40_custom ### # This file provides an easy way to add custom menu entries. Simply type the # menu entries you want to add after this comment. Be careful not to change # the 'exec tail' line above. ### END /etc/grub.d/40_custom ### ### BEGIN /etc/grub.d/41_custom ### if [ -f $prefix/custom.cfg ]; then source $prefix/custom.cfg; fi ### END /etc/grub.d/41_custom ###

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  • Multiple version of Grub?

    - by DanielGibbs
    I am running Ubuntu 12.04.1 LTS (GNU/Linux 3.2.0-29-generic-pae i686) which according to the Ubuntu documentation contains Grub2. However grub --version gives me grub (GNU GRUB 0.97), but grub-mkconfig --version gives me grub-mkconfig (GRUB) 1.99-21ubuntu3.4 Do I have 2 versions of Grub installed simultaneously? If so, what is the easiest and safest way to remove one. If not, which configuration file should I edit? I have edited /etc/grub.d/40_custom to contain a password, but running update-grub does not appear to include this in the grub.cfg file.

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  • Can't see my partitions after grub recovery

    - by dimbo
    I stupidly inserted the windows CD into my dual boot Ubuntu 11.10 / windows xp system. I just wanted to see if I could install windows on my external usb HD, but didn't actually go ahead with the install. It seems like the windows CD messed up my MBR and I had to use boot-repair and the ubuntu 11.10 live CD to gain access to ubuntu again. It seems to boot up a little differently (slower) but works. However, I now cant see any of my partitions in nautilus (there are 3). When I open gparted, it just shows my whole hard drive as unallocated (I know it has a windows partition that works and my ubuntu partition that I am using now). If I insert a usb pen, it is also not visible in nautilus but in gparted shows up as a FAT32 partition (which is correct although I cannot access it). sudo fdisk -l gives the following : demian@dimbo-TP:~$ sudo fdisk -l [sudo] password for demian: omitting empty partition (5) Disk /dev/sda: 320.1 GB, 320072933376 bytes 240 heads, 63 sectors/track, 41345 cylinders, total 625142448 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x877b877b Device Boot Start End Blocks Id System /dev/sda1 * 63 63842309 31921123+ 7 HPFS/NTFS/exFAT /dev/sda2 63844350 133484084 34819867+ 5 Extended /dev/sda3 127636488 133484084 2923798+ 82 Linux swap / Solaris /dev/sda4 133484085 625137344 245826630 83 Linux /dev/sda5 63844352 123445247 29800448 83 Linux /dev/sda6 123447296 127635455 2094080 82 Linux swap / Solaris Disk /dev/sdb: 8100 MB, 8100249600 bytes 12 heads, 40 sectors/track, 32960 cylinders, total 15820800 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0xc3072e18 Device Boot Start End Blocks Id System /dev/sdb1 * 5992 15820799 7907404 c W95 FAT32 (LBA) Here is my grub.conf file. Like I said before, I had to use the 'boot-repair' utility with the live cd to get grub working again. I think that this utility maybe created a new grub for me because the startup is definitely not the same. The screen goes blank for a while, and then the ubuntu loading dots come up for a brief moment (instead of during the whole startup process) before the dektop is displayed. Anyway : # DO NOT EDIT THIS FILE # # It is automatically generated by grub-mkconfig using templates # from /etc/grub.d and settings from /etc/default/grub # ### BEGIN /etc/grub.d/00_header ### if [ -s $prefix/grubenv ]; then set have_grubenv=true load_env fi set default="0" if [ "${prev_saved_entry}" ]; then set saved_entry="${prev_saved_entry}" save_env saved_entry set prev_saved_entry= save_env prev_saved_entry set boot_once=true fi function savedefault { if [ -z "${boot_once}" ]; then saved_entry="${chosen}" save_env saved_entry fi } function recordfail { set recordfail=1 if [ -n "${have_grubenv}" ]; then if [ -z "${boot_once}" ]; then save_env recordfail; fi; fi } function load_video { insmod vbe insmod vga insmod video_bochs insmod video_cirrus } insmod part_msdos insmod ext2 set root='(hd0,msdos6)' search --no-floppy --fs-uuid --set=root 5349ff67-b7b7-489f-a881-ae49c1dcd84a if loadfont /usr/share/grub/unicode.pf2 ; then set gfxmode=auto load_video insmod gfxterm insmod part_msdos insmod ext2 set root='(hd0,msdos6)' search --no-floppy --fs-uuid --set=root 5349ff67-b7b7-489f-a881-ae49c1dcd84a set locale_dir=($root)/boot/grub/locale set lang=en_US insmod gettext fi terminal_output gfxterm if [ "${recordfail}" = 1 ]; then set timeout=10 else set timeout=10 fi ### END /etc/grub.d/00_header ### ### BEGIN /etc/grub.d/05_debian_theme ### set menu_color_normal=white/black set menu_color_highlight=black/light-gray if background_color 44,0,30; then clear fi ### END /etc/grub.d/05_debian_theme ### ### BEGIN /etc/grub.d/10_linux ### if [ ${recordfail} != 1 ]; then if [ -e ${prefix}/gfxblacklist.txt ]; then if hwmatch ${prefix}/gfxblacklist.txt 3; then if [ ${match} = 0 ]; then set linux_gfx_mode=keep else set linux_gfx_mode=text fi else set linux_gfx_mode=text fi else set linux_gfx_mode=keep fi else set linux_gfx_mode=text fi export linux_gfx_mode if [ "$linux_gfx_mode" != "text" ]; then load_video; fi menuentry 'Ubuntu, with Linux 3.0.0-12-generic' --class ubuntu --class gnu-linux --class gnu --class os { recordfail set gfxpayload=$linux_gfx_mode insmod gzio insmod part_msdos insmod ext2 set root='(hd0,msdos6)' search --no-floppy --fs-uuid --set=root 5349ff67-b7b7-489f-a881-ae49c1dcd84a linux /boot/vmlinuz-3.0.0-12-generic root=UUID=5349ff67-b7b7-489f-a881-ae49c1dcd84a ro quiet splash vt.handoff=7 initrd /boot/initrd.img-3.0.0-12-generic } menuentry 'Ubuntu, with Linux 3.0.0-12-generic (recovery mode)' --class ubuntu --class gnu-linux --class gnu --class os { recordfail insmod gzio insmod part_msdos insmod ext2 set root='(hd0,msdos6)' search --no-floppy --fs-uuid --set=root 5349ff67-b7b7-489f-a881-ae49c1dcd84a echo 'Loading Linux 3.0.0-12-generic ...' linux /boot/vmlinuz-3.0.0-12-generic root=UUID=5349ff67-b7b7-489f-a881-ae49c1dcd84a ro recovery nomodeset echo 'Loading initial ramdisk ...' initrd /boot/initrd.img-3.0.0-12-generic } ### END /etc/grub.d/10_linux ### ### BEGIN /etc/grub.d/20_linux_xen ### ### END /etc/grub.d/20_linux_xen ### ### BEGIN /etc/grub.d/20_memtest86+ ### menuentry "Memory test (memtest86+)" { insmod part_msdos insmod ext2 set root='(hd0,msdos6)' search --no-floppy --fs-uuid --set=root 5349ff67-b7b7-489f-a881-ae49c1dcd84a linux16 /boot/memtest86+.bin } menuentry "Memory test (memtest86+, serial console 115200)" { insmod part_msdos insmod ext2 set root='(hd0,msdos6)' search --no-floppy --fs-uuid --set=root 5349ff67-b7b7-489f-a881-ae49c1dcd84a linux16 /boot/memtest86+.bin console=ttyS0,115200n8 } ### END /etc/grub.d/20_memtest86+ ### ### BEGIN /etc/grub.d/30_os-prober ### menuentry "Microsoft Windows XP Professional (on /dev/sda1)" --class windows --class os { insmod part_msdos insmod ntfs set root='(hd0,msdos1)' search --no-floppy --fs-uuid --set=root 72A89361A89322A1 drivemap -s (hd0) ${root} chainloader +1 } ### END /etc/grub.d/30_os-prober ### ### BEGIN /etc/grub.d/40_custom ### # This file provides an easy way to add custom menu entries. Simply type the # menu entries you want to add after this comment. Be careful not to change # the 'exec tail' line above. ### END /etc/grub.d/40_custom ### ### BEGIN /etc/grub.d/41_custom ### if [ -f $prefix/custom.cfg ]; then source $prefix/custom.cfg; fi ### END /etc/grub.d/41_custom ### How can I get things back to normal. Thanks, Demian.

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  • jQuery modifie ses licences et ne garde que la licence MIT

    jQuery modifie ses licences et ne garde que la licence MIT. La fondation jQuery a décidé de modifier sa gestion de licence. Elle abandonne la licence GNU General Public pour ne garder que la licence MIT. Cela lui permet d'éliminer la confusion qui existait sur la politique de double licence. Du côté des utilisateurs, ça ne change pas grand chose. L'utilisateur reste libre d'utiliser des projets de la fondation, de les modifier et même de les repasser en licence GPL si ça l'enchante. Effectivement, la licence MIT est tout à fait compatible avec licence GNU GPL. Il faut savoir qu'il y a plus de 500 personnes qui ont contribués aux projets jQuery. La fondation souhaite q...

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  • Installing Cairo to get FastRWeb working for R gWidgetsWWW2 -pkg

    - by hhh
    I want to install FastRWeb for R but it requires some Cairo. How can I install the Cairo? compilation terminated. make: *** [xlib-backend.o] Error 1 ERROR: compilation failed for package ‘Cairo’ * removing ‘/home/xfz/R/i686-pc-linux-gnu-library/2.13/Cairo’ ERROR: dependency ‘Cairo’ is not available for package ‘FastRWeb’ * removing ‘/home/xfz/R/i686-pc-linux-gnu-library/2.13/FastRWeb’ The downloaded packages are in ‘/tmp/Rtmpno8hhF/downloaded_packages’ Warning messages: 1: In install.packages("FastRWeb", , "http://rforge.net/", type = "source") : installation of package 'Cairo' had non-zero exit status 2: In install.packages("FastRWeb", , "http://rforge.net/", type = "source") : installation of package 'FastRWeb' had non-zero exit status I cannot find what the Cairo is here, 16 entries with this search term below. It is apparently some library. $ apt-cache search libcairo|wc 16 132 996 Perhaps related http://stackoverflow.com/questions/9826128/r-making-r-rook-program-into-rscript-program-r http://stackoverflow.com/questions/9812547/r-gui-vizualiser-with-command-line-access-browser-based-letting-users-to-s Some related packages FastRWeb and RServe for the gWidgetsWWW2 -pkg.

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  • Active - like-minded Java mailing lists

    - by Lewis Robbins
    I need to find an active Java mailing list, I have looked onto the GNU Java mailing list, to my surprise there had been not too much activity this month, it also focused on any GNU related Java - I'd really help me progress my Java ability, if I had an active, likeminded Java mailing list. Questions' that are not suited to Stackoverflow, or provide little benefit to any user that see's the question: discussing a new API change; best practices; open source discussion; trivia type questions on Java ArrayList boxining-unboxing; Community atmosphere. I also read Jon Skeets blog post about his previous Java/C# mailing lists examples - I did not catch any names, though I did they would be of benefit to me, if I had access to any of them.

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  • 7-Zip - A Free alternative to other compression utilities

    - by TATWORTH
    At http://www.7-zip.org/download.html, there is a free alternative other compression utilities. It handles a wide variety of formats including RAR!Here is the description from its home page:License 7-Zip is open source software. Most of the source code is under the GNU LGPL license. The unRAR code is under a mixed license: GNU LGPL + unRAR restrictions. Check license information here: 7-Zip license. You can use 7-Zip on any computer, including a computer in a commercial organization. You don't need to register or pay for 7-Zip. The main features of 7-Zip High compression ratio in 7z format with LZMA and LZMA2 compressionSupported formats: Packing / unpacking: 7z, XZ, BZIP2, GZIP, TAR, ZIP and WIMUnpacking only: ARJ, CAB, CHM, CPIO, CramFS, DEB, DMG, FAT, HFS, ISO, LZH, LZMA, MBR, MSI, NSIS, NTFS, RAR, RPM, SquashFS, UDF, VHD, WIM, XAR and Z. For ZIP and GZIP formats, 7-Zip provides a compression ratio that is 2-10 % better than the ratio provided by PKZip and WinZipStrong AES-256 encryption in 7z and ZIP formatsSelf-extracting capability for 7z formatIntegration with Windows ShellPowerful File ManagerPowerful command line versionPlugin for FAR ManagerLocalizations for 79 languages

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  • Placing of copyright notice in source code

    - by Diana Dcn
    I'm about to release a project of mine that I'm really proud of under the GNU GPL and I have some questions: Should one attach a copyright notice on each and every source code file from their project? I think it's a bit ridiculous to claim copyright on a 3 line abstract class. Should I attach a copyright notice only to really important source code files? Can I not attach the whole standard thingy? Because it's big and bulky and gets in the way... If so, is the variant below ok/enough? Copyright year firstname lastname. This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation.

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  • Once installed geos library (C++, and C), and then trying to install rgeos package (R), it reports geos-config missing!

    - by user1873888
    Knowing that the package rgeos, from the R language, requieres a prior installation of geos libraries, I installed, both, libgeos and libgeos-c1 (3.2.2), using the synaptic installer in my Ubuntu 12.04 (32 bit) machine. Then I tried to install rgeos directly from the R console, and it issued a message in the sense that geos-config was not found. The output is as follows: > install.packages("rgeos") Installing package(s) into ‘/home/checo/R/i486-pc-linux-gnu-library/2.15’ (as ‘lib’ is unspecified) also installing the dependency ‘sp’ probando la URL 'http://cran.rstudio.com/src/contrib/sp_1.0-9.tar.gz' Content type 'application/x-gzip' length 882102 bytes (861 Kb) URL abierta ================================================== downloaded 861 Kb probando la URL 'http://cran.rstudio.com/src/contrib/rgeos_0.2-19.tar.gz' Content type 'application/x-gzip' length 221471 bytes (216 Kb) URL abierta ================================================== downloaded 216 Kb * installing *source* package ‘sp’ ... ** package ‘sp’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c R centroid.c -o Rcentroid.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c gcdist.c -o gcdist.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pip.c -o pip.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pip2.c -o pip2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c sp_xports.c -o sp_xports.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c surfaceArea.c -o surfaceArea.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c zerodist.c -o zerodist.o gcc -std=gnu99 -shared -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/usr/lib/R/lib -lR installing to /home/checo/R/i486-pc-linux-gnu-library/2.15/sp/libs ** R ** data ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘intro_sp.Rnw’ ‘over.Rnw’ ** testing if installed package can be loaded * DONE (sp) * installing *source* package ‘rgeos’ ... ** package ‘rgeos’ successfully unpacked and MD5 sums checked configure: CC: gcc -std=gnu99 configure: CXX: g++ configure: rgeos: 0.2-17 checking for /usr/bin/svnversion... no configure: svn revision: 394 checking geos-config usability... ./configure: line 1385: geos-config: command not found no configure: error: geos-config not usable ERROR: configuration failed for package ‘rgeos’ * removing ‘/home/checo/R/i486-pc-linux-gnu-library/2.15/rgeos’ Warning in install.packages : installation of package ‘rgeos’ had non-zero exit status Forgive my ignorance, but I don't know where this file, "geos-config", comes from: should it be generated by the gcc compilations above, or should it be previously installed when the libgeos libraries were intalled? I learnt, from another machine, that "geos-config" is an executable and that it should be installed in /usr/bin. Do you have any idea on what's wrong with my procedure? Thanks, -Sergio.

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  • Window decoration of emacs23 window on fluxbox is outside screen

    - by mit
    I am starting emacs remotely over an ssh connection. But on the emacs window I cannot find a way to resize or move it. There is no fluxbox title bar visible, and I guess the title bar is above the visible viewport, because emacs starts vertically with more height than the screen has. The lower border of the emacs window is also below the viewport border, so I cannot resize the window. I am starting emacs like this: emacs23 This is the emacs version: This is GNU Emacs 23.1.1 (x86_64-pc-linux-gnu, GTK+ Version 2.20.0) of 2010-03-29 on yellow, modified by Debian The remote system that runs emacs is 10.04 Lucid Lynx amd64. The local system is running 9.10 Karmic Koala 32 bit and Fluxbox 1.1.1-2

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  • I Can't run the Netbeans but I installed successfully

    - by David
    I'm new to Ubuntu as well as Netbeans. I installed Netbeans, and I've made sure to install all the JDKs and JREs I could find. It installed without errors. I also saw this question and made sure I followed all the instructions there as well. I never got any error messages of any kind. So far as I know, it installed okay. However, when I try to run Netbeans, I get the message in the bottom of the Netbeans IDE like this: ant -f /root/NetBeansProjects/samp1 -Djsp.includes=/root/NetBeansProjects/samp1/build/web/one.jsp -DforceRedeploy=false -Dclient.urlPart=/one.jsp -Ddirectory.deployment.supported=true -Djavac.jsp.includes=org/apache/jsp/one_jsp.java -Dnb.wait.for.caches=true run /root/NetBeansProjects/samp1/nbproject/build-impl.xml:774: The libs.CopyLibs.classpath property is not set up. This property must point to org-netbeans-modules-java-j2seproject-copylibstask.jar file which is part of NetBeans IDE installation and is usually located at <netbeans_installation>/java<version>/ant/extra folder. Either open the project in the IDE and make sure CopyLibs library exists or setup the property manually. For example like this: ant -Dlibs.CopyLibs.classpath=a/path/to/org-netbeans-modules-java-j2seproject-copylibstask.jar BUILD FAILED (total time: 0 seconds)

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  • Grub2 with BURG: duplicate Windows entries, how do I remove one?

    - by Tomas Lycken
    I have a dual boot system with Ubuntu 12.04 and Windows 7, using GRUB2 (with Burg) as boot loader. For some reason, the Windows installation shows up twice in the boot menu: Ubuntu GNU/Linux, with Linux 3.2.0-24-generic Ubuntu GNU/Linux, with Linux 3.2.0-24-generic (recovery mode) Windows 7 (loader) (on /dev/sda1) Windows 7 (loader) (on /dev/sda2) If I look in my partition table, /dev/sda2 is C:\ of the Windows installation, and /dev/sda1 is the "System Reserved" partition (which, IIRC, is Windows' own bootloader). Furthermore, gparted shows /dev/sda2 - but no other partitions - with a boot flag: What is going on here? I'd like to have only the entries for Ubuntu and one entry for Windows in my boot menu - how do I remove one of them?

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  • For some reason I can't get ATI FGLRX Drivers to support 3D acceleration on Ubuntu 12.04

    - by HungryMan
    I have an ATI 5650m and I've had 0 issues with 3D Acceleration in the past. I had to reinstall Ubuntu entirely, and now with the 12.6 drivers I get - One or more tools required for installation cannot be found on the system I can't seem to solve this issue. I installed the FGLRX drivers through the "alternate command line" guide on the Ubuntu Wiki including the instructions for getting 3D support. They seem to install but I get an error with vainfo libva: VA-API version 0.32.0 Xlib: extension "XFree86-DRI" missing on display ":0.0". libva: va_getDriverName() returns 0 libva: Trying to open /usr/lib/x86_64-linux-gnu/dri/fglrx_drv_video.so libva error: /usr/lib/x86_64-linux-gnu/dri/fglrx_drv_video.so init failed libva: va_openDriver() returns -1 vaInitialize failed with error code -1 (unknown libva error),exit I have tried help here: http://ubuntuforums.org/showthread.php?t=2014440 It's a bit frustrating as I can do basically nothing without 3D support. I can't use super + direction or super + w or even configure the Unity bar to be 32px. If anyone could help I'd appreciate that.

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  • Application trying to use the wrong shared library

    - by Josh
    I'm having a problem with a program (quartus) running on my ubuntu machine. I'm getting the following error. quartus: symbol lookup error: /usr/lib/i386-linux-gnu/libXi.so: undefined symbol: XESetWireToEventCookie I have the correct libXi.so.6.0.0 file but no matter where I put it, the OS won't use it unless I apt-get remove libxi-dev, but a lot of software uses this libXi. What I want to do is add some sort of exception to the dynamic linker so that quartus uses the libXi.so that it needs and everything else still uses the one in /usr/lib/i386-linux-gnu. Thanks!

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  • nothing happen after a command mount -t (worked before)

    - by user3449429
    i'm having a weird problem. i used to lauch manually the mount command to link a folder on my PLEX server with a folder on my NAS since yesterday it was ok, but i had to halt my plex server and when i tried to mount again the folder, nothing happen. it ask me the su password and that's all. here the command i use in my fstab: //192.168.1.2/Series_TV /home/cidou/Series_TV cifs _netdev,credentials=/home/cidou/.smbcredentials 0 0 //192.168.1.2/films /home/cidou/Films cifs _netdev,credentials=/home/cidou/.smbcredentials 0 0 i tried this command too: sudo mount -t smbfs //192.168.1.2/Films /home/cidou/Films -o user=myname,password=mypass,sec=ntlm --verbose i run an ubuntu 12.04 LTS uname -a Linux plex 3.8.0-29-generic #42~precise1-Ubuntu SMP Wed Aug 14 15:31:16 UTC 2013 i686 i686 i386 GNU/Linux Welcome to Ubuntu 12.04.4 LTS (GNU/Linux 3.8.0-29-generic i686) * Documentation: https://help.ubuntu.com/ System information disabled due to load higher than 2.0 Thanks for reading

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  • I can't install kbibtex (KD4)

    - by kacikuama
    I have ubuntu 11.10 and am trying to install the latest version of kbibtex but I can't do it. Anyone know how to do? I downloaded the tar.bz2 file from KD4 page (http://home.gna.org/kbibtex/download.html), followed the instructions but I get the following error: ~/kbibtex-0.4-beta1/build$ cmake ../ -DCMAKE_INSTALL_PREFIX=home -DCMAKE_BUILD_TYPE=BUILD_TYPE && make -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done CMake Error at /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:91 (MESSAGE): Could NOT find Qt4 (missing: QT_QMAKE_EXECUTABLE QT_MOC_EXECUTABLE QT_RCC_EXECUTABLE QT_UIC_EXECUTABLE QT_INCLUDE_DIR QT_LIBRARY_DIR QT_QTCORE_LIBRARY) Call Stack (most recent call first): /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:252 (_FPHSA_FAILURE_MESSAGE) /usr/share/cmake-2.8/Modules/FindQt4.cmake:1162 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:7 (find_package) -- Configuring incomplete, errors occurred! Someone can give me an idea of ??what's going on?

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  • No sound in World of Goo?

    - by user37805
    I installed WorldOfGooSetup.1.41.deb and it didn't work. There was a segmentation fault error (core dumped) in terminal. I fixed that with: sudo cp /usr/lib/x86_64-linux-gnu/libvorbis.so.* /opt/WorldOfGoo/libs32 sudo cp /usr/lib/x86_64-linux-gnu/libvorbis.so.* /opt/WorldOfGoo/libs64 That error is new for me as I have never had it before with previous releases of Ubuntu. The game starts now but no sound effects or music is played. I can hear music with my computer, videos, etc, so it is not a volume control problem. I am using ubuntu 12.04 final release.

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  • Application of LGPL license on a simple algorithm

    - by georgesl
    The "scope" of the GNU license is troubling me : I know it has been answered many times ( here, here, ... ) but shouldn't we take into consideration the complexity and originality of a code before using GPL license ? I explain : I'm working on a pet project using the DTW algorithm that I have written in C using the pseudo-code given on the wikipedia page . At one point I decided to change it for a C++ implementation ( just for hone my c++ skill ) . After doing so, I've looked for an existing implementation on the web, to compare the "cleanliness" of it, and I found this one : Vectored DTW implementation, which is part of limproved, a C++ library licensed under GPL v3 . Personnally, I don't mind the GNU license because it is a personnal project, which will never led to any kind of commercial purpose, but I wonder if this implementation can abide a company using it to open their code ( and other FOSS permissions ). Theoretically, I think it can ( I may be wrong :p ), but the algorithm in question is so simple (and old) that it should not.

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  • maven sonar problem

    - by senzacionale
    I want to use sonar for analysis but i can't get any data in localhost:9000 <?xml version="1.0" encoding="UTF-8"?> <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> <modelVersion>4.0.0</modelVersion> <artifactId>KIS</artifactId> <groupId>KIS</groupId> <version>1.0</version> <build> <plugins> <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-antrun-plugin</artifactId> <version>1.4</version> <executions> <execution> <id>compile</id> <phase>compile</phase> <configuration> <tasks> <property name="compile_classpath" refid="maven.compile.classpath"/> <property name="runtime_classpath" refid="maven.runtime.classpath"/> <property name="test_classpath" refid="maven.test.classpath"/> <property name="plugin_classpath" refid="maven.plugin.classpath"/> <ant antfile="${basedir}/build.xml"> <target name="maven-compile"/> </ant> </tasks> </configuration> <goals> <goal>run</goal> </goals> </execution> </executions> </plugin> </plugins> </build> </project> output when running sonar: jar file is empty [INFO] Executed tasks [INFO] [resources:testResources {execution: default-testResources}] [WARNING] Using platform encoding (Cp1250 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] skip non existing resourceDirectory J:\ostalo_6i\KIS deploy\ANT\src\test\resources [INFO] [compiler:testCompile {execution: default-testCompile}] [INFO] No sources to compile [INFO] [surefire:test {execution: default-test}] [INFO] No tests to run. [INFO] [jar:jar {execution: default-jar}] [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: J:\ostalo_6i\KIS deploy\ANT\target\KIS-1.0.jar [INFO] [install:install {execution: default-install}] [INFO] Installing J:\ostalo_6i\KIS deploy\ANT\target\KIS-1.0.jar to C:\Documents and Settings\MitjaG\.m2\repository\KIS\KIS\1.0\KIS-1.0.jar [INFO] ------------------------------------------------------------------------ [INFO] Building Unnamed - KIS:KIS:jar:1.0 [INFO] task-segment: [sonar:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar {execution: default-cli}] [INFO] Sonar host: http://localhost:9000 [INFO] Sonar version: 2.1.2 [INFO] [sonar-core:internal {execution: default-internal}] [INFO] Database dialect class org.sonar.api.database.dialect.Oracle [INFO] ------------- Analyzing Unnamed - KIS:KIS:jar:1.0 [INFO] Selected quality profile : KIS, language=java [INFO] Configure maven plugins... [INFO] Sensor SquidSensor... [INFO] Sensor SquidSensor done: 16 ms [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 0 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 15 ms [INFO] Sensor SurefireSensor... [INFO] parsing J:\ostalo_6i\KIS deploy\ANT\target\surefire-reports [INFO] Sensor SurefireSensor done: 47 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 16 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 0 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 31 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 0 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 16 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:9000 [INFO] Database optimization... [INFO] Database optimization done: 172 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 minutes 16 seconds [INFO] Finished at: Fri Jun 11 08:28:26 CEST 2010 [INFO] Final Memory: 24M/43M [INFO] ------------------------------------------------------------------------ any idea why, i successfully compile with maven ant plugin java project.

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  • Bewildering SegFault involving STL sort algorithm.

    - by just_wes
    Hello everybody, I am completely perplexed at a seg fault that I seem to be creating. I have: vector<unsigned int> words; and global variable string input; I define my custom compare function: bool wordncompare(unsigned int f, unsigned int s) { int n = k; while (((f < input.size()) && (s < input.size())) && (input[f] == input[s])) { if ((input[f] == ' ') && (--n == 0)) { return false; } f++; s++; } return true; } When I run the code: sort(words.begin(), words.end()); The program exits smoothly. However, when I run the code: sort(words.begin(), words.end(), wordncompare); I generate a SegFault deep within the STL. The GDB back-trace code looks like this: #0 0x00007ffff7b79893 in std::string::size() const () from /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/libstdc++.so.6 #1 0x0000000000400f3f in wordncompare (f=90, s=0) at text_gen2.cpp:40 #2 0x000000000040188d in std::__unguarded_linear_insert<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, unsigned int, bool (*)(unsigned int, unsigned int)> (__last=..., __val=90, __comp=0x400edc <wordncompare(unsigned int, unsigned int)>) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4/bits/stl_algo.h:1735 #3 0x00000000004018df in std::__unguarded_insertion_sort<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, bool (*)(unsigned int, unsigned int)> (__first=..., __last=..., __comp=0x400edc <wordncompare(unsigned int, unsigned int)>) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4/bits/stl_algo.h:1812 #4 0x0000000000402562 in std::__final_insertion_sort<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, bool (*)(unsigned int, unsigned int)> (__first=..., __last=..., __comp=0x400edc <wordncompare(unsigned int, unsigned int)>) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4/bits/stl_algo.h:1845 #5 0x0000000000402c20 in std::sort<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, bool (*)(unsigned int, unsigned int)> (__first=..., __last=..., __comp=0x400edc <wordncompare(unsigned int, unsigned int)>) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4/bits/stl_algo.h:4822 #6 0x00000000004012d2 in main (argc=1, args=0x7fffffffe0b8) at text_gen2.cpp:70 I have similar code in another program, but in that program I am using a vector instead of vector. For the life of me I can't figure out what I'm doing wrong. Thanks!

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  • Error 2013: Lost connection to MySQL server during query when executing CHECK TABLE FOR UPGRADE

    - by Dean Richardson
    I just upgraded Ubuntu from 11.10 to 12.04. My rails app now returns the (passenger) error "Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (111) (Mysql2::Error)". I get a similar error when I try to access mysql at the command line on my Ubuntu server using mysql -u root -p. I have mysql-server 5.5 installed. I've checked and mysql is not running. When I try to restart it, it fails. Here are some key lines from the tail of /var/log/syslog after an attempted restart: dean@dgwjasonfried:/etc/mysql$ tail -f /var/log/syslog Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: Looking for 'mysqlcheck' as: /usr/bin/mysqlcheck Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: /usr/bin/mysqlcheck: Got error: 2013: Lost connection to MySQL server during query when executing 'CHECK TABLE ... FOR UPGRADE' Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: FATAL ERROR: Upgrade failed Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: molex_app_development.assets OK Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: molex_app_development.ecd_types OK Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5124]: Checking for insecure root accounts. Mar 7 08:55:27 dgwjasonfried kernel: [ 7551.769657] init: mysql main process (5064) terminated with status 1 Mar 7 08:55:27 dgwjasonfried kernel: [ 7551.769697] init: mysql respawning too fast, stopped Here is most of /etc/mysql/my.cnf: Remember to edit /etc/mysql/debian.cnf when changing the socket location. [client] port = 3306 socket = /var/run/mysqld/mysqld.sock Here is entries for some specific programs The following values assume you have at least 32M ram This was formally known as [safe_mysqld]. Both versions are currently parsed. [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] Basic Settings user = mysql pid-file = /var/run/mysqld/mysqld.pid socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp lc-messages-dir = /usr/share/mysql skip-external-locking Instead of skip-networking the default is now to listen only on localhost which is more compatible and is not less secure. bind-address = 127.0.0.1 And here are permissions for var/run/mysqld/mysqld.sock: srwxrwxrwx 1 mysql mysql 0 Mar 7 09:18 mysqld.sock I'd be grateful for any suggestions the community might have. I reviewed the related questions here and attempted some of the fixes offered but to no avail. Thanks! Dean Richardson Update: Thanks to quanta's suggestion, I looked at the /var/log/mysql/error.log file. I found error messages relating to pointers, fatal signals, and more stuff that I really couldn't make much sense of. I also found mysql man page references, however. One suggested that I try starting mysqld with the --innodb_force_recovery=# option, then attempt to dump (or drop) the offending/corrupted database or table. I worked through the escalating option levels one-by-one (innodb_force_recovery=1, innodb_force_recovery=2, etc.) This allowed me to successfully run mysql -u root -p from the command line and execute several commands. I was able to run queries on my production database, but any attempt to query, dump, or even drop my development database raised an error and led to me losing the connection to mysql. So I've made progress, but until I'm somehow able to drop or repair my development db I'm still unable to get my app to load. Any further advice or suggestions? Thanks! Dean Update: Right after running sudo mysqld --innodb_force_recover=1 from the command line, the error.log contains this: Right after retrying sudo mysqld --innodb_force_recover=1, The error.log file shows this: 130308 4:55:39 [Note] Plugin 'FEDERATED' is disabled. 130308 4:55:39 InnoDB: The InnoDB memory heap is disabled 130308 4:55:39 InnoDB: Mutexes and rw_locks use GCC atomic builtins 130308 4:55:39 InnoDB: Compressed tables use zlib 1.2.3.4 130308 4:55:39 InnoDB: Initializing buffer pool, size = 128.0M 130308 4:55:39 InnoDB: Completed initialization of buffer pool 130308 4:55:39 InnoDB: highest supported file format is Barracuda. InnoDB: The log sequence number in ibdata files does not match InnoDB: the log sequence number in the ib_logfiles! 130308 4:55:39 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... 130308 4:55:40 InnoDB: Waiting for the background threads to start 130308 4:55:41 InnoDB: 1.1.8 started; log sequence number 10259220 130308 4:55:41 InnoDB: !!! innodb_force_recovery is set to 1 !!! 130308 4:55:41 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306 130308 4:55:41 [Note] - '127.0.0.1' resolves to '127.0.0.1'; 130308 4:55:41 [Note] Server socket created on IP: '127.0.0.1'. 130308 4:55:41 [Note] Event Scheduler: Loaded 0 events 130308 4:55:41 [Note] mysqld: ready for connections. Version: '5.5.29-0ubuntu0.12.04.2' socket: '/var/run/mysqld/mysqld.sock' port: 3306 (Ubuntu) Then after mysql -u root -p and mysql> drop database molex_app_development; ERROR 2013 (HY000): Lost connection to MySQL server during query mysql> the error.log contains: dean@dgwjasonfried:/var/log/mysql$ tail -f error.log /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f6a3ff9ecbd] Trying to get some variables. Some pointers may be invalid and cause the dump to abort. Query (7f6a1c004bd8): is an invalid pointer Connection ID (thread ID): 1 Status: NOT_KILLED The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains information that should help you find out what is causing the crash. 130308 4:55:39 [Note] Plugin 'FEDERATED' is disabled. 130308 4:55:39 InnoDB: The InnoDB memory heap is disabled 130308 4:55:39 InnoDB: Mutexes and rw_locks use GCC atomic builtins 130308 4:55:39 InnoDB: Compressed tables use zlib 1.2.3.4 130308 4:55:39 InnoDB: Initializing buffer pool, size = 128.0M 130308 4:55:39 InnoDB: Completed initialization of buffer pool 130308 4:55:39 InnoDB: highest supported file format is Barracuda. InnoDB: The log sequence number in ibdata files does not match InnoDB: the log sequence number in the ib_logfiles! 130308 4:55:39 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... 130308 4:55:40 InnoDB: Waiting for the background threads to start 130308 4:55:41 InnoDB: 1.1.8 started; log sequence number 10259220 130308 4:55:41 InnoDB: !!! innodb_force_recovery is set to 1 !!! 130308 4:55:41 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306 130308 4:55:41 [Note] - '127.0.0.1' resolves to '127.0.0.1'; 130308 4:55:41 [Note] Server socket created on IP: '127.0.0.1'. 130308 4:55:41 [Note] Event Scheduler: Loaded 0 events 130308 4:55:41 [Note] mysqld: ready for connections. Version: '5.5.29-0ubuntu0.12.04.2' socket: '/var/run/mysqld/mysqld.sock' port: 3306 (Ubuntu) 130308 4:58:23 [ERROR] Incorrect definition of table mysql.proc: expected column 'comment' at position 15 to have type text, found type char(64). 130308 4:58:23 InnoDB: Assertion failure in thread 140168992810752 in file fsp0fsp.c line 3639 InnoDB: We intentionally generate a memory trap. InnoDB: Submit a detailed bug report to http://bugs.mysql.com. InnoDB: If you get repeated assertion failures or crashes, even InnoDB: immediately after the mysqld startup, there may be InnoDB: corruption in the InnoDB tablespace. Please refer to InnoDB: http://dev.mysql.com/doc/refman/5.5/en/forcing-innodb-recovery.html InnoDB: about forcing recovery. 10:58:23 UTC - mysqld got signal 6 ; This could be because you hit a bug. It is also possible that this binary or one of the libraries it was linked against is corrupt, improperly built, or misconfigured. This error can also be caused by malfunctioning hardware. We will try our best to scrape up some info that will hopefully help diagnose the problem, but since we have already crashed, something is definitely wrong and this may fail. key_buffer_size=16777216 read_buffer_size=131072 max_used_connections=1 max_threads=151 thread_count=1 connection_count=1 It is possible that mysqld could use up to key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 346681 K bytes of memory Hope that's ok; if not, decrease some variables in the equation. Thread pointer: 0x7f7ba4f6c2f0 Attempting backtrace. You can use the following information to find out where mysqld died. If you see no messages after this, something went terribly wrong... stack_bottom = 7f7ba3065e60 thread_stack 0x30000 mysqld(my_print_stacktrace+0x29)[0x7f7ba3609039] mysqld(handle_fatal_signal+0x483)[0x7f7ba34cf9c3] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)[0x7f7ba2220cb0] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35)[0x7f7ba188c425] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b)[0x7f7ba188fb8b] mysqld(+0x65e0fc)[0x7f7ba37160fc] mysqld(+0x602be6)[0x7f7ba36babe6] mysqld(+0x635006)[0x7f7ba36ed006] mysqld(+0x5d7072)[0x7f7ba368f072] mysqld(+0x5d7b9c)[0x7f7ba368fb9c] mysqld(+0x6a3348)[0x7f7ba375b348] mysqld(+0x6a3887)[0x7f7ba375b887] mysqld(+0x5c6a86)[0x7f7ba367ea86] mysqld(+0x5ae3a7)[0x7f7ba36663a7] mysqld(_Z15ha_delete_tableP3THDP10handlertonPKcS4_S4_b+0x16d)[0x7f7ba34d3ffd] mysqld(_Z23mysql_rm_table_no_locksP3THDP10TABLE_LISTbbbb+0x568)[0x7f7ba3417f78] mysqld(_Z11mysql_rm_dbP3THDPcbb+0x8aa)[0x7f7ba339780a] mysqld(_Z21mysql_execute_commandP3THD+0x394c)[0x7f7ba33b886c] mysqld(_Z11mysql_parseP3THDPcjP12Parser_state+0x10f)[0x7f7ba33bb28f] mysqld(_Z16dispatch_command19enum_server_commandP3THDPcj+0x1380)[0x7f7ba33bc6e0] mysqld(_Z24do_handle_one_connectionP3THD+0x1bd)[0x7f7ba346119d] mysqld(handle_one_connection+0x50)[0x7f7ba3461200] /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f7ba2218e9a] /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f7ba1949cbd] Trying to get some variables. Some pointers may be invalid and cause the dump to abort. Query (7f7b7c004b60): is an invalid pointer Connection ID (thread ID): 1 Status: NOT_KILLED The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains information that should help you find out what is causing the crash. --Dean

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  • Xen hipervisor 4.1 Kernel Panic on Ubuntu 12.04

    - by rkmax
    I have a fresh Ubuntu 12.04.1 amd64 server install following this guide I have used LVM option used all disk and make 2 LV /dev/mapper/vg-root / (80GB) vg-swap swap (4GB) now i install xen with apt-get install xen-hypervisor-4.1-amd64 and config /etc/default/grub like the guide and add GRUB_CMDLINE_XEN_DEFAULT="dom0_mem=768M" later all this i exec update-grub and reboot. but when i try to boot with Xen 4.1-amd64 always i get a kernel panic with the message Domain-0 allocation is too small for kernel image my questions are: this error is about what? where i can grow this allocation for avoid this error? grub.cfg menuentry 'Ubuntu GNU/Linux, with Xen 4.1-amd64 and Linux 3.2.0-29-generic' --class ubuntu --class gnu-linux --class gnu --class os --class xen { insmod part_gpt insmod ext2 set root='(hd0,gpt2)' search --no-floppy --fs-uuid --set=root 3541e241-7f39-4ebe-8d99-c5306294c266 echo 'Loading Xen 4.1-amd64 ...' multiboot /xen-4.1-amd64.gz placeholder dom0_mem=768M echo 'Loading Linux 3.2.0-29-generic ...' module /vmlinuz-3.2.0-29-generic placeholder root=/dev/mapper/backup--xen-root ro rootdelay=180 echo 'Loading initial ramdisk ...' module /initrd.img-3.2.0-29-generic } Note: I've followed this guide too

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