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  • Python - from file to data structure?

    - by Seafoid
    Hi, I have large file comprising ~100,000 lines. Each line corresponds to a cluster and each entry within each line is a reference i.d. for another file (protein structure in this case), e.g. 1hgn 1dju 3nmj 8kfn 9opu 7gfb 4bui I need to read in the file as a list of lists where each line is a sublist, thus preserving the integrity of the cluster, e.g. nested_list = [['1hgn', '1dju', '3nmj', '8kfn'], ['9opu', '7gfb'], ['4bui']] My current code creates a nested list but the entries within each list are a single string and not comma separated. Therefore, I cannot splice the list with indices so easily. Any help greatly appreciated. Thanks, S :-)

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  • C# : Redirect console application output : How to flush the output?

    - by user93422
    I am spawning external console application and use async output redirect. as shown in this SO post My problem is it seems that the spawned process needs to produce certain amount of output before I get the OutputDataReceived event notification. I want to receive the OutputDataReceived event as soon as possible. I have a bare-bones redirecting application, and here are some observations: 1. When I call a simple 'while(true) print("X");' console application (C#) I receive output event immediately. 2. When I call a 3d party app I am trying to wrap from the command line I see the line-by-line output. 3. When I call that 3d party app from my bare-bone wrapper (see 1) - the output comes in chunks (about one page size). What happens inside that app? FYI: The app in question is a "USBee DX Data Exctarctor (Async bus) v1.0".

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  • Delete the last instance of a certain string from a text file without changing the other instances o

    - by fraXis
    Hello, I have a C# program where I am using a lot of RegEx.Replace to replace text in my text file. Here is my problem. In my text file, I have a code such as "M6T1". This code is listed in numerous places in the text file. However, I only want to delete it from the bottom (last instance) in the text file. There will always be a "M6T1" at the bottom of the text file, but it is not always the last line. It could be the 3rd line from the bottom, the 5th line from the bottom etc. I only want to get rid of the last instance of "M6T1" so RegEx.Replace won't work here. I don't want to interfer with the other "M6T1"'s in the other locations in the text file. Can someone please give me a solution to this problem? Thanks

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  • make script output link to code in Visual Studio

    - by JoelFan
    I sometimes need to search code for patterns in a way that goes beyond the regex capabilities of Visual Studio (e.g. patterns that depend on what was seen previously in the file or on the contents of other files). So I use Perl to analyze the source and output matching lines, along with the file name and line number. Since this is the exact same format as is produced by the search feature of Visual Studio, I wonder if there is a way to duplicate the functionality where I can double-click on a line and it will display that line in context in Visual Studio. Any ideas?

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  • Ruby on Rails controller and architecture with cells

    - by dt
    I decided to try to use the cells plugin from rails: http://cells.rubyforge.org/community.html given that I'm new to Ruby and very used to thinking in terms of components. Since I'm developing the app piecemeal and then putting it together piece by piece, it makes sense to think in terms of components. So, I've been able to get cells working properly inside a single view, which calls a partial. Now, what I would like to be able to do (however, maybe my instincts need to be redirected to be more "Rails-y"), is call a single cell controller and use the parameters to render one output vs. another. Basically, if there were a controller like: def index params[:responsetype] end def processListResponse end def processSearchResponse end And I have two different controller methods that I want to respond to based on the params response type, where I have a single template on the front end and want the inner "component" to render differently depending on what type of request is made. That allows me to reuse the same front-end code. I suppose I could do this with an ajax call instead and just have it rerender the component on the front end, but it would be nice to have the option to do it either way and to understand how to architect Rails a bit better in the process. It seems like there should be a "render" option from within the cells framework to render to a certain controller or view, but it's not working like I expect and I don't know if I'm even in the ballpark. Thanks!

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  • improve my python program to fetch the desire rows by using if condition

    - by user2560507
    unique.txt file contains: 2 columns with columns separated by tab. total.txt file contains: 3 columns each column separated by tab. I take each row from unique.txt file and find that in total.txt file. If present then extract entire row from total.txt and save it in new output file. ###Total.txt column a column b column c interaction1 mitochondria_205000_225000 mitochondria_195000_215000 interaction2 mitochondria_345000_365000 mitochondria_335000_355000 interaction3 mitochondria_345000_365000 mitochondria_5000_25000 interaction4 chloroplast_115000_128207 chloroplast_35000_55000 interaction5 chloroplast_115000_128207 chloroplast_15000_35000 interaction15 2_10515000_10535000 2_10505000_10525000 ###Unique.txt column a column b mitochondria_205000_225000 mitochondria_195000_215000 mitochondria_345000_365000 mitochondria_335000_355000 mitochondria_345000_365000 mitochondria_5000_25000 chloroplast_115000_128207 chloroplast_35000_55000 chloroplast_115000_128207 chloroplast_15000_35000 mitochondria_185000_205000 mitochondria_25000_45000 2_16595000_16615000 2_16585000_16605000 4_2785000_2805000 4_2775000_2795000 4_11395000_11415000 4_11385000_11405000 4_2875000_2895000 4_2865000_2885000 4_13745000_13765000 4_13735000_13755000 My program: file=open('total.txt') file2 = open('unique.txt') all_content=file.readlines() all_content2=file2.readlines() store_id_lines = [] ff = open('match.dat', 'w') for i in range(len(all_content)): line=all_content[i].split('\t') seq=line[1]+'\t'+line[2] for j in range(len(all_content2)): if all_content2[j]==seq: ff.write(seq) break Problem: but istide of giving desire output (values of those 1st column that fulfile the if condition). i nead somthing like if jth of unique.txt == ith of total.txt then write ith row of total.txt into new file.

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  • Retrieve text from external HTML/asp page with JavaScript

    - by Rotem
    Hi, I am using an external asp page (On the company's server - not related to me beside the fact that I'm using it for my job). The asp page has one query in it, I'm writing something in it and it gives me some information. In the information there is a certain line with constant header (let's assume 'HEADER'), I want to build an HTA that pulls the line that contains 'HEADER' to my HTA and display only this line. I think that this isn't possible without any server interaction, but I'm asking anyway. Can someone think of a way doing it? Thanks, Rotem

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  • Parsing HTML "Visually"

    - by Midhat
    OKay I am at loss how to name this question. I have some HTML files, probably written by lord Lucifier himself, that I need to parse. It consists of many segments like this, among other html tags <p>HeadingNumber</p> <p style="text-indent:number;margin-top:neg_num ">Heading Text</p> <p>Body</p> Notice that the heading number and text are in seperate p tags, aligned in a horizontal line by css. the css may be whatever Lucifier fancies, a mixture of indents, paddings, margins and positions. However that line is a single object in my business model and should be kept as such. So How do I detect whether two p elements are visually in a single line and process them accordingly. I believe the HTML files are well formed if it helps.

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  • ASP.NET in VS IDE gives "Expression cannot be evaluated at this time."

    - by S Nash
    I read all of similar questions in SO but none seem to be an answer. Situation is simple. I have a ASP.NET webpage, In a VB code behind file I have the following line: iRendProvider = ddlProvider.SelectedItem.Value where iRendProvider is integer and ddlProvider is a dropdownlist. I put a breakpoint at the above line and code stops there. Now in the immdediate window in I type: ? ddlProvider.SelectedItem.Value I get "Expression cannot be evaluated at this time." If I step over iRendProvider = ddlProvider.SelectedItem.Value To the next line and I type ? iRendProvider , I see the correct value in the immediate window. Question is why this error and how to see contents of ddlProvider.

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  • CSV parser in C++

    - by User1
    All I need is a good CSV file parser for C++. At this point it can really just be a comma-delimited parser (ie don't worry about escaping new lines and commas). The main need is a line-by-line parser that will return a vector for the next line each time the method is called. I found this article which looks quite promising: http://www.boost.org/doc/libs/1_35_0/libs/spirit/example/fundamental/list_parser.cpp I've never used Boost's Spirit, but am willing to try it. Is it overkill/bloated or is it fast and efficient? Does anyone have faster algorithms using STL or anything else? Thanks!

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  • Read a file with 2048 bytes

    - by Suresh S
    Guys i have a file which has only one line. The file has no encoding it is a simple text file with single line. For every 2048 byte in a line , there is new record of 151 byte (totally 13*151 byte = 1945 records + 85 byte empty space). similarly for the next 2048 bytes. What is the best file i/o to use? i am thinking of reading 2048 bytes from file and storing it in an array . while (offset < fileLength &&(numRead=in.read(recordChunks, offset,alength)) >= 0) { } how can i get from the read statement only 2048 bytes at a time . i am getting IndexOutofBoundException.

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  • Deactivate any calls to Log before publishing: are there tools to do this?

    - by Nicolas Raoul
    According to Google, I must "Deactivate any calls to Log methods in the source code" before publishing my Android app (section 4 of the publication checklist). My open-source project is large and it is a pain to do it manually every time I release. Additionally, removing a Log line is potentially tricky, for instance: if(condition) Log.d(LOG_TAG, "Something"); data.load(); data.show(); If I comment the Log line, then the condition applies to the next line, and chances are load() is not called. Are such situations rare enough that I can decide it should exist? This is on the official checklist, so I guess many people do this on a regular basis. So, is there a tool that removes all Log lines? Preferably one that is not tricked by code like the above.

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  • nightmare with relative imports, how does pep 366 work?

    - by pygabriel
    I have a "canonical file structure" like that (I'm giving sensible names to ease the reading): mainpack/ __main__.py __init__.py - helpers/ __init__.py path.py - network/ __init__.py clientlib.py server.py - gui/ __init__.py mainwindow.py controllers.py In this structure, for example modules contained in each package may want to access the helpers utilities through relative imports in something like: # network/clientlib.py from ..helpers.path import create_dir The program is runned "as a script" using the __main__.py file in this way: python mainpack/ Trying to follow the PEP 366 I've put in __main__.py these lines: ___package___ = "mainpack" from .network.clientlib import helloclient But when running: $ python mainpack Traceback (most recent call last): File "/usr/lib/python2.6/runpy.py", line 122, in _run_module_as_main "__main__", fname, loader, pkg_name) File "/usr/lib/python2.6/runpy.py", line 34, in _run_code exec code in run_globals File "path/mainpack/__main__.py", line 2, in <module> from .network.clientlib import helloclient SystemError: Parent module 'mainpack' not loaded, cannot perform relative import What's wrong? What is the correct way to handle and effectively use relative imports? I've tried also to add the current directory to the PYTHONPATH, nothing changes.

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  • Java URL Connection Time Out

    - by webren
    Hello, I am attempting to connect to a website where I'd like to extract its HTML contents. My application will never connect to the site - only time out. Here is my code: URL url = new URL("www.website.com"); URLConnection connection = url.openConnection(); connection.setConnectTimeout(2000); connection.setReadTimeOut(2000); BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream()); String line; while ((line = reader.readLine()) != null) { // do stuff with line } reader.close(); Any ideas would be greatly appreciated. Thanks!

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  • Rails routing issue

    - by Brob
    Hi I've just started learning rails and been going through some tutorials from learning rails (http://www.buildingwebapps.com/podcasts/79335-putting-the-page-contents-into-the) The tutorials appear to be Rails v2 and I'm on Rails v3 There is a line in the routes file which appears to be causing a problem map.view_page ':name', :controller => 'viewer', :action => 'show' The line works for the front end view i.e. my viewer controller but not for the back end I get the error NoMethodError in Viewer#show I think this has something to do with the view I am using and the line <%= @page.body %> I know it's difficult without the full code but if anyone can help that would be awesome

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  • Inserting a newline into a pre tag (IE, Javascript)

    - by Itay
    In IE when I insert text into a <pre> tag the newlines are ignored: <pre id="putItHere"></pre> <script> function putText() { document.getElementById("putItHere").innerHTML = "first line\nsecond line"; } </script> Using \r\n instead of a plain \n does not work. <br/> does work but inserts an extra blank line in FF, which is not acceptable for my purposes.

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  • "Socket operation on non-socket" error due to strange sytax

    - by Robert S. Barnes
    I ran across the error Socket operation on non-socket in some of my networking code when calling connect and spent a lot of time trying to figure out what was causing it. I finally figured out that the following line of code was causing the problem: if ((sockfd = socket( ai->ai_family, ai->ai_socktype, ai->ai_protocol) < 0)) { See the problem? Here's what the line should look like: if ((sockfd = socket( ai->ai_family, ai->ai_socktype, ai->ai_protocol)) < 0) { What I don't understand is why the first, incorrect line doesn't produce a warning. To put it another way, shouldn't the general form: if ( foo = bar() < baz ) do_somthing(); look odd to the compiler, especially running with g++ -Wall -Wextra? If not, shouldn't it at least show up as "bad style" to cppcheck, which I'm also running as part of my compile?

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  • How can I (from a script) add something to the zsh command history?

    - by Brandon
    I'd like to be able to look through my command history and know the context from which I issued various commands--in other words, "what directory was I in?" There are various ways I could achieve this, but all of them (that I can think of) would require manipulating the zsh history to add (for instance) a commented line with the result of $(pwd). (I could create functions named cd & pushd & popd etc, or I could use zsh's preexec() function and maybe its periodic() function to add the comment line at most every X seconds, just before I issue a command, or perhaps there's some other way.) The problem is, I don't want to directly manipulate the history file and bypass the shell's history mechanism, but I can't figure out a way (with the fc command, for instance) to add something to the history without actually typing it on the command line. How could I do this?

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  • text between lines in css

    - by Tom91136
    in CSS, how can i do something like: ---Item--- with the dash connected like a line? i thought of : border-bottom: 3px solid #000; but then i can't move the line upward plus the line would be behind the text, not surrounding the text my HTML <ul> <li class="sub-menu-item" ><a href="#">FACULTY&STAFF</a></li> </ul> (if possible, i would like to avoid touching the HTML) is all the above possible via css or should i just use an image after all?

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  • Assign multiple css classes to a table element in Rails

    - by Eric K
    I'm trying to style a table row using both cycle and a helper, like shown: <tr class= <%= cycle("list-line-odd #{row_class(item)}", "list-line-even #{row_class(item)}")%> > However, when I do this, the resulting HTML is: <tr class = "list-line-odd" lowest-price> with the return from the helper method not enclosed in the quotes, and therefore not recognized. Here's the helper I'm using: def row_class(item) if item.highest_price > 0 and item.lowest_price > 0 and item.highest_price != item.lowest_price if item.current_price >= item.highest_price "highest-price" elsif item.current_price <= item.lowest_price "lowest-price" end end end I must be missing something obvious, but I just can't figure out how to wrap both the result of cycle and the helper method return in the same set of quotes. Any help would be greatly appreciated!

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  • Why are my \n not working in PHP?

    - by Doug
    I'm playing with SAX and noticed it's not line breaking properly. I have no iea why. function flush_data() { global $level, $char_data; $char_data = trim($char_data); if( strlen( $char_data ) > 0 ) { print "\n"; $data = split("\n", wordwrap($char_data, 76 - ($level*2))); foreach($data as $line) { print str_repeat(' ', ($level +1)) . "[".$line."]"."\n"; } } $char_data = ''; }

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  • error calling c# com interop dll

    - by aF
    Hello, I have a python project that calls a c++ dll that calls a c# dll. I wanted all to run without installing visual studio 2008. I allready made the c++ part by installing Visual C++ 2008 SP1 Redistributable Package (x86) and I also installed .net framework 3.5. But now, when I call a function from c++ dll (and this one calls its correspondent in c#), it gives me this error: Traceback (most recent call last): File "C:\Users\Public\SoundLog\Code\Código Python\SoundLog\SoundLog.py", line 821, in OnStart Auxiliar.DataCollection.start(self) File "C:\Users\Public\SoundLog\Code\Código Python\SoundLog\Auxiliar\DataCollection.py", line 68, in start SoundLogDLL.run() File "C:\Users\Public\SoundLog\Code\Código Python\SoundLog\Auxiliar\SoundLogDLL.py", line 61, in run return apiRun() WindowsError: exception code 0xe0434f4d This works where I've installed full VS2008 pro version. What am I missing and what can I do to solve this?

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  • How do I get my text to be direction from right to left without using a p tag?

    - by smfoote
    I have a dynamically appearing div on a page. I would like to be able to hide the div with a button at the top right corner of the div. One way I have found to do this is to use a p tag, like so: <p dir="RTL">button</p> If this is the first line of HTML within the div, it will put the button in the upper right hand corner of the div. However, it gives me a new line above and a new line below, so, the button isn't really where I want it to be. The "dir" attribute doesn't seem to work with a span tag, and if I display the p tag inline using css p { display:inline; } the button is no longer right aligned. Instead it stays in the left hand corner. Is there a way to get this button in the upper right hand corner without two unnecessary new lines and without a bunch of  ?

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  • Strange result of highchart

    - by user1612334
    I use http://highcharts.com and there is really strange result. So, my data looks like: Value | Date 1507 2013-02-03 734 2013-02-02 0 2013-02-01 225 2013-01-31 *Graphic miss* 672 2013-01-30 *Graphic miss* 692 2013-01-29 *Graphic miss* <--- This value gone to 1 february 910 2013-01-28 314 2013-01-27 I miss three days (29 January, 30, 31). When i get data from database, i convert it so: var lines = []; try { jQuery.each(data, function(i, line) { var dateArr = line.date.split('-'); lines.push([ Date.UTC(dateArr[0],dateArr[1],dateArr[2]), parseInt(line.num_chips) ]); }); } catch(e) { } Why could it be so? =\

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