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  • use doctest and logging in python program

    - by Luke
    #!/usr/bin/python2.4 import logging import sys import doctest def foo(x): """ foo (0) 0 """ print ("%d" %(x)) _logger.debug("%d" %(x)) def _test(): doctest.testmod() _logger = logging.getLogger() _logger.setLevel(logging.DEBUG) _formatter = logging.Formatter('%(message)s') _handler = logging.StreamHandler(sys.stdout) _handler.setFormatter(_formatter) _logger.addHandler(_handler) _test() I would like to use logger module for all of my print statements. I have looked at the first 50 top google links for this, and they seem to agree that doctest uses it's own copy of the stdout. If print is used it works if logger is used it logs to the root console. Can someone please demonstrate a working example with a code snippet that will allow me to combine. Note running nose to test doctest will just append the log output at the end of the test, (assuming you set the switches) it does not treat them as a print statement.

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  • Unbuffered subprocess output (last line missing)

    - by plok
    I must be overlooking something terribly obvious. I need to execute a C program, display its output in real time and finally parse its last line, which should be straightforward as the last line printed is always the same. process = subprocess.Popen(args, shell = True, stdout = subprocess.PIPE, stderr = subprocess.PIPE) # None indicates that the process hasn't terminated yet. while process.poll() is None: # Always save the last non-emtpy line that was output by the child # process, as it will write an empty line when closing its stdout. out = process.stdout.readline() if out: last_non_empty_line = out if verbose: sys.stdout.write(out) sys.stdout.flush() # Parse 'out' here... Once in a while, however, the last line is not printed. The default value for Popens's bufsize is 0, so it is supposed to be unbuffered. I have also tried, to no avail, adding fflush(stdout) to the C code just before exiting, but it seems that there is absolutely no need to flush a stream before exiting a program. Ideas anyone?

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  • How do I introspect things in Ruby?

    - by Jason Baker
    For instance, in Python, I can do things like this if I want to get all attributes on an object: >>> import sys >>> dir(sys) ['__displayhook__', '__doc__', '__excepthook__', '__name__', '__package__', '__stderr__', '__stdin__', '__stdout__', '_clear_type_cache', '_current_frames', '_getframe', 'api_version', 'argv', 'builtin_module_names', 'byteorder', 'call_tracing', 'callstats', 'copyright', 'displayhook', 'dont_write_bytecode', 'exc_clear', 'exc_info', 'exc_type', 'excepthook', 'exec_prefix', 'executable', 'exit', 'flags', 'float_info', 'getcheckinterval', 'getdefaultencoding', 'getdlopenflags', 'getfilesystemencoding', 'getprofile', 'getrecursionlimit', 'getrefcount', 'getsizeof', 'gettrace', 'hexversion', 'maxint', 'maxsize', 'maxunicode', 'meta_path', 'modules', 'path', 'path_hooks', 'path_importer_cache', 'platform', 'prefix', 'ps1', 'ps2', 'py3kwarning', 'pydebug', 'setcheckinterval', 'setdlopenflags', 'setprofile', 'setrecursionlimit', 'settrace', 'stderr', 'stdin', 'stdout', 'subversion', 'version', 'version_info', 'warnoptions'] Or if I want to view the documentation of something, I can use the help function: >>> help(str) Is there any way to do similar things in Ruby?

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  • Cython Speed Boost vs. Usability

    - by zubin71
    I just came across Cython, while I was looking out for ways to optimize Python code. I read various posts on stackoverflow, the python wiki and read the article "General Rules for Optimization". Cython is something which grasps my interest the most; instead of writing C-code for yourself, you can choose to have other datatypes in your python code itself. Here is a silly test i tried, #!/usr/bin/python # test.pyx def test(value): for i in xrange(value): i**2 if(i==1000000): print i test(10000001) $ time python test.pyx real 0m16.774s user 0m16.745s sys 0m0.024s $ time cython test.pyx real 0m0.513s user 0m0.196s sys 0m0.052s Now, honestly, i`m dumbfounded. The code which I have used here is pure python code, and all I have changed is the interpreter. In this case, if cython is this good, then why do people still use the traditional Python interpretor? Are there any reliability issues for Cython?

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  • Load client-side accordion with pane open

    - by superexsl
    hey , I'm trying to change an AJAX accordion layout on the client-side. How can I make it so that when the page loads, the selected pane is opened? At the moment, I have this: Sys.require(Sys.components.accordion, function() { $("#accordion").accordion({ HeaderCssClass: "acc_header", HeaderSelectedCssClass: "acc_selectedheader", FadeTransitions: true, requireOpenedPane: false }); }); This works. However, if I add SelectedIndex = 1, it still starts off with the top pane opened and everything else closed. I tried change the 1 to other numbers (including -1), but it doesn't make a difference. Have I missed something here? (It's placed in an updatepanel, if that makes a difference) Thanks

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  • Python file-io code listing current folder path instead of the specified

    - by Tom Brito
    I have the code: import os import sys fileList = os.listdir(sys.argv[1]) for file in fileList: if os.path.isfile(file): print "File >> " + os.path.abspath(file) else: print "Dir >> " + os.path.abspath(file) Located in my music folder ("/home/tom/Music") When I call it with: python test.py "/tmp" I expected it to list my "/tmp" files and folders with the full path. But it printed lines like: Dir >> /home/tom/Music/seahorse-gw2jNn Dir >> /home/tom/Music/FlashXX9kV847 Dir >> /home/tom/Music/pulse-DcIEoxW5h2gz This is, the correct file names, but the wrong path (and this files are not either in my Music folder).. What's wrong with this code?

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  • How to log python exception ?

    - by Maxim Veksler
    Hi, Coming from java, being familiar with logback I used to do try { ... catch (Exception e) { log("Error at X", e); } I would like the same functionality of being able to log the exception and the stacktrace into a file. How would you recommend me implementing this? Currently using boto logging infrastructre, boto.log.info(...) I've looked at some options and found out I can access the actual exception details using this code: import sys try: 1/0 except: exc_type, exc_value, exc_traceback = sys.exc_info() traceback.print_exception(exc_type, exc_value, exc_traceback) I would like to somehow get the string print_exception() throws to stdout so that I can log it. Thank you, Maxim.

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  • PyOpenGL - passing transformation matrix into shader

    - by M-V
    I am having trouble passing projection and modelview matrices into the GLSL shader from my PyOpenGL code. My understanding is that OpenGL matrices are column major, but when I pass in projection and modelview matrices as shown, I don't see anything. I tried the transpose of the matrices, and it worked for the modelview matrix, but the projection matrix doesn't work either way. Here is the code: import OpenGL from OpenGL.GL import * from OpenGL.GL.shaders import * from OpenGL.GLU import * from OpenGL.GLUT import * from OpenGL.GLUT.freeglut import * from OpenGL.arrays import vbo import numpy, math, sys strVS = """ attribute vec3 aVert; uniform mat4 uMVMatrix; uniform mat4 uPMatrix; uniform vec4 uColor; varying vec4 vCol; void main() { // option #1 - fails gl_Position = uPMatrix * uMVMatrix * vec4(aVert, 1.0); // option #2 - works gl_Position = vec4(aVert, 1.0); // set color vCol = vec4(uColor.rgb, 1.0); } """ strFS = """ varying vec4 vCol; void main() { // use vertex color gl_FragColor = vCol; } """ # particle system class class Scene: # initialization def __init__(self): # create shader self.program = compileProgram(compileShader(strVS, GL_VERTEX_SHADER), compileShader(strFS, GL_FRAGMENT_SHADER)) glUseProgram(self.program) self.pMatrixUniform = glGetUniformLocation(self.program, 'uPMatrix') self.mvMatrixUniform = glGetUniformLocation(self.program, "uMVMatrix") self.colorU = glGetUniformLocation(self.program, "uColor") # attributes self.vertIndex = glGetAttribLocation(self.program, "aVert") # color self.col0 = [1.0, 1.0, 0.0, 1.0] # define quad vertices s = 0.2 quadV = [ -s, s, 0.0, -s, -s, 0.0, s, s, 0.0, s, s, 0.0, -s, -s, 0.0, s, -s, 0.0 ] # vertices self.vertexBuffer = glGenBuffers(1) glBindBuffer(GL_ARRAY_BUFFER, self.vertexBuffer) vertexData = numpy.array(quadV, numpy.float32) glBufferData(GL_ARRAY_BUFFER, 4*len(vertexData), vertexData, GL_STATIC_DRAW) # render def render(self, pMatrix, mvMatrix): # use shader glUseProgram(self.program) # set proj matrix glUniformMatrix4fv(self.pMatrixUniform, 1, GL_FALSE, pMatrix) # set modelview matrix glUniformMatrix4fv(self.mvMatrixUniform, 1, GL_FALSE, mvMatrix) # set color glUniform4fv(self.colorU, 1, self.col0) #enable arrays glEnableVertexAttribArray(self.vertIndex) # set buffers glBindBuffer(GL_ARRAY_BUFFER, self.vertexBuffer) glVertexAttribPointer(self.vertIndex, 3, GL_FLOAT, GL_FALSE, 0, None) # draw glDrawArrays(GL_TRIANGLES, 0, 6) # disable arrays glDisableVertexAttribArray(self.vertIndex) class Renderer: def __init__(self): pass def reshape(self, width, height): self.width = width self.height = height self.aspect = width/float(height) glViewport(0, 0, self.width, self.height) glEnable(GL_DEPTH_TEST) glDisable(GL_CULL_FACE) glClearColor(0.8, 0.8, 0.8,1.0) glutPostRedisplay() def keyPressed(self, *args): sys.exit() def draw(self): glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT) # build projection matrix fov = math.radians(45.0) f = 1.0/math.tan(fov/2.0) zN, zF = (0.1, 100.0) a = self.aspect pMatrix = numpy.array([f/a, 0.0, 0.0, 0.0, 0.0, f, 0.0, 0.0, 0.0, 0.0, (zF+zN)/(zN-zF), -1.0, 0.0, 0.0, 2.0*zF*zN/(zN-zF), 0.0], numpy.float32) # modelview matrix mvMatrix = numpy.array([1.0, 0.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.5, 0.0, -5.0, 1.0], numpy.float32) # render self.scene.render(pMatrix, mvMatrix) # swap buffers glutSwapBuffers() def run(self): glutInitDisplayMode(GLUT_RGBA) glutInitWindowSize(400, 400) self.window = glutCreateWindow("Minimal") glutReshapeFunc(self.reshape) glutDisplayFunc(self.draw) glutKeyboardFunc(self.keyPressed) # Checks for key strokes self.scene = Scene() glutMainLoop() glutInit(sys.argv) prog = Renderer() prog.run() When I use option #2 in the shader without either matrix, I get the following output: What am I doing wrong?

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  • Printing elements out of list

    - by chavanak
    Hi, I have a certain check to be done and if the check satisfies, I want the result to be printed. Below is the code: import string import codecs import sys y=sys.argv[1] list_1=[] f=1.0 x=0.05 write_in = open ("new_file.txt", "w") write_in_1 = open ("new_file_1.txt", "w") ligand_file=open( y, "r" ) #Open the receptor.txt file ligand_lines=ligand_file.readlines() # Read all the lines into the array ligand_lines=map( string.strip, ligand_lines ) #Remove the newline character from all the pdb file names ligand_file.close() ligand_file=open( "unique_count_c_from_ac.txt", "r" ) #Open the receptor.txt file ligand_lines_1=ligand_file.readlines() # Read all the lines into the array ligand_lines_1=map( string.strip, ligand_lines_1 ) #Remove the newline character from all the pdb file names ligand_file.close() s=[] for i in ligand_lines: for j in ligand_lines_1: j = j.split() if i == j[1]: print j The above code works great but when I print j, it prints like ['351', '342'] but I am expecting to get 351 342 (with one space in between). Since it is more of a python question, I have not included the input files (basically they are just numbers). Can anyone help me? Cheers, Chavanak

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  • Django and mod_python config

    - by Peter
    My Django project is placed in /www/host1/htdocs/my/project, www and my are links to other actual folders. Apache has mod_python enabled. I have a .htaccess in project folder: SetHandler python-program PythonHandler django.core.handlers.modpython SetEnv DJANGO_SETTINGS_MODULE project.settings PythonDebug On PythonOption django.root /my/project PythonPath "['/www/host1/htdocs/my/project'] + sys.path" I suppose my site should be accessible from http://host1/my/project, but I see the following error: ImportError: Could not import settings 'project.settings' (Is it on sys.path? Does it have syntax errors?): No module named project.settings Can somebody give any suggestions?

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  • Unable to create index because of duplicate that doesn't exist?

    - by Alex Angas
    I'm getting an error running the following Transact-SQL command: CREATE UNIQUE NONCLUSTERED INDEX IX_TopicShortName ON DimMeasureTopic(TopicShortName) The error is: Msg 1505, Level 16, State 1, Line 1 The CREATE UNIQUE INDEX statement terminated because a duplicate key was found for the object name 'dbo.DimMeasureTopic' and the index name 'IX_TopicShortName'. The duplicate key value is (). When I run SELECT * FROM sys.indexes WHERE name = 'IX_TopicShortName' or SELECT * FROM sys.indexes WHERE object_id = OBJECT_ID(N'[dbo].[DimMeasureTopic]') the IX_TopicShortName index does not display. So there doesn't appear to be a duplicate. I have the same schema in another database and can create the index without issues there. Any ideas why it won't create here?

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  • Retrieving a filtered list of stored procedures using t-sql

    - by DanDan
    I'm trying to get a list of stored procedures in t-sql. I am using the line: exec sys.sp_stored_procedures; I would like to filter the results back though, so I only get user created stored procedures. I would like to filter out sp_*, dt_*, fn_*, xp_* and everything else that is a system stored procedure and no interest to me. How can I manipulate the result set returned? Using Sql Server 2008 express. Solved! Here is what I used: SELECT name FROM sys.procedures WHERE [type] = 'P' AND name NOT LIKE 'sp_%' AND name NOT LIKE 'dt_%' ORDER BY name ASC;

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  • C++ porting templates to Red hat enterprise linux version 5

    - by mkal
    #include <sys/stat.h> #include <sys/types.h> #include <unistd.h> template <class OutType> bool getVAL(OutType &value_out, const std::string &key) { return false; } int main (int argc, char*argv[]) { mode_t a; getVAL(a, "abc"); } test.cpp:6: error: ISO C++ forbids declaration of ‘parameter’ with no type test.cpp: In function ‘int main(int, char**)’: test.cpp:13: error: no matching function for call to ‘getVAL(mode_t&, const char [4])’

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  • Rationale behind Python's preferred for syntax

    - by susmits
    What is the rationale behind the advocated use of the for i in xrange(...)-style looping constructs in Python? For simple integer looping, the difference in overheads is substantial. I conducted a simple test using two pieces of code: File idiomatic.py: #!/usr/bin/env python M = 10000 N = 10000 if __name__ == "__main__": x, y = 0, 0 for x in xrange(N): for y in xrange(M): pass File cstyle.py: #!/usr/bin/env python M = 10000 N = 10000 if __name__ == "__main__": x, y = 0, 0 while x < N: while y < M: y += 1 x += 1 Profiling results were as follows: bash-3.1$ time python cstyle.py real 0m0.109s user 0m0.015s sys 0m0.000s bash-3.1$ time python idiomatic.py real 0m4.492s user 0m0.000s sys 0m0.031s I can understand why the Pythonic version is slower -- I imagine it has a lot to do with calling xrange N times, perhaps this could be eliminated if there was a way to rewind a generator. However, with this deal of difference in execution time, why would one prefer to use the Pythonic version?

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  • How to run unittest under pydev for Django?

    - by photon
    I configured properties for my django project under pydev. I can run the django app under pydev or under console window. I can also run unittest for app under console window. But I have problems to run unittest under pydev. I guess it's something related to run configurations of pydev, so I made several trials, but with no success. Once I got messages like this: ImportError: Could not import settings 'D:\django_projects\MyProject' (Is it on sys.path? Does it have syntax errors?): No module named D:\django_projects\MyProject ERROR: Module: MyUnittestFile could not be imported. Another time I got messages like this: ImportError: Could not import settings 'MyProject.settngs' (Is it on sys.path? Does it have syntax errors?): No module named settngs 'ERROR: Module: MyUnittestFile could not be imported. I use pydev 1.5.6 on eclipse and windows xp. Any ideas for this problem?

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  • Nant task sysinfo verbose - fails

    - by Broken Link
    Nant.core.dll : 0.86.2898.0 I can not get the following tag working on my machine. <sysinfo verbose="true" /> <sysinfo /> It gives me the following error. If I comment out those two lines I'm able to build. I google'd but not much help. Any idea? NAnt 0.85 (Build 0.85.1932.0; rc3; 4/16/2005) Copyright (C) 2001-2005 Gerry Shaw http://nant.sourceforge.net Buildfile: file:///C:/xyz/source/Default.build Target framework: Microsoft .NET Framework 1.1 Target(s) specified: all [tstamp] Thursday, July 30, 2009 3:10:24 PM. [sysinfo] Setting system information properties under sys.* BUILD FAILED Property name 'sys.env.Zen Managed Workstation' is invalid. Total time: 0 seconds.

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  • stumped by WSGI module import errors

    - by rguha
    Hi, I'm writing a bare bones Python wsgi application and am getting stumped by module import errors. I have a .py file in the current directory which initially failed to import. By adding sys.path.insert(0, '/Users/guhar/Sites/acom') the import of the module worked. But I now try and import a module that I had installed via easy_install and it fails to import. I tried setting sys.path.insert(0, '/Library/Python/2.5/site-packages/') which contains the egg file, but to no avail. I would've thought that all packages under "/Library/Python/2.5/site-packages/" would be available to a WSGI application. Does anybody have any pointers?

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  • How to reference a sql server with a slash (\) in its name?

    - by Bill Paetzke
    Givens: One SQL Server is named: DevServerA Another is named: DevServerB\2K5 Problem: From DevServerA, how can I write a query that references DevServerB\2K5? I tried a sample, dummy query (running it from DevServerA): SELECT TOP 1 * FROM DevServerB\2K5.master.sys.tables And I get the error: Msg 102, Level 15, State 1, Line 2 Incorrect syntax near '\.'. However, I know my syntax is almost correct, since the other way around works (running this query from DevServerB\2K5): SELECT TOP 1 * FROM DevServerA.master.sys.tables Please help me figure out how to reference DevServerB\2K5 from DevServerA. Thanks.

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  • Subprocess fails to catch the standard output

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Fabfiles With Command Line Arguments

    - by phasetwenty
    Is there a clean way to have your fabfile take command line arguments? I'm writing an installation script for a tool that I want to be able to specify an optional target directory via the command line. I wrote some code to test what would happen if I passed in some command line arguments: # fabfile.py import sys def install(): _get_options() def _get_options(): print repr(sys.argv[1:]) A couple of runs: $ fab install ['install'] Done. $ fab install --electric-boogaloo Usage: fab [options] <command>[:arg1,arg2=val2,host=foo,hosts='h1;h2',...] ... fab: error: no such option: --electric-boogaloo

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  • Add client-side events to ASP.Net custom control at runtime

    - by nw
    I'm building an ASP.net custom control that implements IScriptControl. I would like other users of my control to be able to assign client-side event handlers to the control. Unfortunately the JS generated by IScriptControl is always injected at the very bottom of the rendered page (see below), so any attempt to assign an event handler in the ASPX page fails because the code executes too early. ... <script type="text/javascript"> //<![CDATA[ Sys.Application.initialize(); Sys.Application.add_init(function() { $create(MyNamespace.MyControl, {}, null, null, $get("my_control_id")); }); //]]> </script> </form> What's the right way to assign an event handler to the instantiated control upon page load?

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  • Python subprocess.Popen

    - by Albert
    I have that code: #!/usr/bin/python -u localport = 9876 import sys, re, os from subprocess import * tun = Popen(["./newtunnel", "22", str(localport)], stdout=PIPE, stderr=STDOUT) print "** Started tunnel, waiting to be ready ..." for l in tun.stdout: sys.stdout.write(l) if re.search("Waiting for connection", l): print "** Ready for SSH !" break The "./newtunnel" will not exit, it will constantly output more and more data to stdout. However, that code will not give any output and just keeps waiting in the tun.stdout. When I kill the newtunnel process externally, it flushes all the data to tun.stdout. So it seems that I can't get any data from the tun.stdout while it is still running. Why is that? How can I get the information? Note that the default bufsize for Popen is 0 (unbuffered). I can also specify bufsize=0 but that doesn't change anything.

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  • ImportError and Django driving me crazy

    - by John Peebles
    OK, I have the following directory structure (it's a django project): - project -- app and within the app folder, there is a scraper.py file which needs to reference a class defined within models.py I'm trying to do the following: import urllib2 import os import sys import time import datetime import re import BeautifulSoup sys.path.append('/home/userspace/Development/') os.environ['DJANGO_SETTINGS_MODULE'] = 'project.settings' from project.app.models import ClassName and this code just isn't working. I get an error of: Traceback (most recent call last): File "scraper.py", line 14, in from project.app.models import ClassName ImportError: No module named project.app.models This code above used to work, but broke somewhere along the line and I'm extremely confused as to why I'm having problems. On SnowLeopard using python2.5.

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  • Linux Kernel - Slab Allocator Question

    - by Drex
    I am playing around with the kernel and am looking at the kmem_cache files_cachep belonging to fork.c. It detects the sizeof(files_struct). My question is this: I have altered files_struct and added a rb_root (red/black tree root) using the built-in functionality in linux/rbtree.h. I can properly insert values into this tree. However, at some point, a segfault occurs and GDB backtraces the following information: (gdb) backtrace 0 0x08066ad7 in page_ok (page=) at arch/um/os-Linux/sys-i386/task_size.c:31 1 0x08066bdf in os_get_top_address () at arch/um/os-Linux/sys-i386/task_size.c:100 2 0x0804a216 in linux_main (argc=1, argv=0xbfb05f14) at arch/um/kernel/um_arch.c:277 3 0x0804acdc in main (argc=1, argv=0xbfb05f14, envp=0xbfb05f1c) at arch/um/os-Linux/main.c:150 I have spent many hours trying to figure out why there is a segfault given that the red/black tree inserts properly. I'm thinking it's a memory allocation issue with new processes made by fork() of a parent process. Could this be the case and could it have something to do with kmem_cache files_cachep?

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