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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Good looking programs that are built using wxPython for their UI

    - by ChrisC
    I need inspiration and motivation so I'm trying to find examples of different programs that have interesting and attractive UI's created free using wxPython. My searches have been slow to find results. I'm hoping you guys know of some of the best ones out there. btw, I've seen these: http://www.wxpython.org/screenshots.php and the list under "Applications Developed with wxPython" on the wxPython Wikipedia page. Update: only need Windows examples

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  • How to handle requsts from IIS to Apache?

    - by omoto
    Hi all! I need to create something like proxy between IIS and Apache So hostheaders I would like to set up on IIS because it's Windows 2003 Server but I have some applications that should be hosted under Apache. In this case I think that I should set up something like proxy... Any ideas?

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  • When do you use a circular slider/knob in a good user interface?

    - by Koning Baard
    As I am familiar with some synthesizers, I often user real life circular sliders (e.g. to control the master volume), also called knobs. Like this one: Sometimes I also find these controls in virtual applications (yes I like extreme minimalism =P): But most of them are irritating, confusing or just wrong, and simple sliders could be used instead, making the UI much better. What are the advantages of circular sliders like the one in the screenshot above? And when do you use them? Thanks

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  • List of drugs for sample data

    - by Skoder
    Where can I find a list of common medical drugs? Researching and typing 150+ drug names would be quite inefficient. In general, are there any sites which have a list of items for developers to use in applications? For example, you can download dictionaries in specific formats (e.g. XML) for use in word games.

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  • WPF: Improving Performance for Running on Older PCs

    - by Phil Sandler
    So, I'm building a WPF app and did a test deployment today, and found that it performed pretty poorly. I was surprised, as we are really not doing much in the way of visual effects or animations. I deployed on two machines: the fastest and the slowest that will need to run the application (the slowest PC has an Intel Celeron 1.80GHz with 2GB RAM). The application ran pretty well on the faster machine, but was choppy on the slower machine. And when I say "choppy", I mean the cursor jumped even just passing it over any open window of the app that had focus. I opened the Task Manager Performance window, and could see that the CPU usage jumped whenever the app had focus and the cursor was moving over it. If I gave focus to another (e.g. Excel), the CPU usage went back down after a second. This happened on both machines, but the choppiness was only noticeable on the slower machine. I had very limited time to tinker on the deployment machines, so didn't do a lot of detailed testing. The app runs fine on my development machine, but I also see the CPU spiking up to 10% there, just running the cursor over the window. I downloaded the WPF performance tool from MS and have been tinkering with it (on my dev machine). The docs say this about the "Frame Rate" metric in the Perforator tool: For applications without animation, this value should be near 0. The app is not doing any heavy animation, but the frame rate stays near 50 when the cursor is over any window. The screens I tested on have column headers in a grid that "highlight" and buttons that change color and appearance when scrolled over. Even moving the mouse on blank areas of the windows cause the same Frame rate and CPU usage (doesn't seem to be related to these minor animations). (Also, I am unable to figure out how to get anything but the two default tools--Perforator and Visual Profiler--installed into the WPF performance tool. That is probably a separate question). I also have Redgate's profiling tool, but I'm not sure if that can shed any light on rendering performance. So, I realize this is not an easy thing to troubleshoot without specifics or sample code (which I can't post). My questions are: What are some general things to look for (or avoid) in the code to improve performance? What steps can I take using the WPF performance tool to narrow down the problem? Is the PC spec listed above (Intel Celeron 1.80GHz with 2GB RAM) too slow to be running even vanilla WPF applications?

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  • Validating Internationalized URLs

    - by VirtuosiMedia
    After reading about the new Arabic URLs, and with more languages to come, how should URL validation be done for internationalized applications? Does the validation change at all and will existing solutions break? Is regex still a good approach? If so, what would that regex look like? If not, what's a good strategy? What are some good resources to read more on the topic?

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  • Executing external executable to run and wait till it finishes and continue the setup using NSIS

    - by Ramesh
    I am new to NSIS install creator and I need to run an external executable because this is an prerequisite and once it if finished i will be continuing the setup. I tried the below code but it just copies the exe to the installation path. Section "example" example SetOutPath "$INSTDIR" MessageBox MB_OK \ "The applications." File "Prerequisites\setup.exe" ExecWait '"exec" /i "$INSTDIR\setup.exe" /passive' SetRebootFlag true SectionEnd

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  • Documents needed for software development process

    - by Jibu P C
    Hii, I am new to architectural designing of the applications, and our company is not following any procedures and we are not documenting any thing regarding the software development. So can anybody help me to understand regarding the above context. If you find any useful articles links please forward me.

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  • Why is hibernate open session in view considered a bad practice?

    - by HeDinges
    And what kind of alternative strategies do you use for avoiding LazyLoadExceptions? I do understand that open session in view has issues with: Layered applications running in different jvm's Transactions are committed only at the end, and most probably you would like the results before. But, if you know that your application is running on a single vm, why not ease your pain by using an open session in view strategy?

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  • Best way to communicate between 2 VB.Net apps?

    - by ajl
    If I control both applications, what is the best way to communicate between 2 exe's written in VB.Net. For example, I want to drop an XML file from one app, and pick it up with the other, but I do not want poll for the file. I've heard of named pipes, but I found it was complicated. What's the most effecient way to do this?

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  • Get Windows Last Reboot Timestamp?

    - by David.Chu.ca
    I have a PC on remote connected by network, but it occasionally crashes or is restarted by remote users. After the restart, some services and applications have to be in running status. So I would like to find out the reboot as soon as possible. I think PS may be a good choice with some scripts so that I could make remote call to get the last reboot timestamp information. Is there any way to get a remote Windows XP last reboot timestamp by using PowerShell 2.0?

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  • similar to __asm int 3 in Max OS X/ Xcode?

    - by Mark
    Hi, When using visual studio to develop c++ applications, I used to write _asm int 3; and then build the application. When the application is executed, if the code path that has "_asm int 3" is encountered Visual Studio Debugger used to get lauched and I could debug the problems. Is there any similar approach when developing using Xcode on Mac OS X? Thanks a lot. Mark

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  • iPhone apps for company-internal use - possible?

    - by Michael Stum
    I hope this is still programming related, as SuperUser doesn't seem the appropriate place. Basically I wonder if it is possible to have Applications that are internal to a company on the iPhone? That is something like a companion Application to an Intranet (when Safari and Mail just don't cut it) which wouldn't make sense on the AppStore (and likely wouldn't get approved anyway). Is something like that possible (without Jailbreaking or doing anything else that Apple doesn't normally want)?

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