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• Oracle R Distribution 3.1.1 Released

  - by Sherry LaMonica-Oracle

  Oracle R Distribution version 3.1.1 has been released to Oracle's public yum today. R-3.1.1 (code name "Sock it to Me") is an update to R-3.1.0 that consists mainly of bug fixes. It also includes enhancements related to accessing package help files, improved accuracy when importing data with large integers, and better integration with RStudio graphics. The full list of new features and bug fixes is listed in the NEWS file.To install Oracle R Distribution using yum, follow the instructions in the Oracle R Enterprise Installation and Administration Guide.Installing using yum will resolve any operating system dependencies automatically. As such, we recommend using yum to install Oracle R Distribution. However, if yum is not available, you can install Oracle R Distribution RPMs directly using RPM commands.For Oracle Linux 5, the Oracle R Distribution RPMs are available in the Enterprise Linux Add-Ons repository:  R-3.1.1-1.el5.x86_64.rpm   R-core-3.1.1-1.el5.x86_64.rpm  R-devel-3.1.1-1.el5.x86_64.rpm  libRmath-3.1.1-1.el5.x86_64.rpm  libRmath-devel-3.1.1-1.el5.x86_64.rpm  libRmath-static-3.1.1-1.el5.x86_64.rpm For Oracle Linux 6, the Oracle R Distribution RPMs are available in the Oracle Linux Add-Ons repository:  R-3.1.1-1.el6.x86_64.rpm  R-core-3.1.1-1.el6.x86_64.rpm  R-devel-3.1.1-1.el6.x86_64.rpm  libRmath-3.1.1-1.el6.x86_64.rpm  libRmath-devel-3.1.1-1.el6.x86_64.rpm  libRmath-static-3.1.1-1.el6.x86_64.rpmFor example, this command installs the R 3.1.1 RPM on Oracle Linux x86-64 version 6:  rpm -i R-3.1.1-1.el6.x86_64.rpm To complete the Oracle R Distribution 3.1.1 installation, repeat this command for each of the 6 RPMs, resolving dependencies as required. Oracle R Distribution 3.1.1 is not yet officially certified with Oracle R Enterprise. Refer to Table 1-2 in the Oracle R Enterprise Installation Guide for supported configurations of Oracle R Enterprise components, or check this blog for updates. The Oracle R Distribution 3.1.1 binaries for Windows, AIX, Solaris SPARC and Solaris x86 will be available on OSS, Oracle's Open Source Software portal, in the coming weeks.

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• Achieving decoupling in Model classes

  - by Guven

  I am trying to test-drive (or at least write unit tests) my Model classes but I noticed that my classes end up being too coupled. Since I can't break this coupling, writing unit tests is becoming harder and harder. To be more specific: Model Classes: These are the classes that hold the data in my application. They resemble pretty much the POJO (plain old Java objects), but they also have some methods. The application is not too big so I have around 15 model classes. Coupling: Just to give an example, think of a simple case of Order Header - Order Item. The header knows the item and the item knows the header (needs some information from the header for performing certain operations). Then, let's say there is the relationship between Order Item - Item Report. The item report needs the item as well. At this point, imagine writing tests for Item Report; you need have a Order Header to carry out the tests. This is a simple case with 3 classes; things get more complicated with more classes. I can come up with decoupled classes when I design algorithms, persistence layers, UI interactions, etc... but with model classes, I can't think of a way to separate them. They currently sit as one big chunk of classes that depend on each other. Here are some workarounds that I can think of: Data Generators: I have a package that generates sample data for my model classes. For example, the OrderHeaderGenerator class creates OrderHeaders with some basic data in it. I use the OrderHeaderGenerator from my ItemReport unit-tests so that I get an instance to OrderHeader class. The problem is these generators get complicated pretty fast and then I also need to test these generators; defeating the purpose a little bit. Interfaces instead of dependencies: I can come up with interfaces to get rid of the hard dependencies. For example, the OrderItem class would depend on the IOrderHeader interface. So, in my unit tests, I can easily mock the behaviour of an OrderHeader with a FakeOrderHeader class that implements the IOrderHeader interface. The problem with this approach is the complexity that the Model classes would end up having. Would you have other ideas on how to break this coupling in the model classes? Or, how to make it easier to unit-test the model classes?

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• Is there a usage count for packages or programs?

  - by math

  Motivation: I want to remove applications I do not use to speed up my package processing tasks like dist upgrades, regular updates, but also for saving disk space and other reasons. I know this is a complex topic so first I will ask my question and second I will give some answers I already found out. Question: How do I find out which package I did not used at all? For example I always use the VLC so I could remove totem package. (Which I could have been used some day, yes.) Of course package dependencies could force me to have programs installed which I will never use. Notes: Find the packages which consume much space via synaptic: Select "Status" in lower left, select "Installed" in upper left, sort column on "size" in upper right. Then you can decide which big packages you really need. Use aptitude autoremove Use ubuntu-tweak's Janitor for removing old kernel packages, old configs, apt-cache entries, etc. Manually search for applications for a given task that you usually solve with your standard app. E.g. Movie player, Music player, Office program, Browser etc. (BTW: this is what I want to be helped with my question) When removing packages I always favour "apt-get purge" over "aptitude remove --purge" as aptitude often will also remove essential packages due to package dependencies. E.g. when removing "evolution" (as I use thunderbird) aptitude wants to remove also "ubuntu-desktop" and 756 other packages as well, while apt-get just removes evolution and its helping pacakges like evolution-common. Ubuntu lense gives me most recent used applications which are candidates for keeping :) Employ deborphan as I read in this related answer: How do I clean up my harddrive? I should certainly keep essential packages: Keep only essential packages This question is pretty much a duplicate of How to see what installed packages I have never used for cleaning purposes but covering only few aspects. However one answer suggests to use a program called unusedpkg but the link seems down. There is also a program called Kleen http://code.google.com/p/kleen/ but it won't compile in 11.10. However I hacked it to compile but the results are unusable, as for example the g++ package was marked as not used for 203, but actually I used it seconds ago for compiling Kleen itself ;) So don't use this tool. On http://wiki.debian.org/DebianPackageInformation I read the the package popularity-contest will produce log files with usage statistics. Unfortunately I didn't enabled the popularity contest so I can't find this log file.

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• IPS Package Groups

  - by Alan_Solaris_RE

  IPS group packages consist solely of dependencies on other packages that make up a logical grouping of software. These are similar to, but not the equivalent of, Solaris 10 metaclusters. The main difference is that metaclusters are nested subsets ranging from a minimal install to nearly all packages on the media. Group packages have no such hierarchy. They can overlap other groups, or be completely disjoint sets. A group dependency is set this way in an IPS package manifest file: depend fmri=full/pkg/name type=group Current Solaris Groups Solaris currently has 4 system groups defined. These are used for different types of installation, and are included in the xml manifest files used by the various Solaris installers: Package Name Summary Description Default Installation For:  group/system/solaris-desktop Oracle Solaris Desktop Provides an Oracle Solaris desktop environment Live Media  group/system/solaris-large-server Oracle Solaris Large Server Provides an Oracle Solaris large server environment Text Installer  group/system/solaris-small-server Oracle Solaris Small Server Provides a useful command-line Oracle Solaris environment  Zones  group/system/solaris-auto-install  Oracle Solaris Automated Installer Client  Provides an Oracle Solaris Automated Installer client  Automated Installer There are also several "feature" groups such as AMP and GNU Developer Tools. These are provided for convenience, but are not used directly by any installers. Retrieving Group Package Information A listing of all current groups can be found with the command: pkg info -r group/* A listing of all the packages in a group can be obtained with: pkg contents -o fmri -H -rt depend -a type=group groupname An example: $ pkg contents -o fmri -H -rt depend -a type=group solaris-desktop archiver/gnu-tar audio/audio-utilities codec/flac codec/libtheora codec/ogg-vorbis codec/speex communication/im/pidgin etc. You can determine which package group is currently installed on your system: $ pkg list group/system/\* Output would look like: NAME (PUBLISHER) VERSION IFO group/system/solaris-desktop 0.5.11-0.175.0.0.0.0.0 i-- Note that there are not version numbers associated with a group package dependency. The package version that best fits the system will be used, based on other dependencies such as what is listed in incorporation files. Installing a Group To Install a group, simple use the group package name as you would any other package: $ pkg install solaris-small-server  If you want to exclude a package from installing, you can use the --reject flag: $ pkg install --reject audio/audio-utilities solaris-desktop Creating Your Own Group To create your own group package, you can follow the pkg(5) documentation on how to create a package, and use this action for each package that is part of your group:   depend fmri=full/pkg/name type=group

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• How can I make sure one Upstart job starts before other Upstart jobs?

  - by marrusl

  This is a general Upstart question, but let me use a specific case: Centrify is an NIS to ActiveDirectory gateway. It needs to load before any service that will depend the authentication service that it provides, e.g. autofs, cron, nis, et al. This has proven to be quite challenging to achieve, even when trying to change the dependencies of the other services (which I don't think we should be doing anyway, I don't want to touch the other Upstart jobs if at all possible). Suggestions?

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• Test-only Members: Good or Bad?

  In the article, Dino focuses on two particular situations: dealing with dependencies and testing private members. He'll be discussing this in the context of ASP.NET MVC and MSTest, but without any significant loss of generality.

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• indicator-messages absent in 13.04 fresh install

  - by Isammoc

  I can't find a way to show the "blue mail" indicator What I think : this indicator is called "indicator-messages" Ubuntu change some things (like removing the whitelist) I tried : to reinstall indicator-messages package multiple reboots to create another account (if there was specific configuration I made in ~/.config) What I have done : installed aptitude aptitude update && aptitude upgrade fresh install Ubuntu 13.04 amd64 uninstall all packages with ubuntuone (with automatic dependencies) configure twitter account (settings - online accounts) installed gwibber reboot $ uname -a Linux Antsirabe 3.8.0-23-generic #34-Ubuntu SMP Wed May 29 20:22:58 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux Thanks for your time!

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• Using macro as an abstraction layer

  - by tehnyit

  I am having a discussion with a colleague about using macro as a thin (extremely) layer of abstraction vs using a function wrapper. The example that I used is Macro way. #define StartOSTimer(period) (microTimerStart(period)) Function wrapper method void StartOSTimer(period) { microTimerStart(period); } Personally, I liked the second method as it allows for future modification, the #include dependencies are also abstracted as well.

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• Launchpad failed to build after "quickly submitubuntu"

  - by function

  I uploaded my python project by running "quickly submitubuntu", but it failed to build on Launchpad. "quickly submitubuntu" is supposed to add package dependencies automatically, but the error log https://launchpadlibrarian.net/108711786/buildlog_ubuntu-precise-i386.indicator-launcher_12.06.24_FAILEDTOBUILD.txt.gz says some python modules aren't found; for example "ERROR: Python module gconf not found". Is this a bug in quickly, or is there something wrong in my program?

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• Can't install a dependency?

  - by Chibueze Opata

  I've been trying to install 'boot-repair' but it keeps saying: The following packages have unmet dependencies: Depends: boot-sav (= 3.196) but 3.196~ppa3~quantal is to be installed E: Unable to correct problems, you have held broken packages. When I try installing 'boot-sav', everything seems okay, but when I try it again, it just shows the same message over and over again. How can I fix such a problem? Thanks.

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• Cannot install "ATI/AMD proprietary FGLRX graphics driver" (SystemError)

  - by Fisherman John

  I have just installed a fresh copy of 12.04.1 64bit. I formatted my PC completely and enabled updates during the installation. After the installation was complete, I went on updating my software. However, when I wanted to install the additional drivers using the Additional Drivers tool (namely "ATI/AMD proprietary FGLRX graphics driver"), it gave me this error: SystemError: E:Unable to correct problems, you have held broken packages. The same error shows up if I try installing the post-release updates driver. Installing the drivers from the terminal results in this output: XXXXXX:~$ sudo apt-get install fglrx [sudo] password for XXXXX: Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: fglrx : Depends: lib32gcc1 but it is not going to be installed Depends: libc6-i386 but it is not going to be installed E: Unable to correct problems, you have held broken packages." I get this using "sudo apt-get update": http://pastebin.com/AWAtDXjY But "sudo apt-get install fglrx" still get me this error: http://pastebin.com/RYM55bVN & "sudo apt-get -f install fglrx" gives me this error: http://pastebin.com/xxekajvP Any help would be greatly appreciated. (Please note that I'm new to Linux, coming directly from Windows. I have tried Ubuntu twice or so before, but it was not for a long period of time. The drivers got installed smoothly the few times I've tried Ubuntu, but post-release updates never worked for me.) [I am going to work now, so I can only answer from my phone. Can't really test any new solutions you may give me until ~10 hours from now on. Maybe more.] @stonedsquirrel When I try to run that command, I get this error: "XXXXXX:~$ sudo apt-get install fglrx [sudo] password for XXXXX: Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: fglrx : Depends: lib32gcc1 but it is not going to be installed Depends: libc6-i386 but it is not going to be installed E: Unable to correct problems, you have held broken packages." ie. I get the same error. ( I am Fisherman John, dunno how to login & thereby respond to your comment again _ )

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• GUI for editing Menu in Xubuntu

  - by Borsook

  I see that Xubuntu has package Gnome-menus, but I cannot find the command to run the editor it should contain. I found a small editor but it does not allow new entries and alacarte tries to install whole Gnome... So I'm looking for a menu editor that will allow me to: Add new launchers, Edit existing ones Move existing ones to different categories Create new categories Won't install bazillion dependencies :)

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• How to redistribute binary programs built on modern Ubuntu so that they can be executed on any older Linux system ?

  - by psihodelia

  I found that if I build any binary on Ubuntu 10.10, then it doesn't execute on some older Linuxes. It is because Ubuntu uses a very new C library, called EGLIBC. Most of the desktop Linux systems use GLIBC. I would like to know whether there is any standard method how to redistribute binary programs built on a modern Ubuntu so that they can be executed on any older Linux system ? How to find all required dependencies (glibc version, dynamic libraries) ?

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• SQL Server 2012 Integration Services - Package and Project Parameters

  In SQL Server 2012, Microsoft introduced SQL Server Data Tools to accommodate the dynamic nature of SSIS constructs in the form of package and project parameters. This approach lets you combine multi-package projects into a single unit, eliminating the possibility of breaking dependencies between parent and child packages during subsequent deployments. Get smart with SQL Backup ProGet faster, smaller backups with integrated verification.Quickly and easily DBCC CHECKDB your backups. Learn more.

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• How to see installed programs and the occupied space (not in Synaptic or Terminal)?

  - by cipricus

  I am often running low on space on the system and home partition. I would like to see a list of installed programs and the space they take, in order to be able to make decisions on this matter. I do not mean a list with all components, 'secondary' programs and dependencies like in Synaptic, which I know can be also displayed in the Terminal -- so please do not set as duplicate of this question --, but just a list with the main programs (those that appear in the main menu) and with the space they occupy on the disk. (I use Xubuntu 12.10)

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• how to safely Uninstall Ubuntu 12.04 and reinstall 11.10

  - by Jmais

  I upgraded from 11.10 to 12.04 following the instructions here. https://help.ubuntu.com/community/PreciseUpgrades. But after the upgrade a lot of my image processing packages don't work some of their dependencies have been removed. Honestly there is not that much difference between 11.10 and 12.04. So please can someone tell me how to safely remove 12.04 and go back to 11.10 without losing documents, and source packages on my old Ubuntu. Thanks

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• A problem with installing skype

  - by Arnas

  I recently got a 9,04 version of ubuntu and for the past day i was trying to install skype ( sounds funny i know ) and when I write 'sudo apt-get install skype' I get this error in the terminal The following packages have unmet dependencies: skype: Depends: libqt4-dbus (>= 4.4.3) but 4.4.0-1ubuntu5~hardy1 is to be installed Depends: libqt4-network (>= 4.4.3) but 4.4.0-1ubuntu5~hardy1 is to be installed Depends: libqtcore4 (>= 4.4.3) but 4.4.0-1ubuntu5~hardy1 is to be installed Depends: libqtgui4 (>= 4.4.3) but it is not installable How could I fix this problem? THanks

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• How to remove configuration files completely

  - by Jasper Loy

  Recently I uninstalled some software using sudo apt-get --purge autoremove, thinking that this would remove all traces of it including unused dependencies and configuration files. However I discovered that a configuration file was left behind in my home folder. Is there a more powerful command which would remove even that? As a related question about keeping things clean , is is safe to delete the hidden files and folders under home, if they are merely configuration files, or are there other kinds of files?

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• Trying to install gnome 3 through ubuntu 11.10

  - by Marco

  I keep getting this error when I try to install gnome 3 from the software center-- The following packages have unmet dependencies: gnome: Depends: gnome-core (= 1:3.0+1ubuntu1) but 1:3.0+1ubuntu1 is to be installed I did install what they needed from this website https://launchpad.net/ubuntu/oneiric/amd64/gnome-core-devel/1:3.0+1ubuntu1 but nothing really changed, I kept getting the same error message.

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• Failing package manager?

  - by ad3l1n3

  I am trying to download kcachegrind after a reinstallation of my OS. But I keep getting "dependency" failures. I have tried going through the Ubuntu software manager (which worked perfectly before...) and Synaptic. With synaptic, I got specific package failures and when I searched for the packages I got more package dependencies. After the 5th time of this I gave up because there must be something else going on. Please help?

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• Runnin Framework 4.0 with Powershell

  - by Mike Koerner

  I had problems running scripts with Framework 4.0 assemblies I created.  The error I was getting was  Add-Type : Could not load file or assembly 'file:///C:\myDLL.dll' or one of its dependencies. This assembly is built by a runtime newer than the currently loaded runtime and cannot be loaded. I had to add the supported framework to the powershell.exe.config file.<supportedRuntime version="v4.0.30319"/>I still had a problem running the assembly so I had to recompile and set "Generate serialization Assembly" to off.

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• apt-get -f install removed software center and several other files

  - by user287858

  I ran sudo apt-get -f install and several files and programs were removed including software center. Is there a way to re-download everything as if ubuntu was new again without a cd? This computer does not have a cd-rom drive. I'd be fine with losing all the data on this computer. Also, when I run sudo apt-get install (almost anything) I get errors about dependencies and files not being available. Thanks to anyone who can help.

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• **plz help. skype wont install**

  - by ubuntukululu

  Whenever I try to install it it says, Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming The following information may help to resolve the situation: The following packages have unmet dependencies: skype : Depends: skype-bin but it is not installable E: Unable to correct problems, you have held broken packages. I have tried stuff people told me to do and I still can not get it to work.

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• fedora12, yum not releasing "lock" after performing an action

  - by James.Elsey

  Hello, This problem has been occurring quite frequently recently and I can't seem to find a way of preventing it. Whenever I perform an action with yum such as to install or remove software, it appears to execute successfully but then I'm unable to move onto the next yum command For example, I executed yum remove skype, it appeared to remove ok, but next when I try to yum search skype it appears that yum is still processing, and I have to manually kill that process via kill 1234 (or whatever the PID is) My output is as follows [root@nevada james]# yum remove skype Loaded plugins: presto, refresh-packagekit Setting up Remove Process Resolving Dependencies --> Running transaction check ---> Package skype.i586 0:2.1.0.47-fc10 set to be erased --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Removing: skype i586 2.1.0.47-fc10 installed 24 M Transaction Summary ================================================================================ Remove 1 Package(s) Reinstall 0 Package(s) Downgrade 0 Package(s) Is this ok [y/N]: y Downloading Packages: Running rpm_check_debug Running Transaction Test Finished Transaction Test Transaction Test Succeeded Running Transaction Erasing : skype-2.1.0.47-fc10.i586 1/1 Removed: skype.i586 0:2.1.0.47-fc10 Complete! [root@nevada james]# yum search skype Loaded plugins: presto, refresh-packagekit Existing lock /var/run/yum.pid: another copy is running as pid 3639. Another app is currently holding the yum lock; waiting for it to exit... The other application is: PackageKit Memory : 79 M RSS (372 MB VSZ) Started: Fri Dec 18 08:39:18 2009 - 00:01 ago State : Sleeping, pid: 3639 Kernel version : 2.6.31.6-166.fc12.x86_64 Any ideas how I can prevent this behaviour? Thanks

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• How do I install an rpm that complains about rpmlib(FileDigests) <= 4.6.0-1?

  - by Jake

  Im trying to install an rpm file on CentOS 5 and Im not sure how to resolve this issues it brings up: $ rpm --install epel-release-6-5.noarch.rpm warning: epel-release-6-5.noarch.rpm: Header V3 RSA/SHA256 signature: NOKEY, key ID 0608b895 error: Failed dependencies: rpmlib(FileDigests) <= 4.6.0-1 is needed by epel-release-6-5.noarch rpmlib(PayloadIsXz) <= 5.2-1 is needed by epel-release-6-5.noarch What do the lines rpmlib(FileDigests) <= 4.6.0-1 mean? is rpmlib out of date or FileDigests out of date? Whats with the syntax of something followed by parentheses? Ive tried to use yum so that it can resolve dependencies automatically but it is unable: $ sudo yum --nogpgcheck install epel-release-6-5.noarch.rpm ... Running rpm_check_debug ERROR with rpm_check_debug vs depsolve: rpmlib(FileDigests) is needed by epel-release-6-5.noarch rpmlib(PayloadIsXz) is needed by epel-release-6-5.noarch Complete! (1, [u'Please report this error in https://bugzilla.redhat.com/enter_bug.cgi?product=Red%20Hat%20Enterprise%20Linux%205&component=yum']) On this page https://bugzilla.redhat.com/show_bug.cgi?id=665073, they say my rpm is out of date but then say I should request an rpm file that works with my version of rpm (which is 4.4.2.3) but I don't want to do that. How do I make my system compatible with this rpm file? Bonus points if you tell me how I can fix the public key error.

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