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  • Merging list problem

    - by Martin Malmstrøm
    Sorry about the bad heading, but the question was not easy to compress into one sentence... I have two lists of contigs (list1 and list2). They contain mostly unique contigs, but with some overlap. I want to compare list1 and list2 and then create a list3 that contains all contigs in list1 minus those also present in list2. Is this possible with a simple cat/paste/grep/sort/uniq kind of batch command? Thanks!

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  • How do make dependency generation work for C? (Also..decode this sed/make statement!)

    - by Derek
    Hi all. I have a make build system that I am trying to decipher that someone else wrote. I am getting an error when I run it on a redhat system, but not when I run it on my solaris system. The versions of gmake are the same major revision (one off on minor revision). This is for building a C project, and the make system has a global Makefile.global that is inherited by each directory's local Makefile The Makefile.global has all the targets in it, starting with all: $(LIB) $(BIN) where LIB builds libs and BIN builds binaries. jumping down the targets I have $(LIB) : $(GEN_LIB) $(GEN_LIB) : $(GEN_DEPS) $(GEN_OBJS) $(AR) $(ARFLAGS) $(GEN_LIB) $(GEN_OBJS) $(GEN_DEPS) : @set -e; rm -f $@; \ $(CC) $(CDEP_FLAG) $(CFLAGS) $(INCDIRS) `basename $@ | sed 's/\.d/\.c/' | sed 's,^,$(HOME_SRC)/,'` | sed 's,\(.*\)\.o: ,$(GEN_OBJDIR)/\1.o $@ :,g' > [email protected] ; \ cat [email protected] > $@ ; \ cat [email protected] | cut -d: -f2 | grep '\.h' | sed 's,\.h,.h :,g' >> $@ ; \ rm [email protected] $(GEN_OBJS) : $(CC) $(CFLAGS) $(INCDIRS) -c $(*F).c -lmpi -o $@ I think these are all the relevant targets I need to include to answer my question. Definitions of those variables: CC = icc CDEP_FLAG = -M CFLAGS = various compiler flags ifdef type flags INCDIRS = include directory where all .h files are GEN_OBJDIR = /lib/objs HOME_SRC = . GEN_LIB = lib/$(LIB) GEN_DEPDIR=/lib/deps GEN_DEPS = $(addprefix $(GEN_DEPDIR)/,$(addsuffix .d,$(basename $(OBJS)))) I think this has everything covered you need. Basically self explanatory from the names. Now as best I can tell, this is generating in /lib/deps a .d file that has the object and source dependencies in it. In other words, for the utilities.a library, I will get a utils.o and utils.c dependency stack, all in the file utils.d There is some syntax error that is being generated in that file I think, because I get the following error: ../lib/deps/util.d:25: *** target pattern contains no '%'. Stop. gmake[2]: *** [all] Error 2 gmake[1]: *** [all] Error 2 gmake: *** [all] Error 2 I am not sure if my error is in the dependency generation, or some further down part, like the object generation target? If you need further info, let me know, I will add to post

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  • How to set an onClick attribute that would load dynamic content?

    - by konzepz
    This code is suppose to add an onClick event to each of the a elements, so that clicking on the element would load the content of the page dynamically into a DIV. Now, I got this far - It will add the onClick event, but how can I load the dynamic content? $(document.body).ready(function () { $("li.cat-item a").each(function (i) { this.setAttribute('onclick','alert("[load content dynamically into #preview]")'); }); }); Thank you.

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  • Using Flash and ActiveMQ

    - by Acet
    Hey all, Ive been using ActiveMQ as a message broker and have been able to get Flex to subscribe to a topic and receive messages using this library and flexonrails.net/?cat=26 (cant add second link) as a guide. However I've been unable to achieve the same goal in Flash. Does anyone know how to use this library in Flash or know any tutorials that could be of use?

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  • Multiple Regex on String

    - by George
    How can I apply multiple regexs to a single string? For instance, a user inputs the following into a text area: red bird blue cat black dog and I want to replace each carriage return with a comma and each space with an underscore so the final string reads as red_bird,blue_cat,black_dog. I've tried variations in syntax along the lines of the following so far: function formatTextArea() { var textString = document.getElementById('userinput').value; var formatText = textString.replace( new RegExp( "\\n", "g" ),",", new RegExp( "\\s", "g"),"_"); alert(formatText); }

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  • How to get CVS notification emails to contain link to diff ?

    - by Ro
    Hi All, Is there any way to get CVS e-mail notifications to inlude links to my ViewCVS server where clicking a link could bring up the diff ? Currently my loginfo file just has entries like this ^installation cat | /usr/bin/Mail -s "[cvs-update installation]" [email protected] The e-mails we all then get (Afairly standard I imagine) contain the commit message and list of files changed. Cheers, Ro

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  • Does a .cs file compile under a .vbproj?

    - by serhio
    Does a .cs(C#) file compile under a .vbproj(VB.NET project) ? (VS 2005, .NET 2) Say I have Animals.vbproj (namespace Animals) I have Wolf.vb, Tiger.vb, Cat.vb, and a Human.cs Could I use Animals.Human from a external AnimalsForm.vb form? Why?

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  • file content into unix variable with newlines

    - by Hugo
    I have a text file test.txt with the following content: text1 text2 And I want to assign the content of the file to a UNIX variable but when I do this: testvar=$(cat test.txt) echo $testvar the reult is: text1 text2 instead of text1 text2 Can someone suggest me a solution for this?

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  • sed 's/this/that/' -- ignoring g but still replace entire file

    - by lakshmipathi
    as title said, Im trying to change only the first occurrence of word.By using sed 's/this/that/' file.txt though i'm not using g option it replace entire file. How to fix this.? UPDATE: $ cat file.txt first line this this this this $ sed -e '1s/this/that/;t' file.txt first line this // ------> I want to change only this "this" to "that" :) this this this

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  • What is the cleanest way to do a sort plus uniq on a Python list?

    - by knorv
    Consider a Python list my_list containing ['foo', 'foo', 'bar']. What is the most Pythonic way to uniqify:ing and sorting and the list (think cat my_list | sort | uniq)? This is how I currently do it and while it works I'm sure there are better ways to do it. my_list = [] ... my_list.append("foo") my_list.append("foo") my_list.append("bar") ... my_list = set(my_list) my_list = list(my_list) my_list.sort()

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  • open file for reading multibale time for reading

    - by alaamh
    I want to use dup2 to read from input file and redirect it to the input of exec function. but my problem is i have three running process all of them have to open same input file but they do different jobs. what your suggest in such case? i don't know if it is possible to use "cat data.txt" to feed the input for the three other process but i don't know the way to do that.

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  • How do I find the original git user?

    - by Michael
    Hi all, I'm trying to figure out the current installation of git on a slicehost server. Following this guide, one of the early steps is to add a user, git. However, when I do a cat /etc/passwd, I don't see this user name... How do I find where my git user is? Thanks!

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  • Extract IDs from CSS

    - by nosuchip
    I've the CSS file with many entry like id1, #id2, #id3, #id4 { ... } id3, #id2 { ... } id2, #id4 { ... } I want to extract list of unique IDs using command line tools (msys). Unique means any entry in list presented only once. How? PS: I know how doing it using python, but what about awk/sed/cat?

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