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• nginx serves broken characters (nginx on linux as guest system in vbox)

  - by Andrew123321

  I have nginx 1.2.0-1 on debian 6.0.5. I have file test.css. I fill it with "abcd1234". Open it in browser. Then I change the content to "mnop". I receive "abcd" in response. I have all the files in folder shared between Windows (host) and Debian (guest) using Virtual Box. When I put the file elsewhere the problem does not occur! Any idea what can cause this? Thank you (I've been editing question as I was discovering the problem)

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• Linux Centos - Mail Deamon Preferences

  - by Iestyn

  I keep getting emails from root into my inbox, I get about 30 a day which is annoying as hell and I'm wondering how I can filter these emails down so that I only receive the essential emails. I don't want to have an email every single time I log in via SSH, but when you 30-40 a day sometimes it can get pretty annoying. Is there a section in cPanel or WHM where I can tick or un-tick a section to choose which emails I wish to receive? I also get mail deamon bounce email messages which I'd also like to disable. I've looked and looked, but I think I'm either overlooking something simple or I'm looking in the wrong place.

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• Accessing global variable in multithreaded Tomcat server

  - by jwegan

  I have a singleton object that I construct like thus: private static volatile KeyMapper mapper = null; public static KeyMapper getMapper() { if(mapper == null) { synchronized(Utils.class) { if(mapper == null) { mapper = new LocalMemoryMapper(); } } } return mapper; } The class KeyMapper is basically a synchronized wrapper to HashMap with only two functions, one to add a mapping and one to remove a mapping. When running in Tomcat 6.24 on my 32bit Windows machine everything works fine. However when running on a 64 bit Linux machine (CentOS 5.4 with OpenJDK 1.6.0-b09) I add one mapping and print out the size of the HashMap used by KeyMapper to verify the mapping got added (i.e. verify size = 1). Then I try to retrieve the mapping with another request and I keep getting null and when I checked the size of the HashMap it was 0. I'm confident the mapping isn't accidentally being removed since I've commented out all calls to remove (and I don't use clear or any other mutators, just get and put). The requests are going through Tomcat 6.24 (configured to use 200 threads with a minimum of 4 threads) and I passed -Xnoclassgc to the jvm to ensure the class isn't inadvertently getting garbage collected (jvm is also running in -server mode). I also added a finalize method to KeyMapper to print to stderr if it ever gets garbage collected to verify that it wasn't being garbage collected. I'm at my wits end and I can't figure out why one minute the entry in HashMap is there and the next it isn't :(

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• Can shared memory be read and validated without mutexes?

  - by Bribles

  On Linux I'm using shmget and shmat to setup a shared memory segment that one process will write to and one or more processes will read from. The data that is being shared is a few megabytes in size and when updated is completely rewritten; it's never partially updated. I have my shared memory segment laid out as follows: ------------------------- | t0 | actual data | t1 | ------------------------- where t0 and t1 are copies of the time when the writer began its update (with enough precision such that successive updates are guaranteed to have differing times). The writer first writes to t1, then copies in the data, then writes to t0. The reader on the other hand reads t0, then the data, then t1. If the reader gets the same value for t0 and t1 then it considers the data consistent and valid, if not, it tries again. Does this procedure ensure that if the reader thinks the data is valid then it actually is? Do I need to worry about out-of-order execution (OOE)? If so, would the reader using memcpy to get the entire shared memory segment overcome the OOE issues on the reader side? (This assumes that memcpy performs it's copy linearly and ascending through the address space. Is that assumption valid?)

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• Why ntp settle time toe long?

  - by fercis

  I simply try to set-up NTP to my system. Both server and clients will run on my computer which are linked together with local link. One of them will have the reference clock. Both the server and Client are linux Ubuntu. I install ntp daemon to both sides. In clients, I enter the ip address of the server to /etc/ntp.conf. Everything works fine. However, the setting of the time to correct time in client side takes too long time (around 17 minutes). Is it possible to gather correct time just at startup. I write some code that regularly calls "ntpdate " by system call and the problem is solved but there has to be something that allows me to decrease the poll time of the client to 1-2 minutes. There are some settings as maxpoll - minpoll in ntp.conf, but I couldn't manage to understand their function, because with the best configuration (minpoll 4? 16 seconds?) I also cannot see that client side corrects its time before 10 minutes. In addition, in some cases my client is an embedded system (ARM - IGEP board) and it always opens with an irrelevant date (2-3 years ago). So the time that takes to correct the time should not depend on the time difference also.

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• Problem with setjmp/longjmp

  - by user294732

  The code below is just not working. Can anybody point out why #define STACK_SIZE 1524 static void mt_allocate_stack(struct thread_struct *mythrd) { unsigned int sp = 0; void *stck; stck = (void *)malloc(STACK_SIZE); sp = (unsigned int)&((stck)); sp = sp + STACK_SIZE; while((sp % 8) != 0) sp--; #ifdef linux (mythrd->saved_state[0]).__jmpbuf[JB_BP] = (int)sp; (mythrd->saved_state[0]).__jmpbuf[JB_SP] = (int)sp-500; #endif } void mt_sched() { fprintf(stdout,"\n Inside the mt_sched"); fflush(stdout); if ( current_thread->state == NEW ) { if ( setjmp(current_thread->saved_state) == 0 ) { mt_allocate_stack(current_thread); fprintf(stdout,"\n Jumping to thread = %u",current_thread->thread_id); fflush(stdout); longjmp(current_thread->saved_state, 2); } else { new_fns(); } } } All I am trying to do is to run the new_fns() on a new stack. But is is showing segmentation fault at new_fns(). Can anybody point me out what's wrong.

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• Linux server: Dropped packets

  - by Lars

  I see dropped packets using ifconfig on my eth0 interface: eth0 Link encap:Ethernet HWaddr 00:15:17:0d:03:ca inet addr:10.0.1.2 Bcast:10.0.1.255 Mask:255.255.255.0 UP BROADCAST RUNNING MULTICAST MTU:9000 Metric:1 RX packets:30268348 errors:0 dropped:70721 overruns:0 frame:0 TX packets:133076885 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:1000 RX bytes:8699434077 (8.6 GB) TX bytes:194937313025 (194.9 GB) Interrupt:16 Memory:feae0000-feb00000 When i use ethtool -S i dont see anything wrong: NIC statistics: rx_packets: 30267138 tx_packets: 133074510 rx_bytes: 8699356158 tx_bytes: 194934147340 rx_broadcast: 35296 tx_broadcast: 5435 rx_multicast: 0 tx_multicast: 0 rx_errors: 0 tx_errors: 0 tx_dropped: 0 multicast: 0 collisions: 0 rx_length_errors: 0 rx_over_errors: 0 rx_crc_errors: 0 rx_frame_errors: 0 rx_no_buffer_count: 0 rx_missed_errors: 0 tx_aborted_errors: 0 tx_carrier_errors: 0 tx_fifo_errors: 0 tx_heartbeat_errors: 0 tx_window_errors: 0 tx_abort_late_coll: 0 tx_deferred_ok: 0 tx_single_coll_ok: 0 tx_multi_coll_ok: 0 tx_timeout_count: 0 tx_restart_queue: 0 rx_long_length_errors: 0 rx_short_length_errors: 0 rx_align_errors: 0 tx_tcp_seg_good: 5757001 tx_tcp_seg_failed: 0 rx_flow_control_xon: 8649 rx_flow_control_xoff: 62072 tx_flow_control_xon: 0 tx_flow_control_xoff: 0 rx_long_byte_count: 8699356158 rx_csum_offload_good: 30212111 rx_csum_offload_errors: 0 rx_header_split: 10857552 alloc_rx_buff_failed: 0 tx_smbus: 0 rx_smbus: 0 dropped_smbus: 0 rx_dma_failed: 0 tx_dma_failed: 0 I am running Ubuntu 12.04 with kernel 3.2.0-30-generic #48-Ubuntu SMP I have pinged every device on my internal network for about 24 hours, without packet loss. Also checked my router and my interface to the WAN, also no errors there. Does anyone have any clue?

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• cannot send mail to postfix /w iptables linux proxy

  - by Juzzam

  I have two separate servers, both running Ubuntu 8.04. Server 1 has the real domain name of our site, let's refer to it as example.com. Server 2 is a mail server I have setup with postfix/courier. The hostname for this server is mail.example.com. I've setup iptables on Server 1 to forward all traffic on port 25 to Server 2. I used this script (except I changed the target ip address and the port from 80 to 25). When I send an email to [email protected] it works. However, when I try to send an email to [email protected] from gmail, I get this error: 550 550 #5.1.0 Address rejected [email protected] (state 14) /var/log/mail.log shows no new lines when this happens. What is strange is that it works with telnet from my local machine. For example: $ telnet example.com 25 220 VO13421.localdomain SMTP Postfix EHLO example.com 250-VO13421.localdomain 250-PIPELINING 250-SIZE 10240000 250-ETRN 250-STARTTLS 250-ENHANCEDSTATUSCODES 250-8BITMIME 250 DSN MAIL FROM: [email protected] 250 2.1.0 Ok RCPT TO: [email protected] 250 2.1.5 Ok data 354 Please start mail input. hello user... how have you been? . 250 Mail queued for delivery. quit 221 Closing connection. Good bye. /var/log/mail.log shows success (and the email goes to the maildr): Feb 24 09:47:36 VO13421 postfix/smtpd[2212]: connect from 81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] Feb 24 09:48:01 VO13421 postfix/smtpd[2212]: warning: restriction `smtpd_data_restrictions' after `permit' is ignored Feb 24 09:48:01 VO13421 postfix/smtpd[2212]: 65C68120321: client=81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] Feb 24 09:48:29 VO13421 postfix/smtpd[2212]: warning: restriction `smtpd_data_restrictions' after `permit' is ignored Feb 24 09:48:29 VO13421 postfix/smtpd[2212]: 6BDFA120321: client=81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] Feb 24 09:48:29 VO13421 postfix/cleanup[2216]: 6BDFA120321: message-id= Feb 24 09:48:29 VO13421 postfix/qmgr[2042]: 6BDFA120321: from=, size=395, nrcpt=1 (queue active) Feb 24 09:48:29 VO13421 postfix/virtual[2217]: 6BDFA120321: to=, relay=virtual, delay=0.28, delays=0.25/0.02/0/0.01, dsn=2.0.0, status=sent (delivered to maildir) Feb 24 09:48:29 VO13421 postfix/qmgr[2042]: 6BDFA120321: removed Feb 24 09:48:30 VO13421 postfix/smtpd[2212]: disconnect from 81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] iptables -L -n -v --line on example.com yields the following. Anyone know an iptables command to see the port forwarding? Also, it seems to accept all traffic, that's probably bad right? ;] num pkts bytes target prot opt in out source destination 1 14041 1023K ACCEPT all -- * * 0.0.0.0/0 0.0.0.0/0 Chain FORWARD (policy ACCEPT 0 packets, 0 bytes) num pkts bytes target prot opt in out source destination 1 338 20722 ACCEPT all -- * * 0.0.0.0/0 0.0.0.0/0 Chain OUTPUT (policy ACCEPT 419K packets, 425M bytes) num pkts bytes target prot opt in out source destination 1 13711 2824K ACCEPT all -- * * 0.0.0.0/0 0.0.0.0/0 postconf -n results in: alias_database = hash:/etc/postfix/aliases alias_maps = hash:/etc/postfix/aliases append_dot_mydomain = no biff = no config_directory = /etc/postfix delay_warning_time = 4h disable_vrfy_command = yes inet_interfaces = all local_recipient_maps = mailbox_size_limit = 0 masquerade_domains = mail.example.com mail1.example.com masquerade_exceptions = root maximal_backoff_time = 8000s maximal_queue_lifetime = 7d minimal_backoff_time = 1000s mydestination = mynetworks = 127.0.0.0/8 [::ffff:127.0.0.0]/104 [::1]/128 mynetworks_style = host myorigin = example.com readme_directory = no recipient_delimiter = + relayhost = smtp_helo_timeout = 60s smtp_tls_session_cache_database = btree:${data_directory}/smtp_scache smtpd_banner = $myhostname SMTP $mail_name smtpd_client_restrictions = reject_rbl_client sbl.spamhaus.org, reject_rbl_client blackholes.easynet.nl, reject_rbl_client dnsbl.njabl.org smtpd_delay_reject = yes smtpd_hard_error_limit = 12 smtpd_helo_required = yes smtpd_helo_restrictions = permit_mynetworks, warn_if_reject reject_non_fqdn_hostname, reject_invalid_hostname, permit smtpd_recipient_limit = 16 smtpd_recipient_restrictions = reject_unauth_pipelining, permit_mynetworks, reject_non_fqdn_recipient, reject_unknown_recipient_domain, reject_unauth_destination, permit smtpd_data_restrictions = reject_unauth_pipelining smtpd_sender_restrictions = permit_mynetworks, warn_if_reject reject_non_fqdn_sender, reject_unknown_sender_domain, reject_unauth_pipelining, permit smtpd_soft_error_limit = 3 smtpd_tls_cert_file = /etc/ssl/certs/ssl-cert-snakeoil.pem smtpd_tls_key_file = /etc/ssl/private/ssl-cert-snakeoil.key smtpd_tls_session_cache_database = btree:${data_directory}/smtpd_scache smtpd_use_tls = yes unknown_local_recipient_reject_code = 450 virtual_alias_maps = mysql:/etc/postfix/mysql_alias.cf virtual_gid_maps = mysql:/etc/postfix/mysql_gid.cf virtual_mailbox_base = /var/spool/mail/virtual virtual_mailbox_domains = mysql:/etc/postfix/mysql_domains.cf virtual_mailbox_maps = mysql:/etc/postfix/mysql_mailbox.cf virtual_uid_maps = mysql:/etc/postfix/mysql_uid.cf

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• Squid on Linux Windows Pass through authentication

  - by beakersoft

  We are setting up a new proxy based on squid on an ubuntu server, and would like to have pass through authentication work for the Windows/Internet Explorer client. We have put the line into the squid.conf for squid_ldap_auth, but this prompts for a username and password in internet explorer. It does work ok once the user puts it in. Whats the 'best' (standard) way of using pass through authentication? Cheers Luke

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• linux shell, keep task alive for specified time

  - by liori

  Hello, I am looking for a tool to keep a task alive (restarting if necessary) for a specified amount of time (in seconds), and then kill it and stop. For example: keep_for 3600 rsync foo bar:faz should for try to synchronize a directory (restarting rsync in case of f.e. dropped connection), but explicitly kill rsync and stop respawning it after an hour. I tried to write a shell script for that, but it was surprisingly difficult to write, with lots of edge cases (like child process not getting killed, or shell escaping issues). So... maybe there already is a tool for that?

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• Linux servers vs Windows IIS sense of usage "free" solutions

  - by Rob

  I wonder what is the sense of using "free" open source solutions for serious webstie applications? Crawled and read many testing of servers performance and there is one conclusion: IIS seems to be the best choice for high load applicatiom. I mean cost effective. Especially this concers to Nginx PLUS and LiteSpeed Users where subscriptions paid for e.g. LoadBalacer and extra support cost a lot in fact. I'm asking then where it's "free" then or "cheap" in this case? Assuming even little higher cost of dedicated servers with Windows still seems like Windows looks cheaper. At it's basic setup Windows 2012 with IIS offer much more than std LAMP, or other NGINX config.... Maybe am I missing sth ? I mean only general case for someone who did not already started his app. I know exactly that the cheapest solution is the one someone is skilled. Has anyone done already such real costs calculation for example scenarios?

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• cannot send mail to postfix /w iptables linux proxy

  - by Juzzam

  I have two separate servers, both running Ubuntu 8.04. Server 1 has the real domain name of our site, let's refer to it as example.com. Server 2 is a mail server I have setup with postfix/courier. The hostname for this server is mail.example.com. I've setup iptables on Server 1 to forward all traffic on port 25 to Server 2. I used this script (except I changed the target ip address and the port from 80 to 25). When I send an email to [email protected] it works. However, when I try to send an email to [email protected] from gmail, I get this error: 550 550 #5.1.0 Address rejected [email protected] (state 14) /var/log/mail.log shows no new lines when this happens. What is strange is that it works with telnet from my local machine. For example: $ telnet example.com 25 220 VO13421.localdomain SMTP Postfix EHLO example.com 250-VO13421.localdomain 250-PIPELINING 250-SIZE 10240000 250-ETRN 250-STARTTLS 250-ENHANCEDSTATUSCODES 250-8BITMIME 250 DSN MAIL FROM: [email protected] 250 2.1.0 Ok RCPT TO: [email protected] 250 2.1.5 Ok data 354 Please start mail input. hello user... how have you been? . 250 Mail queued for delivery. quit 221 Closing connection. Good bye. /var/log/mail.log shows success (and the email goes to the maildr): Feb 24 09:47:36 VO13421 postfix/smtpd[2212]: connect from 81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] Feb 24 09:48:01 VO13421 postfix/smtpd[2212]: warning: restriction `smtpd_data_restrictions' after `permit' is ignored Feb 24 09:48:01 VO13421 postfix/smtpd[2212]: 65C68120321: client=81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] Feb 24 09:48:29 VO13421 postfix/smtpd[2212]: warning: restriction `smtpd_data_restrictions' after `permit' is ignored Feb 24 09:48:29 VO13421 postfix/smtpd[2212]: 6BDFA120321: client=81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] Feb 24 09:48:29 VO13421 postfix/cleanup[2216]: 6BDFA120321: message-id= Feb 24 09:48:29 VO13421 postfix/qmgr[2042]: 6BDFA120321: from=, size=395, nrcpt=1 (queue active) Feb 24 09:48:29 VO13421 postfix/virtual[2217]: 6BDFA120321: to=, relay=virtual, delay=0.28, delays=0.25/0.02/0/0.01, dsn=2.0.0, status=sent (delivered to maildir) Feb 24 09:48:29 VO13421 postfix/qmgr[2042]: 6BDFA120321: removed Feb 24 09:48:30 VO13421 postfix/smtpd[2212]: disconnect from 81.208.68.208.static.dnsptr.net[208.68.xxx.xxx] iptables -L -n -v --line on example.com yields the following. Anyone know an iptables command to see the port forwarding? Also, it seems to accept all traffic, that's probably bad right? ;] num pkts bytes target prot opt in out source destination 1 14041 1023K ACCEPT all -- * * 0.0.0.0/0 0.0.0.0/0 Chain FORWARD (policy ACCEPT 0 packets, 0 bytes) num pkts bytes target prot opt in out source destination 1 338 20722 ACCEPT all -- * * 0.0.0.0/0 0.0.0.0/0 Chain OUTPUT (policy ACCEPT 419K packets, 425M bytes) num pkts bytes target prot opt in out source destination 1 13711 2824K ACCEPT all -- * * 0.0.0.0/0 0.0.0.0/0 postconf -n results in: alias_database = hash:/etc/postfix/aliases alias_maps = hash:/etc/postfix/aliases append_dot_mydomain = no biff = no config_directory = /etc/postfix delay_warning_time = 4h disable_vrfy_command = yes inet_interfaces = all local_recipient_maps = mailbox_size_limit = 0 masquerade_domains = mail.example.com mail1.example.com masquerade_exceptions = root maximal_backoff_time = 8000s maximal_queue_lifetime = 7d minimal_backoff_time = 1000s mydestination = mynetworks = 127.0.0.0/8 [::ffff:127.0.0.0]/104 [::1]/128 mynetworks_style = host myorigin = example.com readme_directory = no recipient_delimiter = + relayhost = smtp_helo_timeout = 60s smtp_tls_session_cache_database = btree:${data_directory}/smtp_scache smtpd_banner = $myhostname SMTP $mail_name smtpd_client_restrictions = reject_rbl_client sbl.spamhaus.org, reject_rbl_client blackholes.easynet.nl, reject_rbl_client dnsbl.njabl.org smtpd_delay_reject = yes smtpd_hard_error_limit = 12 smtpd_helo_required = yes smtpd_helo_restrictions = permit_mynetworks, warn_if_reject reject_non_fqdn_hostname, reject_invalid_hostname, permit smtpd_recipient_limit = 16 smtpd_recipient_restrictions = reject_unauth_pipelining, permit_mynetworks, reject_non_fqdn_recipient, reject_unknown_recipient_domain, reject_unauth_destination, permit smtpd_data_restrictions = reject_unauth_pipelining smtpd_sender_restrictions = permit_mynetworks, warn_if_reject reject_non_fqdn_sender, reject_unknown_sender_domain, reject_unauth_pipelining, permit smtpd_soft_error_limit = 3 smtpd_tls_cert_file = /etc/ssl/certs/ssl-cert-snakeoil.pem smtpd_tls_key_file = /etc/ssl/private/ssl-cert-snakeoil.key smtpd_tls_session_cache_database = btree:${data_directory}/smtpd_scache smtpd_use_tls = yes unknown_local_recipient_reject_code = 450 virtual_alias_maps = mysql:/etc/postfix/mysql_alias.cf virtual_gid_maps = mysql:/etc/postfix/mysql_gid.cf virtual_mailbox_base = /var/spool/mail/virtual virtual_mailbox_domains = mysql:/etc/postfix/mysql_domains.cf virtual_mailbox_maps = mysql:/etc/postfix/mysql_mailbox.cf virtual_uid_maps = mysql:/etc/postfix/mysql_uid.cf

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• FTP script download from linux to windows

  - by user53864

  I'm using following FTP script on windows xp to download zip files from ubuntu cloud servers. A zip file is created every day on ubutnu servers and I will download it to windows via this ftp script. I run this script everyday manually as I have to edit the last line(mget /usr/backup_02-11-2010.Zip) of the script to match today's date. I want to edit this script so that it will download only today's zip file at the scheduled time without needing to edit it everyday, when scheduled. It's clear that date is appended to the zip files and is in the format dd-mm-yyyy. Need help... open server-ip-here username-here user-password-here lcd C:\Backup\files bin hash prompt mget /usr/backup_02-11-2010.zip

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• Consolidate multiple site files into single location

  - by seengee

  We have a custom PHP/MySQL CMS running on Linux/Apache thats rolled out to multiple sites (20+) on the same server. Each site uses exactly the same CMS files with a few files for each site being customised. The customised files for each site are: /library/mysql_connect.php /public_html/css/* /public_html/ftparea/* /public_html/images/* There's also a couple of other random files inside /public_html/includes/ that are unique to each site. Other than this each site on the server uses the exact same files. Each site sitting within /home/username/. There is obviously a massive amount of replication here as each time we want to deploy a system update we need to update to each user account. Given the common site files are all stored in SVN it would make far more sense if we were able to simply commit to SVN and deploy to a single location direct from there. Unfortunately, making a major architecture change at this stage could be problematic. In my mind the ideal scenario would mean creating an account like /home/commonfiles/ and each site using these common files unless an account specific file exists, for example a request is made to /home/user/public_html/index.php but as this file doesnt exist the request is then redirected to /home/commonfiles/public_html/index.php. I know that generally this approach is possible, similar to how Zend Framework (and probably others) redirect all requests that dont match a specific file to index.php. I'm just not sure about how exactly to go about implementing it and whether its actually advisable. Would really welcome any input/ideas people have got. Thanks.

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• program won't find math.h anymore

  - by 130490868091234

  After a long time, I downloaded a program I co-developed and tried to recompile it on my Ubuntu Linux 12.04, but it seems it does not find math.h anymore. This may be because something has changed recently in gcc, but I can't figure out if it's something wrong in src/Makefile.am or a missing dependency: Download from http://www.ub.edu/softevol/variscan/: tar xzf variscan-2.0.2.tar.gz cd variscan-2.0.2/ make distclean sh ./autogen.sh make I get: [...] gcc -DNDEBUG -O3 -W -Wall -ansi -pedantic -lm -o variscan variscan.o statistics.o common.o linefile.o memalloc.o dlist.o errabort.o dystring.o intExp.o kxTok.o pop.o window.o free.o output.o readphylip.o readaxt.o readmga.o readmaf.o readhapmap.o readxmfa.o readmav.o ran1.o swcolumn.o swnet.o swpoly.o swref.o statistics.o: In function `calculate_Fu_and_Li_D': statistics.c:(.text+0x497): undefined reference to `sqrt' statistics.o: In function `calculate_Fu_and_Li_F': statistics.c:(.text+0x569): undefined reference to `sqrt' statistics.o: In function `calculate_Fu_and_Li_D_star': statistics.c:(.text+0x63b): undefined reference to `sqrt' statistics.o: In function `calculate_Fu_and_Li_F_star': statistics.c:(.text+0x75c): undefined reference to `sqrt' statistics.o: In function `calculate_Tajima_D': statistics.c:(.text+0x85d): undefined reference to `sqrt' statistics.o:statistics.c:(.text+0xcb1): more undefined references to `sqrt' follow statistics.o: In function `calcRunMode21Stats': statistics.c:(.text+0xe02): undefined reference to `log' statistics.o: In function `correctedDivergence': statistics.c:(.text+0xe5a): undefined reference to `log' statistics.o: In function `calcRunMode22Stats': statistics.c:(.text+0x104a): undefined reference to `sqrt' statistics.o: In function `calculate_Fu_fs': statistics.c:(.text+0x11a8): undefined reference to `fabsl' statistics.c:(.text+0x11ca): undefined reference to `powl' statistics.c:(.text+0x11f2): undefined reference to `logl' statistics.o: In function `calculateStatistics': statistics.c:(.text+0x13f2): undefined reference to `log' collect2: ld returned 1 exit status make[1]: *** [variscan] Error 1 make[1]: Leaving directory `/home/avilella/variscan/latest/variscan-2.0.2/src' make: *** [all-recursive] Error 1 The libraries are there because this simple example works perfectly well: $ gcc test.c -o test -lm $ cat test.c #include <stdio.h> #include <math.h> int main(void) { double x = 0.5; double result = sqrt(x); printf("The hyperbolic cosine of %lf is %lf\n", x, result); return 0; } Any ideas?

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• 32/64 bit problems with Eclipse CDT on Ubuntu

  - by waffleShirt

  I have just recently started running Linux on my PC and I am trying to start learning OpenGL. I am using the latest version of Eclipse CDT as my IDE, and my system is Ubuntu 10.10, 64 bit version. The problem I am having is that whenever I try to run a build from within the IDE I get the error message "Launch Failed. Binary Not Found." Ive done a lot of looking around on the internet but I still cant solve the problem. I know for a fact that the binary is built, it can be run from a terminal window. According to posts I have seen the problem is that Eclipse tries to run a 32 bit binary, but GCC 4.4.5 defaults to 64 bit binaries on a 64 bit system. Ive seen a lot of information about using the -m32 flag in makefiles, but then I still get the following output in Eclipse: make all g++ -o HelloWorld2 main.o /usr/bin/ld: i386 architecture of input file `main.o' is incompatible with i386:x86-64 output /usr/bin/ld: final link failed: Invalid operation collect2: ld returned 1 exit status make: *** [HelloWorld2] Error 1 What I would like to know is how to either get Eclipse to launch the 64 bit binaries, or have Eclipse correctly compile 32 bit binaries.

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• Webserver sending corrupt or corrupting served files

  - by NotIan

  EDIT: Looks like the problem was a rootkit that corrupted a bunch of low level linux commands, including top, ps, ifconfig, netstat and others. The problem was resolved by taking all web files off the server and wiping it. A dedicated server we operate is having a strange issue. Files are not be sent complete or are showing up with garbage data. Example: http://sustainablefitness.com/images/banner_bootcamps.jpg To make matters more confusing this corruption does NOT happen when the files are served as https, (I would post a link, but I don't have enough rep points, just add an 's' after http in the link above.) When I throw load at the server, I get dozens of (swapd)s in top this is the only thing that really jumps out. I can't post images but ( imgur.com / ZArSq.png ) is a screenshot of top. I have tried a lot of stuff so far, I am willing to try anything that I can. A dedicated server we operate is having a strange issue. Files are not be sent complete or are showing up with garbage data. Example: http://sustainablefitness.com/images/banner_bootcamps.jpg To make matters more confusing this corruption does NOT happen when the files are served as https, (I would post a link, but I don't have enough rep points, just add an 's' after http in the link above.) When I throw load at the server, I get dozens of (swapd)s in top this is the only thing that really jumps out. I can't post images but ( imgur.com / ZArSq.png ) is a screenshot of top. I have tried a lot of stuff so far, I am willing to try anything that I can.

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• Component based web project directory layout with git and symlinks

  - by karlthorwald

  I am planning my directory structure for a linux/apache/php web project like this: Only www.example.com/webroot/ will be exposed in apache www.example.com/ webroot/ index.php comp1/ comp2/ component/ comp1/ comp1.class.php comp1.js comp2/ comp2.class.php comp2.css lib/ lib1/ lib1.class.php the component/ and lib/ directory will only be in the php path. To make the css and js files visible in the webroot directory I am planning to use symlinks. webroot/ index.php comp1/ comp1.js (symlinked) comp2/ comp2.css (symlinked) I tried following these principles: layout by components and libraries, not by file type and not by "public' or 'non public', index.php is an exception. This is for easier development. symlinking files that need to be public for the components and libs to a public location, but still mirroring the layout. So the component and library structure is also visible in the resulting html code in the links, which might help development. git usage should be safe and always work. it would be ok to follow some procedure to add a symlink to git, but after that checking them out or changing branches should be handled safely and clean How will git handle the symlinking of the single files correctly, is there something to consider? When it comes to images I will need to link directories, how to handle that with git? component/ comp3/ comp3.class.php img/ img1.jpg img2.jpg img3.jpg They should be linked here: webroot/ comp3/ img/ (symlinked ?) If using symlinks for that has disadvantages maybe I could move images to the webroot/ tree directly, which would break the first principle for the third (git practicability). So this is a git and symlink question. But I would be interested to hear comments about the php layout, maybe you want to use the comment function for this.

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• Available filesystems for Linux that are case-insensitive?

  - by David

  I have a client whose web application was written entirely in a windows environment and served from windows. Unfortunately there's way to many cases of get "file/At/Somelocation.php" where the file is actually something horrible like "File/at/SomeLocation.PHP". I really don't want to be forced to work in Windows but it will take weeks if not longer to fix all the casing issues. Am I SOL here?

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• Monitoring ports in Linux

  - by Alex

  How to find out what processes are listening on specific ports in Ubuntu?

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• Linux kernel startup problems: how to analyze?

  - by java.is.for.desktop

  Hello, everyone! After manually updating the kernel from 2.6.33 to 2.6.34 on my OpenSuse 11.2 Notebook, it stops after the message Loading drivers, configuring devices... This stop can be interrupted with Ctrl-C, but when the system enters runlevel 5, no partitions are mounted (but the root partition), many services fail to start, and other strange things are going on. No X11. NOTE: I manually updated the kernel many times before, it worked. Yes, I know, in case of NVidia, the driver has to be recompiled. The question is: How can I analyze the cause of the problem? Doing dmesg gives me soooo much output, I can't "map" it to the output which I see at startup. The output does not contain the string Loading drivers, configuring devices, or similar.

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• Run chromium-browser on Linux with fullscreen and application modes ON

  - by LukaszBachman

  Some time ago chromium-browser was supporting a so called "kiosk mode", which could start chromium in fullscreen and removed unnecessary titlebar and some other UI components. Right now it looks like it's no longer supported. After few updates the same script that I was using for launching kiosk mode is not behaving the same. I checked some sites and learned that recently they introduced a so called "application mode" (--app=http://mysite.com). All cool and neat, but application mode does no longer enforce fullscreen. How could I force chromium-browser to behave exactly as in previous kiosk mode?

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• create vmware virtual machine via command line on linux system

  - by tom smith

  evaluating/investigating vmware, and how you create a "virtual machine" using the command line for rhel/centos. basically, i want to be able to create a test virtual machine and then be able to run the VM on another system using the virtual player. so, i'm looking for pointers/articles/instructions that detail what i need (in terms of tools/apps) and the steps needed to accomplish this. i've seen a few articles/sites that discuss creating virtual machines, but they all involve using the GUI. thanks update:: while vmware is the company. there are different tools/apps provided to create a Virtual Machine. Basically, I want to do a test, to ultimately have a Virtual Machine/Image that can be run on a separate server using the vmplayer app I've seen docs that discuss using the GUI to create the VM, but haven't found any (yet) that discuss how to accomplish this using the command line approach. thanks...

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• Random-access archive for Unix use

  - by tylerl

  I'm looking for a good format for archiving entire file-systems of old Linux computers. TAR.GZ The tar.gz format is great for archiving files with UNIX-style attributes, but since the compression is applied across the entire archive, the design precludes random-access. Instead, if you want to access a file at the end of the archive, you have to start at the beginning and decompress the whole file (which could be several hundred GB) up to the point where you find the entry you're looking for. ZIP Conversely, one selling point of the ZIP format is that it stores an index of the archive: filenames are stored separately with pointers to the location within the archive were to find the data. If I want to extract a file at the end, I look up the position of that file by name, seek to the location, and extract the data. However, it doesn't store file attributes such as ownership, permissions, symbolic links, etc. Other options? I've tried using squashfs, but it's not really designed for this purpose. The file format is not consistent between versions, and building the archive takes a lot of time and space. What other options might suit this purpose better?

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• rsync osx to linux

  - by Nick

  I did a backup to a remote nfs folder with rsync, from a MAC to a Remote Debian. The final backup is 58GB less than the original. Rsync says that everything was OK, and nothing to update. Macintosh:/Volumes/Data1 root# du -sh Produccion/ 319G Produccion/ root@Disketera:/mnt/soho_storage/samba/shares# du -sh Produccion/ 260G Produccion/ can I trust in rsync? I'm using rsync -av --stats /Volumes/Data1/Produccion/ /mnt/red/ (/mnt/red is my samba mountpoint) Some differents folders root@Disketera:/mnt/soho_storage/samba/shares/Produccion/tiposok# du -sh * 0 IndoSanBol 0 IndoSans-Bold 0 IndoSans-Italic 0 IndoSans-Light 0 IndoSans-Regular 40K PalatinoLTStd-Black.otf 40K PalatinoLTStd-BlackItalic.otf 40K PalatinoLTStd-Bold.otf 44K PalatinoLTStd-BoldItalic.otf 44K PalatinoLTStd-Italic.otf 40K PalatinoLTStd-Light.otf 40K PalatinoLTStd-LightItalic.otf 40K PalatinoLTStd-Medium.otf 40K PalatinoLTStd-MediumItalic.otf 56K PalatinoLTStd-Roman.otf 12K TCL IndoSans_mac Macintosh:/Volumes/Data1/Produccion/tiposok root# du -sh * 36K IndoSanBol 40K IndoSans-Bold 36K IndoSans-Italic 36K IndoSans-Light 36K IndoSans-Regular 40K PalatinoLTStd-Black.otf 40K PalatinoLTStd-BlackItalic.otf 40K PalatinoLTStd-Bold.otf 44K PalatinoLTStd-BoldItalic.otf 44K PalatinoLTStd-Italic.otf 40K PalatinoLTStd-Light.otf 40K PalatinoLTStd-LightItalic.otf 40K PalatinoLTStd-Medium.otf 40K PalatinoLTStd-MediumItalic.otf 56K PalatinoLTStd-Roman.otf 160K TCL IndoSans_mac

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