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  • How can I save BioPerl sequence nested features in genbank or embl format?

    - by Ryan Thompson
    In BioPerl, a sequence object can have any number of features, and each of these can have subfeatures nested within them. For example, a feature may be a complete coding sequence of a gene, and its subfeatures might be individual exons that are concatenated to form the full coding sequence. However, when I use BioPerl to write a sequence object to a file in genbank or embl format, only the top-level features are written to the file, not the sub-features nested within the top-level features. How can I store my subfeatures in sequence files? Should I just convert all my subfeatures into top-level features, and then reconstruct the tree structure next time I read in the sequence?

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  • Dual slider control with custom skin

    - by Ryan French
    Hi All, I'm currently trying to create a page for users to select two points from a range, using a slide control. The first point in the range is when an alert will be sent to the user, the second point is a max limit. What I would like to do is have the bar colored green from the 0 point to the first slider point, then orange between the two sliders, and lastly red from the second slider up to the other end of the bar. Does anyone know of an easy was I can do this or of a slider control that can be skinned to do this?

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  • AutoIt Array Error

    - by Scott
    Func archiveDir($dir) ; Get all the files under the current dir $allOfDir = _FileListToArray($dir) Local $countDirs = 0 Local $countFiles = 0 $imax = UBound($allOfDir) For $i = 0 to $imax - 1 If StringInStr(FileGetAttrib($allOfDir[$i]),"D") Then $countDirs = $countDirs + 1 Else $countFiles = $countFiles + 1 EndIf Next Local $allDirs[$countDirs] Local $allFiles[$countFiles] The error text is : "Array variable subscript badly formatted." and comes on this line: Local $allDirs[$countDirs] Any ideas?

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  • Intercepting hyperlinks in an embedded Word document

    - by Ryan
    Hello, I'm working on an app which uses embedded Word documents. We have a feature which allows them to insert a small clickable image into the doc - when the user clicks on it, we want the app to open another window based on some data specified by the user when the image was added. What the application does now is: When the image is inserted, the app creates a hyperlink for it and the data is used as the link destination The user ctrl+clicks on the image and the Word document the WindowSelectionChange event The app handles the WindowSelectionChange event and goes to open the specified window This approach worked fine with previous versions, when we had the 11.0 / Word 2003 interop dll's. We upgraded to 12.0/Word 2007 for the upcoming release, and in many cases the event is not firing when I click on the image - sometimes it does, sometimes it doesn't, and I'm descending into the cargo-cult world trying to figure out why - sometimes saving and re-opening the document works, sometimes killing the Word process and starting a new one fixes (or breaks) the feature. My guess is there's something going wrong with the WinSelChg event, but I'm not sure what. The usual process we have for applying the event handler is: try //remove the old one if any { ((Document)myAXFramerControl.ActiveDocument).Application.WindowSelectionChange -= new ApplicationEvents4_WindowSelectionChangeEventHandler(WSC_eventhandlerfunction); } catch{} ((Document)myAXFramerControl.ActiveDocument).Application.WindowSelectionChange += new ApplicationEvents4_WindowSelectionChangeEventHandler(WSC_eventhandlerfunction); Sometimes one or both of these will throw exceptions - usually a NullReferenceException when removing the handler. Adding the handler sometimes throws the "com object that has been separated from its underlying rcw cannot be used" exception, which I don't understand at all - my impression was that this only occurs when you, say, store a reference to the Word application or document and try to use it later. As it stands the WSC event handler is frequently never run; while I'm happy to fiddle with the app until it works once I can't really expect the same of the users who have been happily using this feature for a while now. Any ideas?

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  • HTML checkbox field is being passed to PHP as checked even when it is not

    - by Ryan
    Hello all, First of all thanks in advance, this has been very frustrating and I'm hoping someone can see something I'm not, I am definitely no php expert. Well here' what is going on. I have a form where I have a checkbox for people to opt in to our newletter. The form element looks like this: <label for=newsletter accesskey=N class="checkbox">Signup for Cloverton's Newsletter</label> <input name="newsletter" type="checkbox" id="newsletter" value="Yes" style="width:20px;" /> That is then submitted to a php file with this code: if (isset($_POST['newsletter']) && $_POST['newsletter'] == 'Yes'){ echo "newletter yes"; $newsletter = 1; }else{ echo "newsletter no"; $newsletter = 0; } $newsletter is then inserted into a database field. The issue is that whether the box is checked or not it is being sent to php as true, so every entry is receiving the newsletter. Any help would be greatly appreciated! Thanks!

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  • Iterating Oracle collections of objects with out exploding them

    - by Scott Bailey
    I'm using Oracle object data types to represent a timespan or period. And I've got to do a bunch of operations that involve working with collections of periods. Iterating over collections in SQL is significantly faster than in PL/SQL. CREATE TYPE PERIOD AS OBJECT ( beginning DATE, ending DATE, ... some member functions...); CREATE TYPE PERIOD_TABLE AS TABLE OF PERIOD; -- sample usage SELECT <<period object>>.contains(period2) FROM TABLE(period_table1) t The problem is that the TABLE() function explodes the objects into scalar values, and I really need the objects instead. I could use the scalar values to recreate the objects but this would incur the overhead of re-instantiating the objects. And the period is designed to be subclassed so there would be additional difficulty trying to figure out what to initialize it as. Is there another way to do this that doesn't destroy my objects?

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  • WordPress Custom Theme Favicon in Dashboard Menu

    - by Scott B
    When you create a custom theme in WordPress, you can add a link to your theme options on the left menu in the WP dashboard. The default icon that's used next to your menu label is called generic.png and resides in the wp-admin/images directory. Anyone know how to tell WP to use my theme's custom favicon.png instead of the default?

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  • Resetting a PChar variable

    - by scott-thornton
    Hi, I don't know much about delphi win 32 programming, but I hope someone can answer my question. I get duplicate l_sGetUniqueIdBuffer saved into the database which I want to avoid. The l_sGetUniqueIdBuffer is actually different ( the value of l_sAuthorisationContent is xml, and I can see a different value generated by the call to getUniqueId) between rows. This problem is intermittant ( duplicates are rare...) There is only milliseconds difference between the update date between the rows. Given: ( unnesseary code cut out) l_sGetUniqueIdBuffer: PChar; FOutputBufferSize : integer; FOutputBufferSize := 1024; while( not dmAccomClaim.ADOQuClaimIdentification.Eof ) do begin // Get a unique id for the request l_sGetUniqueIdBuffer := AllocMem (FOutputBufferSize); l_returnCode := getUniqueId (m_APISessionId^, l_sGetUniqueIdBuffer, FOutputBufferSize); dmAccomClaim.ADOQuAddContent.Active := False; dmAccomClaim.ADOQuAddContent.Parameters.ParamByName('pContent').Value := (WideString(l_sAuthorisationContent)); dmAccomClaim.ADOQuAddContent.Parameters.ParamByName('pClaimId').Value := dmAccomClaim.ADOQuClaimIdentification.FieldByName('SB_CLAIM_ID').AsString; dmAccomClaim.ADOQuAddContent.Parameters.ParamByName('pUniqueId').Value := string(l_sGetUniqueIdBuffer); dmAccomClaim.ADOQuAddContent.ExecSQL; FreeMem( l_sAuthorisationContent, l_iAuthoriseContentSize ); FreeMem( l_sGetUniqueIdBuffer, FOutputBufferSize ); end; I guess i need to know, is the value in l_sGetUniqueIdBuffer being reset for every row??

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  • ASP.NET Canceling the Default Submit Button

    - by Ryan Smith
    I have an ASP.NET application where there's a few ASP.NET buttons and several plain HTML buttons. Anytime there's a textbox where a user hits enter, the ASP.NET button trys to submit the form. I know I can change the defaultButton, but I don't want there to be any default button. I just want it so when the user presses enter it doesn't do anything. I've tried setting defaultButton to blank, but that doesn't seem to work and I can't seem to find the answer anywhere on the web. What's the code to make this happen? Thanks.

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  • v8 is too slow for my purpose

    - by Scott
    I'm working on a music visualization plugin for libvisual. It's an AVS clone -- AVS being from Winamp. Right now I have a superscope plugin. This element has 4 scripts, and "point" is run at every pixel. You can imagine that it has to be rather fast. The original libvisual avs clone had a JIT compiler that was really fast, but it had some bugs and wasn't fully implemented, so I decided to try v8. Well, v8 is too slow running the compiled script at every pixel. Is there any other script engine that would be pretty fast for this purpose?

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  • How do I insert an input's value into a separate form?

    - by ryan
    I'm making a tool for my university that allows students to create a list of classes by doing the following: Searching by course title for their course via an autocomplete input field. Adding that course to a separate form that upon being submitted creates a course list. I am trying to link the autocomplete and the course list form with an 'add to course list' button that inserts a hidden input field into the course list form which can subsequently be submitted by a 'create course list' button. My question is this: How do I take the value of the autocomplete input and insert it into the course list form without using AJAX? So far I have something like the following: <%= text_field_with_auto_complete :course, :title, :size => 40 %> <%= link_to_function "Add to Course List" do |page| page.insert_html :top, :course_list, hidden_field(:courses, :course, {:value => "$('course_title').value"}) %> <% form_for(@course_list) do |f|%> <div id="course_list">Insert selected courses here.</div> <% end %>

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  • DataView.RowFilter an ISO8601

    - by Ryan
    I have a DataTable (instance named: TimeTable) whose DefaultView (instance named: TimeTableView) I am trying to use to filter based on a date. Column clock_in contains an ISO8601 formatted string. I would like to select all the rows in this DataTable/DefaultView between 2009-10-08T08:22:02Z and 2009-10-08T20:22:02Z. What would I have to filter on this criteria? I tried: TimeTableView = TimeTable.DefaultView; TimeTableView.RowFilter = "clock_in >= #2009-10-08T08:22:02Z# and #2009-10-08T20:22:02Z#"; This is not working for me. Am I operating on the wrong object or is my filter syntax wrong?

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  • How can I get latency info from Android's AudioTrack class?

    - by Ryan
    I've noticed that the C++ classes underlying the AudioTrack and AudioRecord APIs in Android both have a latency() method that is not exposed via JNI. As far as I can see, the latency() method in AudioRecord still does not take into account the hardware latency (they have a TODO comment for that), but the latency() method in AudioTrack does add in the hardware latency. I absolutely need to get this latency value from AudioTrack. Is there any possible way I can do this? I don't care what kind of crazy hack is needed as long as it doesn't require a rooted phone (the resulting code must still be packaged as an app on the market).

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  • EasyXDM passing data issue

    - by Jeff Ryan
    I'm using rpc with XDM, and I can send simple data back and forth easily between child and parent window. But it seems to be limited to simple strings and numbers. The demos on the site only use numbers. When I try to send a json ecoded string, I get a cross domain error. When I use cors, I can make ajax requests fine, but I can't display the child page in the iframe, because the data is returned and not rendered. My question is, how can I render an iframe, and pass complex data back and forth. Or maybe I am doing something wrong?

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  • How to setup IIS extranet site for unsecure access internally and secure (ssl) access from external

    - by Scott Travis
    I have an enterprise extranet application that is accessed using an internal DNS entry for the machine name by employees and via a domain name that has SSL configured externally. Currently remote sessions can use either the http or https address, but we want to turn off http access for external sessions while leaving it enabled for internal users. The site is written in ASP classic and running on IIS on Windows 2003 Server. Thank you for your time.

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  • Django ForeignKey created empty?

    - by Scott Willman
    This seems very basic and I must be missing something, but here goes anyways... With two models like so: class School(models.Model): name = models.CharField("Official School Name", max_length=128) address = models.TextField("Address of the School", max_length=256) mascot = models.CharField("Name of the School Mascot", max_length=128) class StudentProfile(models.Model): name = models.CharField(max_length=128) school = models.ForeignKey(School) If the student gets created before the school, how do I give 'school' a default empty value? Is it blank or null or what? Thanks!

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  • FormsAuthentication redirecting to login page when visiting root of website

    - by Ryan Lattimer
    I wanted to use FormsAuthentication to secure my static files as well on my site, so I followed the instructions located here http://learn.iis.net/page.aspx/244/how-to-take-advantage-of-the-iis7-integrated-pipeline/ under title "Enabling Forms Authentication for the Entire Application". Now though, when I try to visit the site by going directly to http://www.mysite.com I get redirected to http://www.mysite.com/Login.aspx?ReturnUrl=%2f instead of it using my DefaultDocument I have set. I can go to my default document by just visiting http://www.mysite.com/Home.aspx without any issues because it is set to allow anonymous access. Is there something I need to add into my web.config file to make iis7 allow anonymous access to the root? I tried adding with anonymous access but no such luck. Any help would be much appreciated. Both Home and the Login form allow anonymous. <location path="Home.aspx"> <system.web> <authorization> <allow users="*" /> </authorization> </system.web> </location> <location path="Login.aspx"> <system.web> <authorization> <allow users="*" /> </authorization> </system.web> </location> Login form is set as the loginUrl <authentication mode="Forms"> <forms protection="All" loginUrl="Login.aspx"> </forms> </authentication> Default document is set as Home.aspx <defaultDocument> <files> <add value="Home.aspx" /> </files> </defaultDocument> I have not removed any of the iis7 default documents. However, Home.aspx is first in the priority.

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  • Can an Aspect conditionally render parts of a JSP page ?

    - by Scott The Scot
    At present the jsp pages have normal authorize tags to conditionally render links and information etc. The website is on the intranet, and we're using Spring Security 2.0.4. Ive now got a business user who wants to allow all roles to access everything for the first few weeks, then gradually add the security back in as feedback is gathered from the business. Rather than go through every page, removing the authorize tags, only to have to put them back in, is is possible to configure these through an aspect, or is there any other way to externalize this into a config file ? I've found Spring's MethodSecurityInterceptor and the meta data tags, but these wouldn't give me the externalization. I've been on google for the last hour, and am now pretty sure this can't be done, but would love to find out I haven't been asking the right questions. Advice appreciated

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  • Directly call distutils' or setuptools' setup() function with command name/options, without parsing

    - by Ryan B. Lynch
    I'd like to call Python's distutils' or setuptools' setup() function in a slightly unconventional way, but I'm not sure whether distutils is meant for this kind of usage. As an example, let's say I currently have a 'setup.py' file, which looks like this (lifted verbatim from the distutils docs--the setuptools usage is almost identical): from distutils.core import setup setup(name='Distutils', version='1.0', description='Python Distribution Utilities', author='Greg Ward', author_email='[email protected]', url='http://www.python.org/sigs/distutils-sig/', packages=['distutils', 'distutils.command'], ) Normally, to build just the .spec file for an RPM of this module, I could run python setup.py bdist_rpm --spec-only, which parses the command line and calls the 'bdist_rpm' code to handle the RPM-specific stuff. The .spec file ends up in './dist'. How can I change my setup() invocation so that it runs the 'bdist_rpm' command with the '--spec-only' option, WITHOUT parsing command-line parameters? Can I pass the command name and options as parameters to setup()? Or can I manually construct a command line, and pass that as a parameter, instead? NOTE: I already know that I could call the script in a separate process, with an actual command line, using os.system() or the subprocess module or something similar. I'm trying to avoid using any kind of external command invocations. I'm looking specifically for a solution that runs setup() in the current interpreter. For background, I'm converting some release-management shell scripts into a single Python program. One of the tasks is running 'setup.py' to generate a .spec file for further pre-release testing. Running 'setup.py' as an external command, with its own command line options, seems like an awkward method, and it complicates the rest of the program. I feel like there may be a more Pythonic way.

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  • Does the chunk of the System.Collections.Concurrent.Partitioner need to be thread safe?

    - by Scott Chamberlain
    I am working with the Parallel libraries in .net 4 and I am creating a Partitioner and the example shown in the MSDN only has a chunk size of 1 (every time a new result is retrieved it hits the data source instead of the local cache. The version I am writing will pull 10000 SQL rows at a time then feed the rows from the cache until it is empty then pull another batch. Each partition in the Partitioner has its own chunk. I know every time I call to the IEnumerator in from the SQL data-source that needs to be thread safe but for use in a Parallel.ForEach do I need to make every call to the cache for the chunking thread safe?

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  • How do I conditionally format a WPF TextBlock?

    - by Scott Ferguson
    I have a WPF TextBlock bound to a string. If that string is empty, I want the TextBlock to display a warning message in another colour. This is easy to do in code, I was wondering if there was a elegant WPF pure XAML solution for it? I have investigated Style Triggers, but the syntax doesn't come naturally to me. Thanks!

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  • Creating a Large Matrix in ff

    - by Ryan Rosario
    I am trying to create a huge matrix in ff, and I know that ff is good for this sort of thing. But, there is a major problem. The dimensions of the matrix exceed .Machine$max_integer! I am running on a 64 bit machine, using 64bit R and 64bit ff. Is there any way to get around this problem? It's been suggested that R is using the MAXINT value from stdint.h. Is there any way to fix this without changing that file and possibly breaking build? > ffMatrix <- ff(vmode="boolean", dim=c(1e10,1e10)) Error in if (length < 0 || length > .Machine$integer.max) stop("length must be between 1 and .Machine$integer.max") : missing value where TRUE/FALSE needed In addition: Warning message: In ff(vmode = "boolean", dim = c(1e+10, 1e+10)) : NAs introduced by coercion > 1e+10 > .Machine$integer.max [1] TRUE

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  • Class to manage e-mail from iPhone

    - by Scott Pendleton
    I'm working on an iPhone app that offers the user the opportunity to send an e-mail in 3 different places in the app, and for 3 different purposes. Rather than put the same code for showing the e-mail composer in 3 different view controllers, shouldn't I develop a separate E-mail class, create an instance, and then set properties such as To, CC, BCC, Body, HTML_Or_Not, and so on? Also, if I create an instance of such a class, and it brings up the e-mail composer, is it OK to release the class even before the e-mail composer has left the screen?

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  • Wondering about a way to conserve memory in C# using List<> with structs

    - by Michael Ryan
    I'm not even sure how I should phrase this question. I'm passing some CustomStruct objects as parameters to a class method, and storing them in a List. What I'm wondering is if it's possible and more efficient to add multiple references to a particular instance of a CustomStruct if a equivalent instance it found. This is a dummy/example struct: public struct CustomStruct { readonly int _x; readonly int _y; readonly int _w; readonly int _h; readonly Enum _e; } Using the below method, you can pass one, two, or three CustomStruct objects as parameters. In the final method (that takes three parameters), it may be the case that the 3rd and possibly the 2nd will have the same value as the first. List<CustomStruct> _list; public void AddBackground(CustomStruct normal) { AddBackground(normal, normal, normal); } public void AddBackground(CustomStruct normal, CustomStruct hover) { AddBackground(normal, hover, hover); } public void AddBackground(CustomStruct normal, CustomStruct hover, CustomStruct active) { _list = new List<CustomStruct>(3); _list.Add(normal); _list.Add(hover); _list.Add(active); } As the method stands now, I believe it will create new instances of CustomStruct objects, and then adds a reference of each to the List. It is my understanding that if I instead check for equality between normal and hover and (if equal) insert normal again in place of hover, when the method completes, hover will lose all references and eventually be garbage collected, whereas normal will have two references in the List. The same could be done for active. That would be better, right? The CustomStruct is a ValueType, and therefore one instance would remain on the Stack, and the three List references would just point to it. The overall List size is determined not by the object Type is contains, but by its Capacity. By eliminating the "duplicate" CustomStuct objects, you allow them to be cleaned up. When the CustomStruct objects are passed to these methods, new instances are created each time. When the structs are added to the List, is another copy made? For example, if i pass just one CustomStruct, AddBackground(normal) creates a copy of the original variable, and then passes it three times to Addbackground(normal, hover, active). In this method, three copies are made of the original copy. When the three local variables are added to the List using Add(), are additional copies created inside Add(), and does that defeat the purpose of any equality checks as previously mentioned? Am I missing anything here?

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