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  • How to compare 2 lists and merge them in Python/MySQL?

    - by NJTechGuy
    I want to merge data. Following are my MySQL tables. I want to use Python to traverse though a list of both Lists (one with dupe = 'x' and other with null dupes). For instance : a b c d e f key dupe -------------------- 1 d c f k l 1 x 2 g h j 1 3 i h u u 2 4 u r t 2 x From the above sample table, the desired output is : a b c d e f key dupe -------------------- 2 g c h k j 1 3 i r h u u 2 What I have so far : import string, os, sys import MySQLdb from EncryptedFile import EncryptedFile enc = EncryptedFile( os.getenv("HOME") + '/.py-encrypted-file') user = enc.getValue("user") pw = enc.getValue("pw") db = MySQLdb.connect(host="127.0.0.1", user=user, passwd=pw,db=user) cursor = db.cursor() cursor2 = db.cursor() cursor.execute("select * from delThisTable where dupe is null") cursor2.execute("select * from delThisTable where dupe is not null") result = cursor.fetchall() result2 = cursor2.fetchall() for cursorFieldname in cursor.description: for cursorFieldname2 in cursor2.description: if cursorFieldname[0] == cursorFieldname2[0]: ### How do I compare the record with same key value and update the original row null field value with the non-null value from the duplicate? Please fill this void... cursor.close() cursor2.close() db.close() Thanks guys!

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  • the Memory problem about MySQL "SELECT *"

    - by Austin Huang
    Dear all: I'm new to MySQL, and I have a question about the memory. I have a 200mb table(MyISAM, 2,000,000 rows), and I try to load all of it to the memory. I use python(actually MySQLdb in python) with sql: SELECT * FROM table. However, from my linux "top" I saw this python process uses 50% of my memory(which is total 6GB) I'm curious about why it uses about 3GB memory only for a 200 mb table. Thanks in advance!

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  • Using MySQL in Pydev Eclipse

    - by Hossein
    Hi, I am trying to access a MySQL database with python through Pydev Eclipse. I have installed the necessary files to access MysQL from python and I can access the database only when I write code in Python IDLE environment and run it from command prompt. However I am not able to run my applications from Pydev. when I use this "import MysqlDB" i get an error, but in IDLE no errors and my code runs very smoothly. Does anyone know were the problem is? Thanks

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  • Where can I find a good tutorial for py2exe?

    - by Manzabar
    Can somebody point me at a good tutorial for py2exe? I've read over the official tutorial but it is rather light on details, compared to all the options one can use when building an executable out of a python script. For the record, my python script uses Python 2.5.2, wxPython/wxWidgets 2.8 and MySQLdb 1.2.2; so if you have specific tips for py2exe with those packages that would be much appreciated (and yes, I've seen the Py2EXE and wxPython page).

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  • How to make Django work with unsupported MySQL drivers such as gevent-mysql or Concurrence's MySQL d

    - by Continuation
    I'm interested in running Django on an async framework like Concurrence or gevent. Both frameworks come with its own async MySQL driver. Problem is Django only officially supports MySQLdb. What do I need to do to make Django work with the MySQL drivers that come with gevent or Concurrence? Is there a step-by-step guide somewhere that I can follow? Is this a major undertaking? Thanks.

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  • Django save_m2m() and excluded field

    - by jul
    hi, in a ModelForm I replaced a field by excluding it and adding a new one with the same name, as shown below in AddRestaurantForm. When saving the form with the code shown below, I get an error in form.save_m2m() ("Truncated incorrect DOUBLE value"), which seems to be due to the function to attempt to save the tag field, while it is excluded. Is the save_m2m() function supposed to save excluded fields? Is there anything wrong in my code? Thanks Jul (...) new_restaurant = form.save(commit=False) new_restaurant.city = city new_restaurant.save() tags = form.cleaned_data['tag'] if(tags!=''): tags=tags.split(',') for t in tags: tag, created = Tag.objects.get_or_create(name = t.strip()) tag.save() new_restaurant.tag.add(tag) new_restaurant.save() form.save_m2m() models.py class Tag(models.Model): name = models.CharField(max_length=100, unique=True) class Restaurant(models.Model): name = models.CharField(max_length=50) city=models.ForeignKey(City) category=models.ManyToManyField(Category) tag=models.ManyToManyField(Tag, blank=True, null=True) forms.py class AddRestaurantForm(ModelForm): name = forms.CharField(widget=forms.TextInput(attrs=classtext)) city = forms.CharField(widget=forms.TextInput(attrs=classtext), max_length=100) tag = forms.CharField(widget=forms.TextInput(attrs=classtext), required=False) class Meta: model = Restaurant exclude = ('city','tag') Traceback: File "/var/lib/python-support/python2.5/django/core/handlers/base.py" in get_response 92. response = callback(request, *callback_args, **callback_kwargs) File "/home/jul/atable/../atable/resto/views.py" in addRestaurant 498. form.save_m2m() File "/var/lib/python-support/python2.5/django/forms/models.py" in save_m2m 75. f.save_form_data(instance, cleaned_data[f.name]) File "/var/lib/python-support/python2.5/django/db/models/fields/ related.py" in save_form_data 967. setattr(instance, self.attname, data) File "/var/lib/python-support/python2.5/django/db/models/fields/ related.py" in set 627. manager.add(*value) File "/var/lib/python-support/python2.5/django/db/models/fields/ related.py" in add 430. self._add_items(self.source_col_name, self.target_col_name, *objs) File "/var/lib/python-support/python2.5/django/db/models/fields/ related.py" in _add_items 497. [self._pk_val] + list(new_ids)) File "/var/lib/python-support/python2.5/django/db/backends/util.py" in execute 19. return self.cursor.execute(sql, params) File "/var/lib/python-support/python2.5/django/db/backends/mysql/ base.py" in execute 84. return self.cursor.execute(query, args) File "/var/lib/python-support/python2.5/MySQLdb/cursors.py" in execute 168. if not self._defer_warnings: self._warning_check() File "/var/lib/python-support/python2.5/MySQLdb/cursors.py" in _warning_check 82. warn(w[-1], self.Warning, 3) File "/usr/lib/python2.5/warnings.py" in warn 62. globals) File "/usr/lib/python2.5/warnings.py" in warn_explicit 102. raise message Exception Type: Warning at /restaurant/add/ Exception Value: Truncated incorrect DOUBLE value: 'a'

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  • Configure FastCGI for Python

    - by Rob
    I have nginx running on a VM and I want to run a Trac site. I need to run a python FastCGI server, but I cannot tell which is the server to use. I have found the following: <a href="http://redmine.lighttpd.net/projects/spawn-fcgi">Lighttpd spawn-fcgi</a> But this seems to require that you compile lighttpd just to get the fcgi server, which is weird. <a href="http://svn.saddi.com/py-lib/trunk/fcgi.py">fcgi.py</a> But this one seems to be depreciated. At the very least it is poorly documented. <a href="http://trac.saddi.com/flup">flup</a> This one comes with dependencies on ubuntu (python-cheetah{a} python-mysqldb{a} python-webpy{a}) that seem unnecessary. Also poorly documented. Are their any recent guides for setting this up. Trac's own FastCGI setup page seems to miss some steps.

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  • my linux problems and solutions [closed]

    - by Delirium tremens
    I read somewhere in StackOverflow or StackOverflow Meta that if I had a problem, then solved it myself, I can share the problem and solution with you. How do I? in Linux: remove unneeded packages using apt-get play spc and psf update the system using apt-get in Mint: install lamp install and configure xdebug enable xdebug for cakephp install bazaar colo rename a repository directory when bazaar explorer fails init a repository when bazaar explorer fails use ssh key with launchpad uninstall firefox 3 when synaptic fails install minefield make pearltrees load when flash fails edit clojure documents install compojure create a new compojure project in Kubuntu enable phpmyadmin after installing lamp stop MySQLdb module error in webpy in Ubuntu stop the mouse pointer from disappearing fix the color stop sync read-only filesystem error stop download prompt instead of site enable phpmyadmin after installing lamp enable mod_rewrite after installing lamp

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  • How to build 64-bit Python on OS X 10.6 -- ONLY 64 bit, no Universal nonsense

    - by ssteiner
    I just want to build this on my development machine -- the binary install from Python.org is still 32 bits and installing extensions (MySQLdb, for example) is driving me nuts with trying to figure out the proper flags for each and every extension. Clarification: I did NOT replace the system Python, I just installed the Python.org binary into its normal place at /Library/..., not /System/Library/.... Everything else seems to build 64 bit by default, and the default Python 2.6.1 was 64 bit (before I replaced it with the Python.org build figuring it was a direct replacement)` I just want a 64 bit only build that will run on my one machine without any cruft. Does anyone have a simple answer? Thanks much, [email protected]

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  • Migrating from CPython to Jython

    - by itsadok
    I'm considering moving my code (around 30K LOC) from CPython to Jython, so that I could have better integration with my java code. Is there a checklist or a guide I should look at, to help my with the migration? Does anyone have experience with doing something similar? From reading the Jython site, most of the problems seem too obscure to bother me. I did notice that: thread safety is an issue Unicode support seems to be quite different, which may be a problem for me mysqldb doesn't work and needs to be replaced with zxJDBC Anything else? Related question: What are some strategies to write python code that works in CPython, Jython and IronPython

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  • Django ImageField validation & PIL

    - by Zayatzz
    Hello On sunday, I had problems with python modules, when I installed stackless python. Now I have compiled and installed : setuptools & python-mysqldb and i got my django project up and running again. (i also reinstalled django-1.1), Then I compiled and installed, jpeg, freetype2 and PIL. I also started using mod_wsgi instead of mod_python. But when uploading imagefield in form I get validationerror: Upload a valid image. The file you uploaded was either not an image or a corrupted image. Searchmonkey shows that it comes from field.py imagefield validation. before raising this error it imports Image from PIL, opens file and verfies it. I tried importing PIL from python prompt manually - it worked just fine. Same with Image.open and Image.verify. So what could be causing this problem? Alan

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  • Error 2006: "MySQL server has gone away" using Python, Bottle Microframework and Apache

    - by Jamie
    After accessing my web app using: - Python 2.7 - the Bottle micro framework v. 0.10.6 - Apache 2.2.22 - mod_wsgi - on Ubuntu Server 12.04 64bit; I'm receiving this error after several hours: OperationalError: (2006, 'MySQL server has gone away') I'm using MySQL - the native one included in Python. It usually happens when I don't access the server. I've tried closing all the connections, which I do, using this: cursor.close() db.close() where db is the standard MySQLdb.Connection() call. The my.cnf file looks something like this: key_buffer = 16M max_allowed_packet = 128M thread_stack = 192K thread_cache_size = 8 # This replaces the startup script and checks MyISAM tables if needed # the first time they are touched myisam-recover = BACKUP #max_connections = 100 #table_cache = 64 #thread_concurrency = 10 It is the default configuration file except max_allowed_packet is 128M instead of 16M. The queries to the database are quite simple, at most they retrieve approximately 100 records. Can anyone help me fix this? One idea I did have was use try/except but I'm not sure if that would actually work. Thanks in advance, Jamie

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  • nesting classes in php

    - by Honey
    here is my sample class to why i want to nest. include("class.db.php"); class Cart { function getProducts() { //this is how i do it now. //enter code here`but i dont want to redeclare for every method in this class. //how can i declare it in one location to be able to use the same variable in every method? $db = new mysqlDB; $query = $db->query("select something from a table"); return $query } }

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  • SQLAlchemy custom sorting algorithms when using SQL indexes

    - by David M
    Is it possible to write custom collation functions with indexes in SQLAlchemy? SQLite for example allows specifying the sorting function at a C level as sqlite3_create_collation(). An implementation of some of the Unicode collation algorithm has been provided by James Tauber here, which for example sorts all the "a"'s close together whether they have accents on them or not. Other examples of why this might be useful is for different alphabet orders (languages other than English) and sorting numeric values (sorting 10 after 9 rather than codepoint order.) Is this possible in SQLAlchemy? If not, is it supported by the pysqlite3 or MySQLdb modules, or for any other SQL database modules supported by python for that matter? Any information would be greatly appreciated.

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  • (2006, 'MySQL server has gone away') in WSGI django

    - by Stefano Borini
    I have a MySQL gone away with Django under WSGI. I found entries for this problem on stackoverflow, but nothing with Django specifically. Google does not help, except for workarounds (like polling the website every once in a while, or increasing the database timeout). Nothing definitive. Technically, Django and/or MySQLdb (I'm using the latest 1.2.3c1) should attempt a reconnect if the server hanged the connection, but this does not happen. How can I solve this issue without workarounds ?

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  • Issue with mysql backup in cron

    - by Aaron
    I'm just trying to perform a mysqldump and have it scheduled. I'm using RHEL 5 and have added it to the crontab as shown below: 22 13 * * * root mysqldump --user=root --password=12345 mysqldb /var/backups/mysqldbdate +%d%m.sql The .sql file never ended up in the backups folder. I even attempted to run this command line and it worked fine which tells me its something to do with the cron. Furthermore, I added a simple comand like "ls" and the output to the same directory and it worked fine. Any ideas? Thanks, Aaron

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  • Python:Comparing Two Dictionaries

    - by saun jean
    The first Dict is fixed.This Dict will remain as it is List of Countries with there Short Names. firstDict={'ERITREA': 'ER', 'LAOS': 'LA', 'PORTUGAL': 'PT', "D'IVOIRE": 'CI', 'MONTENEGRO': 'ME', 'NEW CALEDONIA': 'NC', 'SVALBARD AND JAN MAYEN': 'SJ', 'BAHAMAS': 'BS', 'TOGO': 'TG', 'CROATIA': 'HR', 'LUXEMBOURG': 'LU', 'GHANA': 'GH'} However This Tuple result has multiple Dict inside it.This is the format in which MySQLdb returns result: result =({'count': 1L, 'country': 'Eritrea'}, {'count': 1L, 'country': 'Togo'}, {'count': 1L, 'country': 'Sierra Leone'}, {'count': 3L, 'country': 'Bahamas'}, {'count': 1L, 'country': 'Ghana'}) Now i want to compare these both results With COUNTRY Names and If 'Country' in Result is present in firstDict then put the value.else put the 0 The result desired is: mainRes={'ER':1,'TG':1,'BS':3,'GH':0,'LU':0}

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  • Sharing a database connection with included classes in a Sinatra application

    - by imightbeinatree
    I'm converting a part of a rails application to its own sinatra application. It has some beefy work to do and rather than have a million helps in app.rb, I've separated some of it out into classes. Without access to rails I'm rewriting finder several methods and needing access to the database inside of my class. What's the best way to share a database connection between your application and a class? Or would you recommend pushing all database work into its own class and only having the connection established there? Here is what I have in in app.rb require 'lib/myclass' configure :production do MysqlDB = Sequel.connect('mysql://user:password@host:port/db_name') end I want to access it in lib/myclass.rb class Myclass def self.find_by_domain_and_stub(domain, stub) # want to do a query here end end I've tried several things but nothing that seems to work well enough to even include as an example.

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  • How to get line count from variable (from MYSQL query)?

    - by Mint
    My problematic code: testMYSQL=`mysql -u $mysqlUser -p$mysqlPass -h $mysqlHost --skip-column-names --batch -D $mysqlDB -e "SELECT $select FROM $mysqlTable WHERE nameTXT='test';"` $testMYSQL now contains: test test test Then I do: TEST=$(echo $testMYSQL | wc -l) echo "$TEST" I would of thought that would work, but it doesn't, it returns 1 But if I put this into $testMYSQL: "test\ntest\ntest" it will say 3… Whats going on here? does MYSQL not use new lines? PS, I know I can use a for loop to loop though the lines then count up the lines that way, but I was hoping for a simpler solution like wc

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  • fail2ban regex working but no action being taken

    - by fpghost
    I have the following snippet of fail2ban configuration on Ubuntu 13.10 server: #jail.conf [apache-getphp] enabled = true port = http,https filter = apache-getphp action = iptables-multiport[name=apache-getphp, port="http,https", protocol=tcp] mail-whois[name=apache-getphp, dest=root] logpath = /srv/apache/log/access.log maxretry = 1 #filter.d/apache-getphp.conf [Definition] failregex = ^<HOST> - - (?:\[[^]]*\] )+\"(GET|POST) /(?i)(PMA|phptest|phpmyadmin|myadmin|mysql|mysqladmin|sqladmin|mypma|admin|xampp|mysqldb|mydb|db|pmadb|phpmyadmin1|phpmyadmin2|cgi-bin) ignoreregex = I know the regex is good, because if I run the test command on my access.log: fail2ban-regex /srv/apache/log/access.log /etc/fail2ban/filter.d/apache-getphp.conf I get a SUCCESS result with multiple hits, and in my log I see entries like 187.192.89.147 - - [13/Apr/2014:11:36:03 +0100] "GET /phpTest/zologize/axa.php HTTP/1.1" 301 585 "-" "-" 187.192.89.147 - - [13/Apr/2014:11:36:03 +0100] "GET /phpMyAdmin/scripts/setup.php HTTP/1.1" 301 593 "-" "-" Secondly I know email is configured correctly, as each time I service fail2ban restart I get an email for each of the filters stopping/starting. However despite all this no action seems to be taken when one of these requests comes in. No email with whois, and no entries in iptables. What possibly could be preventing fail2ban from taking action? (everything looks in order in fail2ban-client -d and I can see the chains have loaded with iptables -L)

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  • Web application architecture, and application servers?

    - by seanieb
    Hi, I'm building a web application, and I need to use an architecture that allows me to run it on two servers. The application scrapes information from other sites periodically, and on input from the end user. To do this I'm using Php+curl to scrape the information, Php or python to parse it and store the results in a MySQLDB. Then I will use Python to run some algorithms on the data, this will happen both periodically and on input from the end user. I'm going to cache some of the results in the MySQL DB and sometimes if it is specific to the user, skip storing the data and serve it to the user. I'm think of using Php for the website front end on a separate web server, running the Php spider, MySQL DB and python on another server. As you can see I'm fairly clueless. I'm familiar with using Php, MySQL and the basics of Python, but bringing this all together using something more complex than a cron job is new to me. How do go about implementing this? What frame work(s) should I use? Is MVC a good architecture for this? (I'm new to MVC, architectures etc.) Is Cakephp a good solution? If so will I be able to control and monitor the Python code using it?

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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