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• How to declare a vector or array of reducer objects in Cilk++?

  - by Jin

  Hi All, I had a problem when I am using Cilk++, an extension to C++ for parallel computing. I found that I can't declare a vector of reducer objects: typedef cilk::reducer_opadd<int> T_reducer; vector<T_reducer> bitmiss_vec; for (int i = 0; i < 24; ++i) { T_reducer r; bitmiss_vec.push_back(r); } However, when I compile the code with Cilk++, it complains at the push_back() line: cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Tp*, const _Tp&) [with _Tp = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:601: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/ext/new_allocator.h:107: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:252: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:256: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In static member function ‘static _BI2 std::__copy_backward<_BoolType, std::random_access_iterator_tag>::__copy_b(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool _BoolType = false]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:465: instantiated from ‘_BI2 std::__copy_backward_aux(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:474: instantiated from ‘static _BI2 std::__copy_backward_normal<<anonymous>, <anonymous> >::__copy_b_n(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool <anonymous> = false, bool <anonymous> = false]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:540: instantiated from ‘_BI2 std::copy_backward(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:253: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:433: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In function ‘void std::_Construct(_T1*, const _T2&) [with _T1 = cilk::reducer_opadd<int>, _T2 = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:87: instantiated from ‘_ForwardIterator std::__uninitialized_copy_aux(_InputIterator, _InputIterator, _ForwardIterator, std::__false_type) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:114: instantiated from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:254: instantiated from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*, _Tp = cilk::reducer_opadd<int>]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:275: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_construct.h:81: error: within this context make: *** [geneAttack] Error 1 jinchen@galactica:~/workspace/biometrics/genAttack$ make cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack geneAttack.cilk: In function ‘int cilk cilk_main(int, char**)’: geneAttack.cilk:670: error: expected primary-expression before ‘,’ token geneAttack.cilk:670: error: expected primary-expression before ‘}’ token geneAttack.cilk:674: error: ‘bitmiss_vec’ was not declared in this scope make: *** [geneAttack] Error 1 The Cilk++ manule says it supports array/vector of reducers, although there are performance issues to consider: "If you create a large number of reducers (for example, an array or vector of reducers) you must be aware that there is an overhead at steal and reduce that is proportional to the number of reducers in the program. " Anyone knows what is going on? How should I declare/use vector of reducers? Thank you

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• segfault during __cxa_allocate_exception in SWIG wrapped library

  - by lefticus

  While developing a SWIG wrapped C++ library for Ruby, we came across an unexplained crash during exception handling inside the C++ code. I'm not sure of the specific circumstances to recreate the issue, but it happened first during a call to std::uncaught_exception, then after a some code changes, moved to __cxa_allocate_exception during exception construction. Neither GDB nor valgrind provided any insight into the cause of the crash. I've found several references to similar problems, including: http://wiki.fifengine.de/Segfault_in_cxa_allocate_exception http://forums.fifengine.de/index.php?topic=30.0 http://code.google.com/p/osgswig/issues/detail?id=17 https://bugs.launchpad.net/ubuntu/+source/libavg/+bug/241808 The overriding theme seems to be a combination of circumstances: A C application is linked to more than one C++ library More than one version of libstdc++ was used during compilation Generally the second version of C++ used comes from a binary-only implementation of libGL The problem does not occur when linking your library with a C++ application, only with a C application The "solution" is to explicitly link your library with libstdc++ and possibly also with libGL, forcing the order of linking. After trying many combinations with my code, the only solution that I found that works is the LD_PRELOAD="libGL.so libstdc++.so.6" ruby scriptname option. That is, none of the compile-time linking solutions made any difference. My understanding of the issue is that the C++ runtime is not being properly initialized. By forcing the order of linking you bootstrap the initialization process and it works. The problem occurs only with C applications calling C++ libraries because the C application is not itself linking to libstdc++ and is not initializing the C++ runtime. Because using SWIG (or boost::python) is a common way of calling a C++ library from a C application, that is why SWIG often comes up when researching the problem. Is anyone out there able to give more insight into this problem? Is there an actual solution or do only workarounds exist? Thanks.

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• Reverse rendering of Urdu fonts

  - by Syed Muhammad Umair

  I am working on a project that is based on Urdu language in Ubuntu platform. I'm using Python language and have almost achieved my task. The problem is that, the Urdu text is rendered in reverse order. For example, consider the word ??? (which means work) consisting of the three letters: ? , ? , and ? The output is rendered in reverse order as ??? consisting of the three letters: ?, ?, and ? When copying this text to Open Office or opening the generated XML file in Firefox, the generated result is absolutely desired. I Am using Python 2.6 IDLE, its working perfect with Windows platform, which clearly shows its not the problem of IDLE. Am working on TKINTER GUI library. How can this problem be solved?

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• Customizing Router Firmware

  - by beakersoft

  Hi, i've got a netgear DG834 router, and i want to have a go at hacking the firmware on it to try and add a Wake on Lan option. Netgear let you download the source and the tools to build an image, but i'm not sure where to start. I've never programmed on a unix platform before, and never done any firmware hacking, just wondering if anyone knows any good resources i can look through Ta

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• increasing amazon root volume size

  - by OCD

  I have a default amazon ec2 instance with 8GB root volume size. I am running out of space. I have: Detach the current EBS volume in AWS Management Console (Web). Create snapshot of this volume. Created a new Volume with 50G space with my snapshot. Attach the new volume back to the instance to /dev/sda1 However, when I reconnect to the account with: > df -h I can see from the management console that my new Filesystem 1K-blocks Used Available Use% Mounted on /dev/xvda1 8256952 8173624 0 100% / tmpfs 308508 40 308468 1% /dev/shm It's still not using my new volume's size, how to make this work?

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• How can I find the places of system calls of my program?

  - by Lucky Man

  From strace manual: -i Print the instruction pointer at the time of the system call. I straced my programm: strace -i prog As a result I got a lot of system calls. One of them: [000da49c] open("./rabbit.o", O_RDONLY) = 3 But disassembled instruction at this address of prog doesn't call any syscall (hte editor): da49c ! mov r7, ip What is wrong? How can I find the places of system calls of my program? P.S. Architecture of my device doesn't support GDB-command catch syscall.

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• Ajax based progress bar

  - by Punit

  I am developing a progress bar using Ajax. My client side code is working fine, but I have issue at server side. I am using C based CGI. if(i == inc && pb_inc<=100) { fptr = fopen("progress_bar.txt", "w"); fprintf(fptr,"%d", j); fclose(fptr); pb_inc++; } basically I am increasing progress bar after certain number of bytes. What I see here is that the CGI doesn't let display any data to text file until it has sent all the data to file one by one. i have referred to http://www.redips.net/javascript/ajax-progress-bar/ Any idea whats happening here?

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• UML or design tools for websites

  - by Malfist

  What is a good tool to design the implementation of websites? I typically use UMl to design applications, but I feel that does not apply well to websites, specifically the heavy emphasis on UI that websites require. What would be a good tool to use to plan a webpage?

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• Query size of block device file in Python

  - by ??O?????

  Hello. I have a Python script that reads a file (typically from optical media) marking the unreadable sectors, to allow a re-attempt to read said unreadable sectors on a different optical reader. I discovered that my script does not work with block devices (e.g. /dev/sr0), in order to create a copy of the contained ISO9660/UDF filesystem, because os.stat().st_size is zero. The algorithm currently needs to know the filesize in advance; I can change that, but the issue (of knowing the block device size) remains, and it's not answered here, so I open this question. I am aware of the following two related SO questions: Determine the size of a block device (/proc/partitions, ioctl through ctypes) how to check file size in python? (about non-special files) Therefore, I'm asking: in Python, how can I get the file size of a block device file?

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• How to resume CUPS printer from command line

  - by stach81

  Hello I have printer in CUPS that due driver problems (hp 1010) form time to time goes into pause. I would like to write a shell script that will be once per hour resuming printer in cups. But I have no idea after googling for couple of minutes how to resume printer from shell command line. Regards Stan

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• What is the effect of running an application with "Unlimited Stack" size

  - by NSA

  Hello All, I have inherited some code that I need to maintain that can be less than stable at times. The previous people are no longer available to query as to why they ran the application in an environment with unlimited stack set, I am curious what the effects of this could be? The application seems to have some unpredictable memory bugs that we cannot find and running the application under valgrind is not an option because it slows the application down so much that we cannot actually run it. So any thoughts on what the effects of this might be are appreciated. Thank you.

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• Regex for capturing number in brackets

  - by neversaint

  I have a lines like this NF419andZNF773 (e=10^-92,). ZNF571 (e=2 10^-14,) What's the regex for extracting the results above so that it gives NF419andZNF773 - 10^-92 ZNF571 - 2 10^-14 I tried this but fail. $line =~ /(\w+)\s\(e=\s(.*),\)/; print "$1 - $2\n";

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• MySQL - ERROR 1045 - Access denied

  - by Abs

  In some way I have managed to get this error when I try to access into MySQL via the command line: [root@localhost ~]# mysql -u root -p Enter password: ERROR 1045 (28000): Access denied for user 'root'@'localhost' (using password: YES) I have tried resetting the password without any luck using this HowTo. I have uninstalled mysql completley and reinstalled but I still get asked for a password. I have no idea why this is the case! Can someone please help me get a default install of MySQL. Environment Fedora Core 10, Full Root Access, Apache and PHP installed Thank you for any help!! EDIT To all those that would like to save themselves a few hours of "blood coughing" - when you uninstall MySQl completely delete everything that is left behind. If you don't do this, it will never be a FRESH install.

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• Is this how I do a crontab? Just put it in the file?

  - by alex

  crontab -e Then, paste it in? 5 * * * * python /home/alex/scanTags.py

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• how to create a window in c

  - by astha goyal

  hello i want to create a window,for that i know i hve to use gtk+ toolkit bt how to use it???

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• Problem with Ruby script output being stored into a file

  - by nickf

  I have a Ruby script that outputs a heap of text. As an example: puts "line 1" puts "line 2" puts "line 3" # etc... (obviously, this isn't how my script works..) There's not a lot of data - perhaps about 8kb of character data in total. When I run the script on the command line, it works as expected: $ ./my-script.rb line 1 line 2 line 3 But, when I push it into a file, the output is truncated at exactly 4096 bytes: $ ./my-script.rb > output.txt What would cause it to stop at 4kb?

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• PIL's Image.show() brings up *two* different viewers

  - by DarenW

  When toying with images in the python shell, I use image.show(), where image is an instance of Image. Long ago nothing happened, but after defining a symlink to mirage named "xv", I was happy. The last few days, show() will bring up both ImageMagick's display and also Mirage. It's not clear where show() gets information on what to run. Documentation wasn't helpful. How to make it behave and bring up only what it thinks is xv?

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• vim: highlight bash scripts?

  - by ajsie

  my vim editor auto highlights php files, html files and so on. but when i type: vim scriptname and inside it write a bash script, it doesnt highlight it. how come?

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• compile with -ansi -pedantic -Wall switches automatically with gcc

  - by Jef Ty

  We are required to compile C source codes using gcc in this manner: gcc -ansi -pedantic -Wall program.c I'm wondering how can I 'automate' this so when I enter: gcc program.c It will automatically compile with the 3 switches. Is this possible?

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• Inode to device information

  - by Methos

  I have 3 questions: I want to figure out if a file belongs to a USB device given the file inode. By looking in the latest kernel sources (2.6.33) on LXR, I think one can find that information by following pointers as follows: inode-super_block-block_device-backing_dev_info-device-device_driver(or device_type). However, the kernel that I am working with - 2.6.22.14 - does not have struct device pointer in the backing_dev_info object. So how can I figure out to which device does a file belong to from just the inode? I see that each of the inode, super_block and block_device contain an object of type 'dev_t'. But even after searching a lot, I could not find out how to convert 'dev_t' into struct device *. Is there any way to get that infomation? I tried to print device major and minor numbers using imajor(inode) and iminor(inode). However, for every file - belonging to hdd or usb - it always prints major and minor number as zero. Why would that be happening? I searched online for USB major numbers and I found out that major number for a USB is 180. However, on multiple machines, it showed me the major number associated with the USB dev as 253. $ ls -ltr /dev/usb* crw-rw---- 1 root root 253, 4 2010-04-13 17:20 /dev/usbmon4 crw-rw---- 1 root root 253, 3 2010-04-13 17:20 /dev/usbmon3 crw-rw---- 1 root root 253, 8 2010-04-13 17:20 /dev/usbmon8 crw-rw---- 1 root root 253, 5 2010-04-13 17:20 /dev/usbmon5 crw-rw---- 1 root root 253, 1 2010-04-13 17:20 /dev/usbmon1 crw-rw---- 1 root root 253, 7 2010-04-13 17:20 /dev/usbmon7 Why is that so?

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• how to compile a program with gtkmozembed.h

  - by ganapati hegde

  Hi, i have written a program under ubuntu, in which i include gtkmozembed.h. I am facing a problem in compiling the program.Below is the simplest form of a program which uses gtkmozembed. #include <gtk/gtk.h> #include <stdio.h> #include <gtkmozembed.h> int main(){ GtkWidget *mozEmbed; mozEmbed = gtk_moz_embed_new(); return 0; } Eventhough, the above program is doing nothing, compiling that program is a lot for me... I am trying to comile the above program like below gcc `pkg-config --libs --cflags gtk+-2.0` test.c -o test and it is giving the following error... error: gtkmozembed.h: No such file or directory I can understand, something else has to be added to the above gcc line,so that the compiler can find the gtkmozembed.h, but not getting what is that, 'something'...Looking for someone's help..Thank you...

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• Real-time aggregation of files from multiple machines to one

  - by dmitry-kay

  I need a tool which gets a list of machine names and file wildcards. Then it connects to all these machines (SSH) and begins to monitor changes (appendings to the end) in each file matched by wildcards. New lines in each such file are saved to the local machine to the file with the same name. (This is a task of real-time log files collecting.) I could use ssh + tail -f, of course, but it is not very robust: if a monitoring process dies and then restarts, some data from remote files may be lost (because tail -f does not save the position at which it is finished before). I may write this tool manually, but before - I'd like to know if such tool already exists or not.

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• /proc/user_beancounter how to perform monitoring

  - by glaz666

  Hi, I want to perform monitoring of /proc/user_beancounters to see when the system hits the limits and what process is to blame. Does anybody know tools for this issue?

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• Bash script to replace spaces in file names

  - by armandino

  Can anyone recommend a safe solution to recursively replace spaces with underscores in file and directory names starting from a given root directory? For example, $ tree . |-- a dir | `-- file with spaces.txt `-- b dir |-- another file with spaces.txt `-- yet another file with spaces.pdf becomes $ tree . |-- a_dir | `-- file_with_spaces.txt `-- b_dir |-- another_file_with_spaces.txt `-- yet_another_file_with_spaces.pdf

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• how do i claim a low-numbered port as non-root the "right way"

  - by qbxk

  I have a script that I want to run as a daemon listening on a low-numbered port (< 1024) Script is in python, though answers in perl are also acceptable. The script is being daemonized using start-stop-daemon in a startup script, which may complicate the answer What I really (think) don't want is to type ps -few and see this process running with a "root" on it's line. How do I do it? ( from my less-than-fully-educated-about-system-calls perspective, I can see 3 avenues, Run the script as root (no --user/--group/--chuid to start-stop-daemon), and have it de-escalate it's user after it claims the port Setuid root on the script (chmod u+s), and run the script as the running user, (via --user/--group/--chuid to start-stop-daemon, the startup script still has to be called as root), in the script, acquire root privileges, claim the port, and then revert back to normal user something else i'm unaware of )

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