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  • Replacing Part of Text Using Sed

    - by neversaint
    I have the following text file Eif2ak1.aSep07 Eif2ak1.aSep07 LOC100042862.aSep07-unspliced NADH5_C.0.aSep07-unspliced LOC100042862.aSep07-unspliced NADH5_C.0.aSep07-unspliced What I want to do is to remove all the text starting from period (.) to the end. But why this command doesn't do it? sed 's/\.*//g' myfile.txt What's the right way to do it?

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  • Serial port determinism

    - by Matt Green
    This seems like a simple question, but it is difficult to search for. I need to interface with a device over the serial port. In the event my program (or another) does not finish writing a command to the device, how do I ensure the next run of the program can successfully send a command? Example: The foo program runs and begins writing "A_VERY_LONG_COMMAND" The user terminates the program, but the program has only written, "A_VERY" The user runs the program again, and the command is resent. Except, the device sees "A_VERYA_VERY_LONG_COMMAND," which isn't what we want. Is there any way to make this more deterministic? Serial port programming feels very out-of-control due to issues like this.

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  • CPU Affinity Masks (Putting Threads on different CPUs)

    - by hahuang65
    I have 4 threads, and I am trying to set thread 1 to run on CPU 1, thread 2 on CPU 2, etc. However, when I run my code below, the affinity masks are returning the correct values, but when I do a sched_getcpu() on the threads, they all return that they are running on CPU 4. Anybody know what my problem here is? Thanks in advance! #define _GNU_SOURCE #include <stdio.h> #include <pthread.h> #include <stdlib.h> #include <sched.h> #include <errno.h> void *pthread_Message(char *message) { printf("%s is running on CPU %d\n", message, sched_getcpu()); } int main() { pthread_t thread1, thread2, thread3, thread4; pthread_t threadArray[4]; cpu_set_t cpu1, cpu2, cpu3, cpu4; char *thread1Msg = "Thread 1"; char *thread2Msg = "Thread 2"; char *thread3Msg = "Thread 3"; char *thread4Msg = "Thread 4"; int thread1Create, thread2Create, thread3Create, thread4Create, i, temp; CPU_ZERO(&cpu1); CPU_SET(1, &cpu1); temp = pthread_setaffinity_np(thread1, sizeof(cpu_set_t), &cpu1); printf("Set returned by pthread_getaffinity_np() contained:\n"); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu1)) printf("CPU1: CPU %d\n", i); CPU_ZERO(&cpu2); CPU_SET(2, &cpu2); temp = pthread_setaffinity_np(thread2, sizeof(cpu_set_t), &cpu2); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu2)) printf("CPU2: CPU %d\n", i); CPU_ZERO(&cpu3); CPU_SET(3, &cpu3); temp = pthread_setaffinity_np(thread3, sizeof(cpu_set_t), &cpu3); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu3)) printf("CPU3: CPU %d\n", i); CPU_ZERO(&cpu4); CPU_SET(4, &cpu4); temp = pthread_setaffinity_np(thread4, sizeof(cpu_set_t), &cpu4); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu4)) printf("CPU4: CPU %d\n", i); thread1Create = pthread_create(&thread1, NULL, (void *)pthread_Message, thread1Msg); thread2Create = pthread_create(&thread2, NULL, (void *)pthread_Message, thread2Msg); thread3Create = pthread_create(&thread3, NULL, (void *)pthread_Message, thread3Msg); thread4Create = pthread_create(&thread4, NULL, (void *)pthread_Message, thread4Msg); pthread_join(thread1, NULL); pthread_join(thread2, NULL); pthread_join(thread3, NULL); pthread_join(thread4, NULL); return 0; }

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  • SWT: problems with clicking button after using setEnabled() on Linux

    - by Laimoncijus
    Hi, I have a strange case with SWT and Button after using setEnabled() - seems if I disable and enable button at least once - I cannot properly click with mouse on it anymore... Already minify code to very basic: import org.eclipse.swt.SWT; import org.eclipse.swt.events.SelectionEvent; import org.eclipse.swt.events.SelectionListener; import org.eclipse.swt.layout.GridLayout; import org.eclipse.swt.widgets.Button; import org.eclipse.swt.widgets.Display; import org.eclipse.swt.widgets.Shell; public class TestButton { public TestButton() { Display display = new Display(); Shell shell = new Shell(display); GridLayout mainLayout = new GridLayout(); shell.setLayout(mainLayout); shell.setSize(100, 100); Button testButton = new Button(shell, SWT.PUSH); testButton.addSelectionListener(new TestClickListener()); testButton.setText("Click me!"); //testButton.setEnabled(false); //testButton.setEnabled(true); shell.open(); while (!shell.isDisposed()) { if (!display.readAndDispatch()) display.sleep(); } display.dispose(); } class TestClickListener implements SelectionListener { @Override public void widgetDefaultSelected(SelectionEvent e) { } @Override public void widgetSelected(SelectionEvent e) { System.out.println("Click!"); } } public static void main(String[] args) { new TestButton(); } } When I keep these 2 lines commented out - I can properly click on a button and always get "Click!" logged, but if I uncomment them - then I can't click on button properly with mouse anymore - button visually seems to be clicked, but nothing is logged... Am I doing something wrong here? Or maybe it's some kind of bug on Linux platform? Because on Mac running the same code I never experienced such problems... Thanks for any hint! P.S. Running code on Ubuntu 9.10, Gnome + Compiz, Sun Java 1.6.0.16

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  • Possible memory leak problem

    - by MaiTiano
    I write two pieces of c programs like following, during memcheck process using Valgrind, a lot of mem leak information is given. int GetMemory(int framewidth, int frameheight, int SR/*, int blocksize*//*,int ALL_REF_NUM*/) { //int i,j; int memory_size = 0; //int refnum = ALL_REF_NUM; int input_search_range = SR; memory_size += get_mem2D(&curFrameY, frameheight, framewidth); memory_size += get_mem2D(&curFrameU, frameheight>>1, framewidth>>1); memory_size += get_mem2D(&curFrameV, frameheight>>1, framewidth>>1); memory_size += get_mem3D(&prevFrameY, refnum, frameheight, framewidth);// to allocate reference frame buffer accoding to the reference frame number memory_size += get_mem3D(&prevFrameU, refnum, frameheight>>1, framewidth>>1); memory_size += get_mem3D(&prevFrameV, refnum, frameheight>>1, framewidth>>1); memory_size += get_mem2D(&mpFrameY, frameheight, framewidth); memory_size += get_mem2D(&mpFrameU, frameheight>>1, framewidth>>1); memory_size += get_mem2D(&mpFrameV, frameheight>>1, framewidth>>1); memory_size += get_mem2D(&searchwindow, input_search_range*2 + blocksize, input_search_range*2 + blocksize);// to allocate search window according to the searchrange /*memory_size +=*/ get_mem1D(/*&SAD_cost, height, width*/); // memory_size += get_mem2D(&searchwindow, 80, 80);// if searchrange is 32, then only 32+1+32+15 pixels is needed in each row and col, therefore the range of // search window is enough to be set to 80 ! memory_size += get_mem2Dint(&all_mv, height/blocksize, width/blocksize); return 0; } void FreeMemory(int refno) { free_mem2D(curFrameY); free_mem2D(curFrameU); free_mem2D(curFrameV); free_mem3D(prevFrameY,refno); free_mem3D(prevFrameU,refno); free_mem3D(prevFrameV,refno); free_mem2D(mpFrameY); free_mem2D(mpFrameU); free_mem2D(mpFrameV); free_mem2D(searchwindow); free_mem1D(); free_mem2Dint(all_mv); } void free_mem1D() { free(SAD_cost); } Now I hope to make sure where are the possible problems in my program? Here I may post some valgrind information to let you know about the actual error information. ==29105== by 0x804A906: main (me_search.c:1480) ==29105== ==29105== ==29105== HEAP SUMMARY: ==29105== in use at exit: 124,088 bytes in 18 blocks ==29105== total heap usage: 37 allocs, 21 frees, 749,276 bytes allocated ==29105== ==29105== 272 bytes in 1 blocks are still reachable in loss record 1 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x804885E: GetMemory (me_search.c:117) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 352 bytes in 1 blocks are still reachable in loss record 2 of 18 ==29105== at 0x4024F20: malloc (vg_replace_malloc.c:236) ==29105== by 0x409537E: __fopen_internal (iofopen.c:76) ==29105== by 0x409544B: fopen@@GLIBC_2.1 (iofopen.c:107) ==29105== by 0x804A660: main (me_search.c:1439) ==29105== ==29105== 584 bytes in 1 blocks are still reachable in loss record 3 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x8048724: GetMemory (me_search.c:106) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 584 bytes in 1 blocks are still reachable in loss record 4 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x8048747: GetMemory (me_search.c:107) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 584 bytes in 1 blocks are still reachable in loss record 5 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x8048809: GetMemory (me_search.c:114) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 584 bytes in 1 blocks are still reachable in loss record 6 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x804882C: GetMemory (me_search.c:115) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 584 bytes in 1 blocks are definitely lost in loss record 7 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x804A4F8: get_mem3D (me_search.c:1393) ==29105== by 0x804879B: GetMemory (me_search.c:110) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 584 bytes in 1 blocks are definitely lost in loss record 8 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x804A4F8: get_mem3D (me_search.c:1393) ==29105== by 0x80487C9: GetMemory (me_search.c:111) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 1,168 bytes in 1 blocks are still reachable in loss record 9 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x8048701: GetMemory (me_search.c:105) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 1,168 bytes in 1 blocks are still reachable in loss record 10 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x80487E6: GetMemory (me_search.c:113) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 1,168 bytes in 1 blocks are definitely lost in loss record 11 of 18 ==29105== at 0x402425F: calloc (vg_replace_malloc.c:467) ==29105== by 0x804A296: get_mem2D (me_search.c:1315) ==29105== by 0x804A4F8: get_mem3D (me_search.c:1393) ==29105== by 0x804876D: GetMemory (me_search.c:109) ==29105== by 0x804A757: main (me_search.c:1456) ==29105== ==29105== 6,336 bytes in 1 blocks are definitely lost in loss record 12 of 18 ==29105== at 0x4024F20: malloc (vg_replace_malloc.c:236) ==29105== by 0x804A25C: get_mem1D (me_search.c:1295) ==29105== by 0x8048866: GetMemory (me_search.c:119) ==29105== by 0x804A757: main (me_search.c:1456)

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  • get a list of function names in a shell script

    - by n-alexander
    I have a Bourne Shell script that has several functions in it, and allows to be called in the following way: my.sh <func_name> <param1> <param2> Inside func_name() will be called with param1 and param2. I want to create a "help" function that would just list all available functions, even without parameters. The question: how do I get a list of all function names in a script from inside the script? I'd like to avoid having to parse it and look for function patterns. Too easy to get wrong. Thanks, Alex

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  • File system to choose for NAS box based on FreeNAS or OpenFiler [closed]

    - by Chris
    I'm a photographer and I have a requirement find a better method of storing my photos other than multiple USB2 drives via USB hubs. Currently I use a Macbook Pro and 6 external drives connected via USB2 or FW800. 3 are a copy of the first three, kept up to day manually by running an rsync backup. I'd like to run a FreeNAS or OpenFiler NAS box using 2TB drives mirrored via software RAID. But - I would like to have the flexibility of also plugging into the drive physically for the faster throughput when necessary. So. My question is, is there a file system that both *nix and Mac OSX will play nice with? Many thanks, Chris.

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  • Creating a "less"-like console pager interface for pysqlite3 database

    - by Eric
    I would like to add some interactive capability to a python CLI application I've writen that stores data in a SQLite3 database. Currently, my app reads-in a certain type of file, parses and analyzes, puts the analysis data into the db, and spits the formatted records to stdout (which I generally pipe to a file). There are on-the-order-of a million records in this file. Ideally, I would like to eliminate that text file situation altogether and just loop after that "parse and analyze" part, displaying a screen's worth of records, and allowing the user to page through them and enter some commands that will edit the records. The backend part I know how to do. Can anyone suggest a good starting point for creating that pager frontend either directly in the console (like the pager "less"), through ncurses, or some other system?

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  • How to develop a DirectFB app without leaving X.11 environment.

    - by Edu Felipe
    Hi folks, I'm trying to develop a GUI application for an embedded platform, without any windowing whatsoever and I'm doing that with DirectFB, and it suits my needs very fine. Since the embedded I develop for is not that powerful, I would really like to try to develop on my own Ubuntu desktop. The problem is Framebuffer is conflicting with X.org causing me to leave the whole desktop, and shutdown X.org just to see the result of my changes. Is there a good framebuffer simulator that suits my needs? Qt has one, called QVFb, but it only works for developing Qt apps, and the VNC back-end of DirectFB always crash. So, any ideas?

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  • Alternatives to ImageMagick for PDF downsizing

    - by Craig Coston
    Having an issue with some PDF files not displaying properly in our iPad app. I have come to the conclusion that we are needing to standardize by "converting" PDF to PDF. I have successfully processed this using ImageMagick to convert the PDF to PNG (resized), and then pushing the PNG(s) back into a PDF. However, something within ImageMagick is making photos within PDFs display wrong. Same issue just converting a JPG or other graphic to PDF in ImageMagick. I solved that by taking the output of the converted ImageMagick file and converting it again using GD to PNG, then pushing it through our PDF converter. So my question is this: What other PHP workflows would work with this, other than using ImageMagick for the conversion back to PDF? We are not opposed to a paid solution, we just need something that works. Our server runs centOS.

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  • How can I link glibc statically with qt

    - by yan bellavance
    I have built a static version of qt and download a static version of glibc. Now I would like to link glibc statically to my qt application. I know about going into the .pro and adding the line LIBS += -L path/to/static_lib but I am wondering if these that is enough? Will it still link glibc statically even though the OS I am building on has the dynamic libraries also? The reason I am doing this is to deploy the application in a standalone manner. (After installing and updating Red Hat 5.3 glibc_2.9 was not found on the target computer)

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  • vsftpd status stop/waiting Ubuntu

    - by Majin Vegeta
    I'm trying to configure ftp over amazon EC2 instance, I've installed vsftpd and did the steps of adding user and modifying the vsftpd.conf file, but I'm getting my service status as ubuntu@ip-10-38-106-212:~$ sudo service vsftpd status vsftpd stop/waiting I've tried to reinstall vsftpd but still getting the same, I've also added the port 20 and 21 in my security group policy to skip the firewall. Can anyone tell me how to check whats wrong with this vsftpd, why its stopped and not coming into running state. Thank u

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  • How the kernel gives seg. fault for a scenario like this?

    - by bala1486
    I have a doubt in accessing some invalid data. How will the OS cause segmentation fault for a scenario like this? Suppose a date segment has some 100 bytes. This will be mapped and a page table entry will be created. But the page size is 4K. Consider the data segment is aligned with this page boundary. So at first consider accessing a valid data within the 100 bytes. So now the page table entry is in TLB. Next if you try to access some invalid data between the 100 and 4K, the entry is there in page table and will it be allowed to access the invalid data??? Thanks, Bala

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  • grep + add time out after some time if not find the relevant match

    - by yael
    Dear friends I use the following command syntax to search params in my script grep -qsRw -m1 "any_param" /dir/..../ Some times the search take avery long time The question is how to add time out to grep command For example after 20 seconds grep will break out If it not illegal to add time out to grep , how it will possible on other way? THX Yael

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  • How do I change bash history completion to complete what's already on the line?

    - by blokkie
    I found a command a couple of months ago that made my bash history auto-complete on what's already on the line when pressing the up arrow: $ vim fi Press ? $ vim file.py I'd like to set this up on my new computer, because it saves a lot of time when keeping a big history. The problem is that I can't for the life of me remember where it was mentioned and reading through endless bash references and tutorials unfortunately didn't help either. Does anybody know the command?

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  • Simulate Network Presence in dbus

    - by Evans
    Is there a way using Python to simulate the presence of an active network connection using dbus? If I call getstate() on the dbus, I'm able to get the current network state. I want to set the current state to 4 (Connection Present). This is because Network Manager is not able to connect using my modem and I use other tools to connect. Pidgin, Empathy and other software are not able to detect the network.

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  • PHP set timeout for script, set_time_limit not working

    - by tehalive
    I have a command-line PHP script that runs a wget request using each member of an array with foreach. This wget request can sometimes take a long time so I want to be able to set a timeout for killing the script if it goes past 15 seconds for example. I have PHP safemode disabled and tried set_time_limit(15) early in the script, however it continues indefinitely. I've given up troubleshooting set_time_limit() and was trying to find other ways to kill the script after 15 seconds of execution. However, I'm not sure if it's possible to check the time a script has been running while it's in the middle of a wget request at the same time (a do while loop did not work). Thanks for any tips!

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  • ./configure : /bin/sh^M : bad interpreter

    - by Vineeth
    Hello there, I've been trying to install lpng142 on my fed 12 system. Seems like a problem to me. I get this error [root@localhost lpng142]# ./configure bash: ./configure: /bin/sh^M: bad interpreter: No such file or directory [root@localhost lpng142]# How do I fix this? and for more details, I shall include the /etc/fstub file details here # # /etc/fstab # Created by anaconda on Wed May 26 18:12:05 2010 # # Accessible filesystems, by reference, are maintained under '/dev/disk' # See man pages fstab(5), findfs(8), mount(8) and/or blkid(8) for more info # /dev/mapper/VolGroup-lv_root / ext4 defaults 1 1 UUID=ce67cf79-22c3-45d4-8374-bd0075617cc8 /boot ext4 defaults 1 2 /dev/mapper/VolGroup-lv_swap swap swap defaults 0 0 tmpfs /dev/shm tmpfs defaults 0 0 devpts /dev/pts devpts gid=5,mode=620 0 0 sysfs /sys sysfs defaults 0 0 proc /proc proc defaults 0 0 [root@localhost etc]# Help, please

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  • shadow password

    - by LinuxGeek
    I'm trying to compare shadow password with php cli but not work ! i use this function so i can create password like shadow function shadow ($input){ for ($n = 0; $n < 9; $n++){ $s .= chr(rand(64,126)); } $seed = "$1$".$s."$"; $return = crypt($input,$seed); return $return; } when i replace the result in shadow it's work with the password but it's have different character how i can compare it . thanks

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  • execute a command

    - by lakshmipathi
    I have script file where a command is stored in a variable First i got the command (assume "ls -l " command) cmd= cat /proc/2345/cmdline now doing echo $cmd outputs ls -l Now how to use $cmd to actually execute that command. which is ls -l

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  • kill -9 + disable messages (standart output) from kill command

    - by yael
    hi all I write the following script this script enable timeout of 20 second if grep not find the relevant string in the file the script working well but the output from the script is like that: ./test: line 11: 30039: Killed how to disable this message from the kill command? how to tell kill command to ignore if process not exist? THX Yael !/bin/ksh ( sleep 20 ; [[ ! -z ps -ef | grep "qsRw -m1" | awk '{print $2}' ]] && kill -9 2/dev/null ps -ef | grep "qsRw -m1" | awk '{print $2}' ; sleep 1 ) & RESULT=$! print "the proccess:"$RESULT grep -qsRw -m1 "monitohhhhhhhr" /var if [[ $? -ne 0 ]] then print "kill "$RESULT kill -9 $RESULT fi print "ENDED" ./test the proccess:30038 ./test: line 11: 30039: Killed kill 3003

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  • Good development themes/environments for Gnome/kde/whatever?

    - by EvanAlm
    I've searched forever for good themes or customized versions of any type of x-server that is designed for development in terms of web productions/programming for all kind of stuffs. Features such as simplified workspace overviews, good tabbing support etc. For multimedia "UbuntuStudio" exists, and something like that but for programming instead. I know that it's possible to customize it by myself but I don't have the skills to make it all happen. Another reason why it's hard for me to customize it is that I simply do not know everything that would make it good for me. I've looked into gnome-shell and it has (according to me) superb workspace overview functions, but lacks in other spaces instead. Any help in finding a good solution for me in this case is appreciated. If some of you also have had this problem and found a solution that works for you, please tell me how you did :) Would love to solve this for once!

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