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  • Howto plot two cumulative frequency graph together

    - by neversaint
    I have data that looks like this: #val Freq1 Freq2 0.000 178 202 0.001 4611 5300 0.002 99 112 0.003 26 30 0.004 17 20 0.005 15 20 0.006 11 14 0.007 11 13 0.008 13 13 ...many more lines.. Full data can be found here: http://dpaste.com/173536/plain/ What I intend to do is to have a cumulative graph with "val" as x-axis with "Freq1" & "Freq2" as y-axis, plot together in 1 graph. I have this code. But it creates two plots instead of 1. dat <- read.table("stat.txt",header=F); val<-dat$V1 freq1<-dat$V2 freq2<-dat$V3 valf1<-rep(val,freq1) valf2<-rep(val,freq2) valfreq1table<- table(valf1) valfreq2table<- table(valf2) cumfreq1=c(0,cumsum(valfreq1table)) cumfreq2=c(0,cumsum(valfreq2table)) plot(cumfreq1, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq1) plot(cumfreq2, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq2) What's the right way to approach this?

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  • using qsub (sge) with multi-threaded applications

    - by dan12345
    i wanted to submit a multi-threaded job to the cluster network i'm working with - but the man page about qsub is not clear how this is done - By default i guess it just sends it as a normal job regardless of the multi-threading - but this might cause problems, i.e. sending many multi-threaded jobs to the same computer, slowing things down. Does anyone know how to accomplish this? thanks. The batch server system is sge.

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  • Ubuntu 10.04: Unable to Start RabbitMQ Server Post-Installation

    - by Garland W. Binns
    After installing RabbitMQ on Ubuntu 10.04 I receive a failure message that the service was unable to start. Any insight into the issue would be greatly appreciated! Below are contents of startup_log and startup_err. Startup_log: {error_logger,{{2012,7,7},{15,50,31}},"Protocol: ~p: register error: ~p~n",["inet_tcp",{{badmatch,{error,etimedout}},[{inet_tcp_dist,listen,1},{net_kernel,start_protos,4},{net_kernel,start_protos,3},{net_kernel,init_node,2},{net_kernel,init,1},{gen_server,init_it,6},{proc_lib,init_p_do_apply,3}]}]} {error_logger,{{2012,7,7},{15,50,31}},crash_report,[[{initial_call,{net_kernel,init,['Argument__1']}},{pid,<0.20.0},{registered_name,[]},{error_info,{exit,{error,badarg},[{gen_server,init_it,6},{proc_lib,init_p_do_apply,3}]}},{ancestors,[net_sup,kernel_sup,<0.9.0]},{messages,[]},{links,[#Port<0.100,<0.17.0]},{dictionary,[{longnames,false}]},{trap_exit,true},{status,running},{heap_size,987},{stack_size,24},{reductions,512}],[]]} {error_logger,{{2012,7,7},{15,50,31}},supervisor_report,[{supervisor,{local,net_sup}},{errorContext,start_error},{reason,{'EXIT',nodistribution}},{offender,[{pid,undefined},{name,net_kernel},{mfa,{net_kernel,start_link,[[rabbitmqprelaunch877,shortnames]]}},{restart_type,permanent},{shutdown,2000},{child_type,worker}]}]} {error_logger,{{2012,7,7},{15,50,31}},supervisor_report,[{supervisor,{local,kernel_sup}},{errorContext,start_error},{reason,shutdown},{offender,[{pid,undefined},{name,net_sup},{mfa,{erl_distribution,start_link,[]}},{restart_type,permanent},{shutdown,infinity},{child_type,supervisor}]}]} {error_logger,{{2012,7,7},{15,50,31}},std_info,[{application,kernel},{exited,{shutdown,{kernel,start,[normal,[]]}}},{type,permanent}]} {"Kernel pid terminated",application_controller,"{application_start_failure,kernel,{shutdown,{kernel,start,[normal,[]]}}}"} Startup_err: Crash dump was written to: erl_crash.dump Kernel pid terminated (application_controller) ({application_start_failure,kernel,{shutdown,{kernel,start,[normal,[]]}}})

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  • shell script filter du and find by a string inside a file in a subfolder

    - by Jason
    I have the following command that I run on cygwin: find /cygdrive/d/tmp/* -maxdepth 0 -mtime -150 -type d | xargs du --max-depth=0 > foldersizesreport.csv I intended to do the following with this command: for each folder under /d/tmp/ that was modified in last 150 days, check its total size including files within it and report it to file foldersizesreport.csv however that is now not good enough for me, as it turns out inside each /d/tmp/subfolder1/somefile.properties /d/tmp/subfolder2/somefile.properties /d/tmp/subfolder3/somefile.properties /d/tmp/subfolder4/somefile.properties so as you see inside each subfolderX there is a file named somefile.properties inside it there is a property SOMEPROPKEY=3808612800100 (among other properties) this is the time in millisecond, i need to change the command so that instead of -mtime -150 it will include in the whole calculation only subfolderX that has a file inside them somefile.properties where the SOMEPROPKEY=3808612800100 is the time in millisecond in future, if the value SOMEPROPKEY=23948948 is in past then dont at all include the folder in the foldersizesreport.csv because its not relevant to me. so the result report should be looking like: /d/tmp/,subfolder1,<itssizein KB> /d/tmp/,subfolder2,<itssizein KB> and if subfolder3 had a SOMEPROPKEY=34243234 (time in ms in past) then it would not be in that csv file. so basically I'm looking for: find /cygdrive/d/tmp/* -maxdepth 0 -mtime -150 -type d | <only subfolders that have in them property in file SOMEPROPKEY=28374874827 - time in ms in future and not in past | xargs du --max-depth=0 > foldersizesreport.csv

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  • VSFTPD: Cannot figure this thing out...

    - by A Wizard Did It
    Alright, I've been giving this the best that I can, reading through various tutorials on google, but I cannot seem to get vsftpd running the way I want. For a short while I had it working with one account, but then that stopped and I haven't been able to get it to work since. I've since reformated and reinstall Ubuntu 10.04 LTS. I used apt-get install vsftpd and that's where I am now... I'd really appreciate if anyone could help me understand exactly how this is supposed to work... How do I add FTP accounts and set their home directory to something like /var/www/public_html?

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  • Problem with unix pipe command

    - by Keyo
    I have a list of directory names in a text file. I want to use these as part of a file_name a git-svn clone command. This prints out the contents of the file line by line. cat repos_to_migrate.txt | tee $1 This however does not work: cat repos_to_migrate.txt | git svn clone file:///home/svn/$1 ... Unable to open repository 'file:///home/svn' ... Any ideas here? I'f it matters I'm running centos5.

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  • X11 and ARGB visuals: does DefaultDepth() never return 32?

    - by Andy
    Hi, I'm establishing a connection to the X server like this: display = XOpenDisplay(NULL); screen = DefaultScreen(display); depth = DefaultDepth(display, screen); I'm wondering now why "depth" is always set to 24. I would expect that it is only 24 when compositing is turned off, but in fact, it is still 24 even when I turn on compositing. So in order to get a 32-bit ARGB visual I need to call XGetVisualInfo() first with depth set explicitly to 32. Now to my question: Will DefaultDepth() generally never return more than 24 or is it just on my system? (my graphics board is somewhat dated...). I know that it could return 15, 16 or even 8 for a CLUT display but can it return 32? Or do I always have to use XGetVisualInfo() first to get a ARGB 32-bit visual? Thanks, Andy

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  • Bash scripting - Iterating through "variable" variable names for a list of associative arrays

    - by user1550254
    I've got a variable list of associative arrays that I want to iterate through and retrieve their key/value pairs. I iterate through a single associative array by listing all its keys and getting the values, ie. for key in "${!queue1[@]}" do echo "key : $key" echo "value : ${queue1[$key]}" done The tricky part is that the names of the associative arrays are variable variables, e.g. given count = 5, the associative arrays would be named queue1, queue2, queue3, queue4, queue5. I'm trying to replace the sequence above based on a count, but so far every combination of parentheses and eval has not yielded much more then bad substitution errors. e.g below: for count in {1,2,3,4,5} do for key in "${!queue${count}[@]}" do echo "key : $key" echo "value : ${queue${count}[$key]}" done done Help would be very much appreciated!

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  • Determine how much can I write into a filehandle; copying data from one FH to the other.

    - by Vi
    How to determine if I can write the given number of bytes to a filehandle (socket actually)? (Alternatively, how to "unread" the data I had read from other filehandle?) I want something like: n = how_much_can_I_write(w_handle); n = read(r_handle, buf, n); assert(n==write(w_handle, buf, n)); Both filehandles (r_handle and w_handle) have received ready status from epoll_wait. I want all data from r_handle to be copied to w_handle without using a "write debt" buffer. In general, how to copy the data from one filehandle to the other simply and reliably?

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  • ZeroMQ REQ/REP on ipc:// and concurrency

    - by Metiu
    I implemented a JSON-RPC server using a REQ/REP 0MQ ipc:// socket and I'm experiencing strange behavior which I suspect is due to the fact that the ipc:// underlying unix socket is not a real socket, but rather a single pipe. From the documentation, one has to enforce strict zmq_send()/zmq_recv() alternation, otherwise the out-of-order zmq_send() will return an error. However, I expected the enforcement to be per-client, not per-socket. Of course with a Unix socket there is just one pipeline from multiple clients to the server, so the server won't know who it is talking with. Two clients could zmq_send() simultaneously and the server would see this as an alternation violation. The sequence could be: ClientA: zmq_send() ClientB: zmq_send() : will it block until the other send/receive completes? will it return -1? (I suspect it will with ipc:// due to inherent low-level problems, but with TCP it could distinguish the two clients) ClientA: zmq_recv() ClientB: zmq_recv() so what about tcp:// sockets? Will it work concurrently? Should I use some other locking mechanism to work around this?

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  • Strange client's address returned throug accept(..) function.

    - by Negai
    Hi everyone, I'm a socket programming newbie. Here's a snippet: struct sockaddr_storage client_addr; ... client_addr_size = sizeof(client_addr); client_socket = accept( server_socket, (struct sockaddr *)&client_addr, &client_addr_size ); ... result = inet_ntop( AF_INET, &((struct sockaddr_in *)&client_addr)->sin_addr, client_addr_str, sizeof(client_addr_str) ); Whenever the client connects the address I get is 0.0.0.0 regardless from the host. Can anybody explain, what I'm doing wrong? Thanks.

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  • tint2 - short format date?

    - by Tedee12345
    How to shorten the format of the date on this format? 09:58 @ nie 20 paz This is the configuration file: #--------------------------------------------- # CLOCK #--------------------------------------------- time1_format = %H:%M @ %A %d %B time1_font = Visitor TT1 BRK 10 #time2_format = %A %d %B time2_font = (null) clock_font_color = #ffffff 76 clock_padding = 2 1 clock_background_id = 0 Thank you for your help.

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  • Can not open ports in iptables on CentOS 5??

    - by abszero
    I am trying to open up ports in CentOS's firewall and am having a terrible go at it. I have followed the "HowTo" here: http://wiki.centos.org/HowTos/Network/IPTables as well as a few other places on the Net but I still can't get the bloody thing to work. Basically I wanted to get two things working: VNC and Apache over the internal network. The problem is that the firewall is blocking all attempts to connect to these services. Now if I issue service iptables stop and then try to access the server via VNC or hit the webserver everything works as expected. However the moment I turn iptables back on all of my access is blocked. Below is a truncated version of my iptables file as it appears in vi -A RH-Firewall-1-INPUT -p tcp -m state --state NEW -m tcp --dport 5801 -j ACCEPT -A RH-Firewall-1-INPUT -p tcp -m state --state NEW -m tcp --dport 5901 -j ACCEPT -A RH-Firewall-1-INPUT -p tcp -m state --state NEW -m tcp --dport 6001 -j ACCEPT -A RH-Firewall-1-INPUT -p tcp -m state --state NEW -m tcp --dport 5900 -j ACCEPT -A RH-Firewall-1-INPUT -p tcp -m state --state NEW -m tcp --dport 80 -j ACCEPT Really I would just be happy if I could get port 80 opened up for Apache since I can do most stuff via putty but if I could figure out VNC as well that would be cool. As far as VNC goes there is just a single/user desktop that I am trying to connect to via: [ipaddress]:1 Any help would be greatly appreciated!

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  • Can I get the amount of time for which a key is pressed on a keyboard

    - by Adi
    Dear all, I am working on a project in which I have to develop bio-passwords based on user's keystroke style. Suppose a user types a password for 20 times, his keystrokes are recorded, like holdtime : time for which a particular key is pressed. digraph time : time it takes to press a different key. suppose a user types a password " COMPUTER". I need to know the time for which every key is pressed. something like : holdtime for the above password is C-- 200ms O-- 130ms M-- 150ms P-- 175ms U-- 320ms T-- 230ms E-- 120ms R-- 300ms The rational behind this is , every user will have a different holdtime. Say a old person is typing the password, he will take more time then a student. And it will be unique to a particular person. To do this project, I need to record the time for each key pressed. I would greatly appreciate if anyone can guide me in how to get these times. Editing from here.. Language is not important, but I would prefer it in C. I am more interested in getting the dataset.

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  • User to kernel mode big picture?

    - by fsdfa
    I've to implement a char device, a LKM. I know some basics about OS, but I feel I don't have the big picture. In a C programm, when I call a syscall what I think it happens is that the CPU is changed to ring0, then goes to the syscall vector and jumps to a kernel memmory space function that handle it. (I think that it does int 0x80 and in eax is the offset of the syscall vector, not sure). Then, I'm in the syscall itself, but I guess that for the kernel is the same process that was before, only that it is in kernel mode, I mean the current PCB is the process that called the syscall. So far... so good?, correct me if something is wrong. Others questions... how can I write/read in process memory?. If in the syscall handler I refer to address, say, 0xbfffffff. What it means that address? physical one? Some virtual kernel one?

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  • In BASH how can i find my system on active internet interface, what is the upload speed?

    - by YumYumYum
    I am trying to write an TUI bandwidth trace application which on query can instantly tell me, that my download and upload speed is XXXX. I have figured out that download i can use with wget and parse it using BASH, but how do i get the upload speed? Example of download parse method: 1) Remote download : wget http://x.x.com:7007/files/software/vnc.zip Length: 1594344 (1.5M) [application/zip] Saving to: `vnc.zip' 100%[==================================================================>] 1,594,344 573K/s in 2.7s 2012-03-24 11:35:22 (573 KB/s) - `vnc.zip' saved [1594344/1594344] 2) Local download tells Length: 1594344 (1.5M) [application/zip] Saving to: `vnc.zip' 100%[==================================================================>] 1,594,344 --.-K/s in 0.1s 2012-03-24 06:43:04 (11.4 MB/s) - `vnc.zip' saved [1594344/1594344]

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  • Do you disable SELinux?

    - by manicmethod
    I want to know if people here typically disable SELinux on installations where it is on by default? If so can you explain why, what kind of system it was, etc? I'd like to get as many opinions on this as possible.

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  • Replacing a website on a Tomcat Server with a static HTML website

    - by Ashin Mandal
    I made a small static website for my client and now they want me to replace their present dynamic website with the static one. They have Ubuntu with SSH installed on the remote location. Their existing website is running on a Tomcat6 server and the site root is in "/var/lib/tomcat6/webapps/ROOT/". My website consists of just static HTML pages. How can I reconfigure/ replace the present website with the one I made? Should I just stop the server and replace the files in the site root with my files?

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  • how to detect lines of code with regex in VIM

    - by nightingale2k1
    Hi, I have so many println("") in my codes .. I know it is messy ... I want to put comment for each of the println(""); how to do that in VIM ? I mean I want to do that on multiple files. Also if possible, can it detect whether the lines has // already or not ... if the lines has been commented .. I don't want to add new //

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  • initscript mysql, action "start" failed. dpkg: error processing mysql-server-5.0 (--configure)

    - by mazgalici
    2 not fully installed or removed. Need to get 0B of archives. After unpacking 0B of additional disk space will be used. Do you want to continue [Y/n]? y Setting up mysql-server-5.0 (5.0.32-7etch12) ... Stopping MySQL database server: mysqld. Starting MySQL database server: mysqld . . . . . . . . . . . . . . failed! invoke-rc.d: initscript mysql, action "start" failed. dpkg: error processing mysql-server-5.0 (--configure): subprocess post-installation script returned error exit status 1 dpkg: dependency problems prevent configuration of mysql-server: mysql-server depends on mysql-server-5.0; however: Package mysql-server-5.0 is not configured yet. dpkg: error processing mysql-server (--configure): dependency problems - leaving unconfigured Errors were encountered while processing: mysql-server-5.0 mysql-server E: Sub-process /usr/bin/dpkg returned an error code (1)

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  • Running ssh-keygen without human interaction?

    - by Marco
    Would it be possible to run ssh-keygen without human interaction? I have a shell script that takes care of server deployment from start to finish, but ssh-keygen is the only remaining piece that still requires my input. Would it be possible to feed the parameters to it? Or is there something similar to debconf-set-selections that could be used for this? *running Debian

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  • Nginx logic (if cookie set, redirect here...) Is it possible?

    - by Matthew Steiner
    So, I have a pretty basic need, but I can't figure out if it's even possible, much less how to do it. I have a main page that anyone can see. Most of the rest of the application can be seen only if logged in (hence, a "set cookie"). So I was thinking, as long as they don't have a cookie set, they can just see a cached version of nginx. I can get it caching with this: proxy_cache STATIC; proxy_cache_valid 200 1d; proxy_cache_use_stale error timeout invalid_header updating http_500 http_502 http_503 http_504; And it helps a ton. (instead of 15 requests per second it gets over 1000). Now I just need some sort of "server logic" to say only serve the cached page if they have no cookie, otherwise, load the dynamic page (which will automatically redirect them into the app). Any ideas?

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  • Drupal site requires a higher memory limit after migration? Why?

    - by oalo
    Hello. We have a website which had a previous memory limit of 12 MB (12 MB in php.ini, and 16 MB in settings.php) and worked previously. After moving to a new server it started giving memory limit errors and displaying half-blank screen. We increaded the limit in both files (php.ini and settings.php) and now it works, but I dont understand how is it possible that now it needs a considerably larger amount of memory (it used to work with 12 MB, now it cont work with less than 20 MB).

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