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  • Session serialization in JavaEE environment

    - by Ionut
    Please consider the following scenario: We are working on a JavaEE project for which the scalability starts to become an issue. Up until now, we were able to scale up but this is no longer an option. Therefore we need to consider scaling out and preparing the App for a clustered environment. Our main concern right now is serializing the user sessions. Sadly, we did not consider from the beginning the issue and we are encountering the following excetion: java.io.WriteAbortedException: writing aborted; java.io.NotSerializableException: org.apache.catalina.session.StandardSessionFacade I did some research and this exception is thrown because there are objects stored on the session which does not implement the Serializable interface. Considering that all over the app there are quite a few custom objects which are stored on the session without implementing this interface, it would require a lot of tedious work and dedication to fix all these classes declaration. We will fix all this declarations but the main concern is that, in the future, there may be a developer which will add a non Serializable object on the session and break the session serialization & replication over multiple nodes. As a quick overview of the project, we are developing using a home grown framework based on Struts 1 with the Servlet 3.0 API. This means that at this point, we are using the standard session.getAttribute() and session.setAttribute() to work with the session and the session handling is scattered all over the code base. Besides updating the classes of the objects stored on session and making sure that they implement the Serializable interface, what other measures of precaution should we take in order to ensure a reliable Session replication capability on the Application layer? I know it is a little bit late to consider this but what would be the best practice in this case? Furthermore, are there any other issues we should consider regarding this transition? Thank you in advance!

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  • CreationName for SSIS 2008 and adding components programmatically

    If you are building SSIS 2008 packages programmatically and adding data flow components, you will probably need to know the creation name of the component to add. I can never find a handy reference when I need one, hence this rather mundane post. See also CreationName for SSS 2005. We start with a very simple snippet for adding a component: // Add the Data Flow Task package.Executables.Add("STOCK:PipelineTask"); // Get the task host wrapper, and the Data Flow task TaskHost taskHost = package.Executables[0] as TaskHost; MainPipe dataFlowTask = (MainPipe)taskHost.InnerObject; // Add OLE-DB source component - ** This is where we need the creation name ** IDTSComponentMetaData90 componentSource = dataFlowTask.ComponentMetaDataCollection.New(); componentSource.Name = "OLEDBSource"; componentSource.ComponentClassID = "DTSAdapter.OLEDBSource.2"; So as you can see the creation name for a OLE-DB Source is DTSAdapter.OLEDBSource.2. CreationName Reference  ADO NET Destination Microsoft.SqlServer.Dts.Pipeline.ADONETDestination, Microsoft.SqlServer.ADONETDest, Version=10.0.0.0, Culture=neutral, PublicKeyToken=89845dcd8080cc91 ADO NET Source Microsoft.SqlServer.Dts.Pipeline.DataReaderSourceAdapter, Microsoft.SqlServer.ADONETSrc, Version=10.0.0.0, Culture=neutral, PublicKeyToken=89845dcd8080cc91 Aggregate DTSTransform.Aggregate.2 Audit DTSTransform.Lineage.2 Cache Transform DTSTransform.Cache.1 Character Map DTSTransform.CharacterMap.2 Checksum Konesans.Dts.Pipeline.ChecksumTransform.ChecksumTransform, Konesans.Dts.Pipeline.ChecksumTransform, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b2ab4a111192992b Conditional Split DTSTransform.ConditionalSplit.2 Copy Column DTSTransform.CopyMap.2 Data Conversion DTSTransform.DataConvert.2 Data Mining Model Training MSMDPP.PXPipelineProcessDM.2 Data Mining Query MSMDPP.PXPipelineDMQuery.2 DataReader Destination Microsoft.SqlServer.Dts.Pipeline.DataReaderDestinationAdapter, Microsoft.SqlServer.DataReaderDest, Version=10.0.0.0, Culture=neutral, PublicKeyToken=89845dcd8080cc91 Derived Column DTSTransform.DerivedColumn.2 Dimension Processing MSMDPP.PXPipelineProcessDimension.2 Excel Destination DTSAdapter.ExcelDestination.2 Excel Source DTSAdapter.ExcelSource.2 Export Column TxFileExtractor.Extractor.2 Flat File Destination DTSAdapter.FlatFileDestination.2 Flat File Source DTSAdapter.FlatFileSource.2 Fuzzy Grouping DTSTransform.GroupDups.2 Fuzzy Lookup DTSTransform.BestMatch.2 Import Column TxFileInserter.Inserter.2 Lookup DTSTransform.Lookup.2 Merge DTSTransform.Merge.2 Merge Join DTSTransform.MergeJoin.2 Multicast DTSTransform.Multicast.2 OLE DB Command DTSTransform.OLEDBCommand.2 OLE DB Destination DTSAdapter.OLEDBDestination.2 OLE DB Source DTSAdapter.OLEDBSource.2 Partition Processing MSMDPP.PXPipelineProcessPartition.2 Percentage Sampling DTSTransform.PctSampling.2 Performance Counters Source DataCollectorTransform.TxPerfCounters.1 Pivot DTSTransform.Pivot.2 Raw File Destination DTSAdapter.RawDestination.2 Raw File Source DTSAdapter.RawSource.2 Recordset Destination DTSAdapter.RecordsetDestination.2 RegexClean Konesans.Dts.Pipeline.RegexClean.RegexClean, Konesans.Dts.Pipeline.RegexClean, Version=2.0.0.0, Culture=neutral, PublicKeyToken=d1abe77e8a21353e Row Count DTSTransform.RowCount.2 Row Count Plus Konesans.Dts.Pipeline.RowCountPlusTransform.RowCountPlusTransform, Konesans.Dts.Pipeline.RowCountPlusTransform, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b2ab4a111192992b Row Number Konesans.Dts.Pipeline.RowNumberTransform.RowNumberTransform, Konesans.Dts.Pipeline.RowNumberTransform, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b2ab4a111192992b Row Sampling DTSTransform.RowSampling.2 Script Component Microsoft.SqlServer.Dts.Pipeline.ScriptComponentHost, Microsoft.SqlServer.TxScript, Version=10.0.0.0, Culture=neutral, PublicKeyToken=89845dcd8080cc91 Slowly Changing Dimension DTSTransform.SCD.2 Sort DTSTransform.Sort.2 SQL Server Compact Destination Microsoft.SqlServer.Dts.Pipeline.SqlCEDestinationAdapter, Microsoft.SqlServer.SqlCEDest, Version=10.0.0.0, Culture=neutral, PublicKeyToken=89845dcd8080cc91 SQL Server Destination DTSAdapter.SQLServerDestination.2 Term Extraction DTSTransform.TermExtraction.2 Term Lookup DTSTransform.TermLookup.2 Trash Destination Konesans.Dts.Pipeline.TrashDestination.Trash, Konesans.Dts.Pipeline.TrashDestination, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b8351fe7752642cc TxTopQueries DataCollectorTransform.TxTopQueries.1 Union All DTSTransform.UnionAll.2 Unpivot DTSTransform.UnPivot.2 XML Source Microsoft.SqlServer.Dts.Pipeline.XmlSourceAdapter, Microsoft.SqlServer.XmlSrc, Version=10.0.0.0, Culture=neutral, PublicKeyToken=89845dcd8080cc91 Here is a simple console program that can be used to enumerate the pipeline components installed on your machine, and dumps out a list of all components like that above. You will need to add a reference to the Microsoft.SQLServer.ManagedDTS assembly. using System; using System.Diagnostics; using Microsoft.SqlServer.Dts.Runtime; public class Program { static void Main(string[] args) { Application application = new Application(); PipelineComponentInfos componentInfos = application.PipelineComponentInfos; foreach (PipelineComponentInfo componentInfo in componentInfos) { Debug.WriteLine(componentInfo.Name + "\t" + componentInfo.CreationName); } Console.Read(); } }

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  • mysql not starting

    - by Eiriks
    I have a server running on rackspace.com, it been running for about a year (collecting data for a project) and no problems. Now it seems mysql froze (could not connect either through ssh command line, remote app (sequel pro) or web (pages using the db just froze). I got a bit eager to fix this quick and rebooted the virtual server, running ubuntu 10.10. It is a small virtual LAMP server (10gig storage - I'm only using 1, 256mb ram -has not been a problem). Now after the reboot, I cannot get mysql to start again. service mysql status mysql stop/waiting I believe this just means mysql is not running. How do I get this running again? service mysql start start: Job failed to start No. Just typing 'mysql' gives: mysql ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (111) There is a .sock file in this folder, 'ls -l' gives: srwxrwxrwx 1 mysql mysql 0 2012-12-01 17:20 mysqld.sock From googleing this for a while now, I see that many talk about the logfile and my.cnf. Logs Not sure witch ones I should look at. This log-file is empty: 'var/log/mysql/error.log', so is the 'var/log/mysql.err' and 'var/log/mysql.log'. my.cnf is located in '/etc/mysql' and looks like this. Can't see anything clearly wrong with it either. # # The MySQL database server configuration file. # # You can copy this to one of: # - "/etc/mysql/my.cnf" to set global options, # - "~/.my.cnf" to set user-specific options. # # One can use all long options that the program supports. # Run program with --help to get a list of available options and with # --print-defaults to see which it would actually understand and use. # # For explanations see # http://dev.mysql.com/doc/mysql/en/server-system-variables.html # This will be passed to all mysql clients # It has been reported that passwords should be enclosed with ticks/quotes # escpecially if they contain "#" chars... # Remember to edit /etc/mysql/debian.cnf when changing the socket location. [client] port = 3306 socket = /var/run/mysqld/mysqld.sock # Here is entries for some specific programs # The following values assume you have at least 32M ram # This was formally known as [safe_mysqld]. Both versions are currently parsed. [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] # # * Basic Settings # # # * IMPORTANT # If you make changes to these settings and your system uses apparmor, you may # also need to also adjust /etc/apparmor.d/usr.sbin.mysqld. # user = mysql socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp skip-external-locking # # Instead of skip-networking the default is now to listen only on # localhost which is more compatible and is not less secure. bind-address = 127.0.0.1 # # * Fine Tuning # key_buffer = 16M max_allowed_packet = 16M thread_stack = 192K thread_cache_size = 8 # This replaces the startup script and checks MyISAM tables if needed # the first time they are touched myisam-recover = BACKUP #max_connections = 100 #table_cache = 64 #thread_concurrency = 10 # # * Query Cache Configuration # query_cache_limit = 1M query_cache_size = 16M # # * Logging and Replication # # Both location gets rotated by the cronjob. # Be aware that this log type is a performance killer. # As of 5.1 you can enable the log at runtime! #general_log_file = /var/log/mysql/mysql.log #general_log = 1 log_error = /var/log/mysql/error.log # Here you can see queries with especially long duration #log_slow_queries = /var/log/mysql/mysql-slow.log #long_query_time = 2 #log-queries-not-using-indexes # # The following can be used as easy to replay backup logs or for replication. # note: if you are setting up a replication slave, see README.Debian about # other settings you may need to change. #server-id = 1 #log_bin = /var/log/mysql/mysql-bin.log expire_logs_days = 10 max_binlog_size = 100M #binlog_do_db = include_database_name #binlog_ignore_db = include_database_name # # * InnoDB # # InnoDB is enabled by default with a 10MB datafile in /var/lib/mysql/. # Read the manual for more InnoDB related options. There are many! # # * Security Features # # Read the manual, too, if you want chroot! # chroot = /var/lib/mysql/ # # For generating SSL certificates I recommend the OpenSSL GUI "tinyca". # # ssl-ca=/etc/mysql/cacert.pem # ssl-cert=/etc/mysql/server-cert.pem # ssl-key=/etc/mysql/server-key.pem [mysqldump] quick quote-names max_allowed_packet = 16M [mysql] #no-auto-rehash # faster start of mysql but no tab completition [isamchk] key_buffer = 16M # # * IMPORTANT: Additional settings that can override those from this file! # The files must end with '.cnf', otherwise they'll be ignored. # !includedir /etc/mysql/conf.d/ I need the data in the database (so i'd like to avoid reinstalling), and I need it back up running again. All hint, tips and solutions are welcomed and appreciated.

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  • Interview with Ronald Bradford about MySQL Connect

    - by Keith Larson
    Ronald Bradford,  an Oracle ACE Director has been busy working with  database consulting, book writing (EffectiveMySQL) while traveling and speaking around the world in support of MySQL. I was able to take some of his time to get an interview on this thoughts about theMySQL Connect conference. Keith Larson: What where your thoughts when you heard that Oracle was going to provide the community the MySQL Conference ?Ronald Bradford: Oracle has already been providing various different local community events including OTN Tech Days and  MySQL community days. These are great for local regions both in the US and abroad.  In previous years there has been an increase of content at Oracle Open World, however that benefits the Oracle community far more then the MySQL community.  It is good to see that Oracle is realizing the benefit in providing a large scale dedicated event for the MySQL community that includes speakers from the MySQL development teams, invested companies in the ecosystem and other community evangelists.I fully expect a successful event and look forward to hopefully seeing MySQL Connect at the upcoming Brazil and Japan OOW conferences and perhaps an event on the East Coast.Keith Larson: Since you are part of the content committee, what did you think of the submissions that were received during call for papers?Ronald Bradford: There was a large number of quality submissions to the number of available presentation sessions. As with the previous years as a committee member for the annual MySQL conference, there is always a large variety of common cornerstone MySQL features as well as new products and upcoming companies sharing their MySQL experiences. All of the usual major players in the ecosystem will in presenting at MySQL Connect including Facebook, Twitter, Yahoo, Continuent, Percona, Tokutek, Sphinx and Amazon to name a few.  This is ensuring the event will have a large number of quality speakers and a difficult time in choosing what to attend. Keith Larson: What sessions do you look forwarding to attending? Ronald Bradford: As with most quality conferences you can only be in one place at one time, so with multiple tracks per session it is always difficult to decide. The continued work and success with MySQL Cluster, and with a number of sessions I am sure will be popular. The features that interest me the most are around the optimizer, where there are several sessions on new features, and on the importance of backups. There are three presentations in this area to choose from.Keith Larson: Are you going to cover any of the content in your books at your MySQL Connect sessions?Ronald Bradford: I will be giving two presentations at MySQL Connect. The first will include the techniques available for creating better indexes where I will be touching on some aspects of the first Effective MySQL book on Optimizing SQL Statements.  In my second presentation from experiences of managing 500+ AWS MySQL instances, I will be touching on areas including SQL tuning, backup and recovery and scale out with replication.   These are the key topics of the initial books in the Effective MySQL series that focus on performance, scalability and business continuity.  The books however cover a far greater amount of detail then can be presented in a 1 hour session. Keith Larson: What features of MySQL 5.6 do you look forward to the most ?Ronald Bradford: I am very impressed with the optimizer trace feature. The ability to see exposed information is invaluable not just for MySQL 5.6, but to also apply information discerned for optimizing SQL statements in earlier versions of MySQL.  Not everybody understands that it is easy to deploy a MySQL 5.6 slave into an existing topology running an older version if MySQL for evaluation of many new features.  You can use the new mysqlbinlog streaming feature for duplicating master binary logs on an older version with a MySQL 5.6 slave.  The improvements in instrumentation in the Performance Schema are exciting.   However, as with my upcoming Replication Techniques in Depth title, that will be available for sale at MySQL Connect, there are numerous replication features, some long overdue with provide significant management benefits. Crash Save Slaves, Global transaction Identifiers (GTID)  and checksums just to mention a few.Keith Larson: You have been to numerous conferences, what would you recommend for people at the conference? Ronald Bradford: Make the time to meet and introduce yourself to the speakers that cover the topics that most interest you. The MySQL ecosystem has a very strong community.  The relationships you build with presenters, developers and architects in MySQL can be invaluable, however they are created over time. Get to know these people, interact with them over time.  This is the opportunity to learn more then just the content from a 1 hour session. Keith Larson: Any additional tips to handling the long hours ? Ronald Bradford: Conferences can be hard, especially with all the post event drinking.  This is a two day event and I am sure will include additional events on Friday and Saturday night so come well prepared, and leave work behind. Take the time to learn something new.   You can always catchup on sleep later. Keith Larson: Thank you so much for taking some time to do this I look forward to seeing you at the MySQL Connect conference.  Please stay tuned here for more updates on MySQL. 

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  • Oracle NoSQL Database Exceeds 1 Million Mixed YCSB Ops/Sec

    - by Charles Lamb
    We ran a set of YCSB performance tests on Oracle NoSQL Database using SSD cards and Intel Xeon E5-2690 CPUs with the goal of achieving 1M mixed ops/sec on a 95% read / 5% update workload. We used the standard YCSB parameters: 13 byte keys and 1KB data size (1,102 bytes after serialization). The maximum database size was 2 billion records, or approximately 2 TB of data. We sized the shards to ensure that this was not an "in-memory" test (i.e. the data portion of the B-Trees did not fit into memory). All updates were durable and used the "simple majority" replica ack policy, effectively 'committing to the network'. All read operations used the Consistency.NONE_REQUIRED parameter allowing reads to be performed on any replica. In the past we have achieved 100K ops/sec using SSD cards on a single shard cluster (replication factor 3) so for this test we used 10 shards on 15 Storage Nodes with each SN carrying 2 Rep Nodes and each RN assigned to its own SSD card. After correcting a scaling problem in YCSB, we blew past the 1M ops/sec mark with 8 shards and proceeded to hit 1.2M ops/sec with 10 shards.  Hardware Configuration We used 15 servers, each configured with two 335 GB SSD cards. We did not have homogeneous CPUs across all 15 servers available to us so 12 of the 15 were Xeon E5-2690, 2.9 GHz, 2 sockets, 32 threads, 193 GB RAM, and the other 3 were Xeon E5-2680, 2.7 GHz, 2 sockets, 32 threads, 193 GB RAM.  There might have been some upside in having all 15 machines configured with the faster CPU, but since CPU was not the limiting factor we don't believe the improvement would be significant. The client machines were Xeon X5670, 2.93 GHz, 2 sockets, 24 threads, 96 GB RAM. Although the clients had 96 GB of RAM, neither the NoSQL Database or YCSB clients require anywhere near that amount of memory and the test could have just easily been run with much less. Networking was all 10GigE. YCSB Scaling Problem We made three modifications to the YCSB benchmark. The first was to allow the test to accommodate more than 2 billion records (effectively int's vs long's). To keep the key size constant, we changed the code to use base 32 for the user ids. The second change involved to the way we run the YCSB client in order to make the test itself horizontally scalable.The basic problem has to do with the way the YCSB test creates its Zipfian distribution of keys which is intended to model "real" loads by generating clusters of key collisions. Unfortunately, the percentage of collisions on the most contentious keys remains the same even as the number of keys in the database increases. As we scale up the load, the number of collisions on those keys increases as well, eventually exceeding the capacity of the single server used for a given key.This is not a workload that is realistic or amenable to horizontal scaling. YCSB does provide alternate key distribution algorithms so this is not a shortcoming of YCSB in general. We decided that a better model would be for the key collisions to be limited to a given YCSB client process. That way, as additional YCSB client processes (i.e. additional load) are added, they each maintain the same number of collisions they encounter themselves, but do not increase the number of collisions on a single key in the entire store. We added client processes proportionally to the number of records in the database (and therefore the number of shards). This change to the use of YCSB better models a use case where new groups of users are likely to access either just their own entries, or entries within their own subgroups, rather than all users showing the same interest in a single global collection of keys. If an application finds every user having the same likelihood of wanting to modify a single global key, that application has no real hope of getting horizontal scaling. Finally, we used read/modify/write (also known as "Compare And Set") style updates during the mixed phase. This uses versioned operations to make sure that no updates are lost. This mode of operation provides better application behavior than the way we have typically run YCSB in the past, and is only practical at scale because we eliminated the shared key collision hotspots.It is also a more realistic testing scenario. To reiterate, all updates used a simple majority replica ack policy making them durable. Scalability Results In the table below, the "KVS Size" column is the number of records with the number of shards and the replication factor. Hence, the first row indicates 400m total records in the NoSQL Database (KV Store), 2 shards, and a replication factor of 3. The "Clients" column indicates the number of YCSB client processes. "Threads" is the number of threads per process with the total number of threads. Hence, 90 threads per YCSB process for a total of 360 threads. The client processes were distributed across 10 client machines. Shards KVS Size Clients Mixed (records) Threads OverallThroughput(ops/sec) Read Latencyav/95%/99%(ms) Write Latencyav/95%/99%(ms) 2 400m(2x3) 4 90(360) 302,152 0.76/1/3 3.08/8/35 4 800m(4x3) 8 90(720) 558,569 0.79/1/4 3.82/16/45 8 1600m(8x3) 16 90(1440) 1,028,868 0.85/2/5 4.29/21/51 10 2000m(10x3) 20 90(1800) 1,244,550 0.88/2/6 4.47/23/53

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  • Simple Merging Of PDF Documents with iTextSharp 5.4.5.0

    - by Mladen Prajdic
    As we were working on our first SQL Saturday in Slovenia, we came to a point when we had to print out the so-called SpeedPASS's for attendees. This SpeedPASS file is a PDF and contains thier raffle, lunch and admission tickets. The problem is we have to download one PDF per attendee and print that out. And printing more than 10 docs at once is a pain. So I decided to make a little console app that would merge multiple PDF files into a single file that would be much easier to print. I used an open source PDF manipulation library called iTextSharp version 5.4.5.0 This is a console program I used. It’s brilliantly named MergeSpeedPASS. It only has two methods and is really short. Don't let the name fool you It can be used to merge any PDF files. The first parameter is the name of the target PDF file that will be created. The second parameter is the directory containing PDF files to be merged into a single file. using iTextSharp.text; using iTextSharp.text.pdf; using System; using System.IO; namespace MergeSpeedPASS { class Program { static void Main(string[] args) { if (args.Length == 0 || args[0] == "-h" || args[0] == "/h") { Console.WriteLine("Welcome to MergeSpeedPASS. Created by Mladen Prajdic. Uses iTextSharp 5.4.5.0."); Console.WriteLine("Tool to create a single SpeedPASS PDF from all downloaded generated PDFs."); Console.WriteLine(""); Console.WriteLine("Example: MergeSpeedPASS.exe targetFileName sourceDir"); Console.WriteLine(" targetFileName = name of the new merged PDF file. Must include .pdf extension."); Console.WriteLine(" sourceDir = path to the dir containing downloaded attendee SpeedPASS PDFs"); Console.WriteLine(""); Console.WriteLine(@"Example: MergeSpeedPASS.exe MergedSpeedPASS.pdf d:\Downloads\SQLSaturdaySpeedPASSFiles"); } else if (args.Length == 2) CreateMergedPDF(args[0], args[1]); Console.WriteLine(""); Console.WriteLine("Press any key to exit..."); Console.Read(); } static void CreateMergedPDF(string targetPDF, string sourceDir) { using (FileStream stream = new FileStream(targetPDF, FileMode.Create)) { Document pdfDoc = new Document(PageSize.A4); PdfCopy pdf = new PdfCopy(pdfDoc, stream); pdfDoc.Open(); var files = Directory.GetFiles(sourceDir); Console.WriteLine("Merging files count: " + files.Length); int i = 1; foreach (string file in files) { Console.WriteLine(i + ". Adding: " + file); pdf.AddDocument(new PdfReader(file)); i++; } if (pdfDoc != null) pdfDoc.Close(); Console.WriteLine("SpeedPASS PDF merge complete."); } } } } Hope it helps you and have fun.

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  • Git subtree not properly using .gitignore when doing a partial clone

    - by D W
    I am a graduate student with many scripts, bibliography data in bibtex, thesis draft in latex, presentations in open office, posters in scribus, and figures and result data. I would like to put everything in one project under version control. Then when I need to work on a portion such as the bibliography data, I would like to check that subdirectory out, modify it as necessary and merge it back.I would like the ability to check out one version to my home computer, and a different one to my work computer and make changes to each independently and eventually merge them back. I would also like to be able to check out a piece of code from this big project and import it with versioning into a separate project. If I may changes I'd like to be able to merge them back to the original project. Based on my understanding git subtree can do this. http://github.com/apenwarr/git-subtree There is an example that is along the lines of what I'm trying to do at: http://psionides.jogger.pl/2010/02/04/sharing-code-between-projects-with-git-subtree/ Say the trunk of my project contained the directories: (bib bin cfg data fig src todo). When I use git subtree split -P bib -b export git checkout export I get a the bib directory, plus all files that should have been ignored or considered binary based on .gitignore such as the src directory and everything in it that ends in a tilde or the ./data directory. dwickrama@DWwork:~/research/trunk$ ls * -r biblography.bib JabRef src: script1.sh~ README~ script2.sh~ script3.sh~ script4.R~ script5.awk~ script5.py~ cfg: cfgFile1.ini~ cfgFile2.ini~ cfgFile3.ini~ bin: bigBinaryPackage1 bigBinaryPackage2 dwickrama@DWwork:~/research/trunk$ My .gitignore file is as follows: *.doc diff=word *.tex diff=tex *.bib diff=bibtex *.py diff=python *.eps binary *.jpg binary *.png binary ./bin/* binary *~ How do I prevent this?

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  • Faster way to transfer table data from linked server

    - by spender
    After much fiddling, I've managed to install the right ODBC driver and have successfully created a linked server on SQL Server 2008, by which I can access my PostgreSQL db from SQL server. I'm copying all of the data from some of the tables in the PgSQL DB into SQL Server using merge statements that take the following form: with mbRemote as ( select * from openquery(someLinkedDb,'select * from someTable') ) merge into someTable mbLocal using mbRemote on mbLocal.id=mbRemote.id when matched /*edit*/ /*clause below really speeds things up when many rows are unchanged*/ /*can you think of anything else?*/ and not (mbLocal.field1=mbRemote.field1 and mbLocal.field2=mbRemote.field2 and mbLocal.field3=mbRemote.field3 and mbLocal.field4=mbRemote.field4) /*end edit*/ then update set mbLocal.field1=mbRemote.field1, mbLocal.field2=mbRemote.field2, mbLocal.field3=mbRemote.field3, mbLocal.field4=mbRemote.field4 when not matched then insert ( id, field1, field2, field3, field4 ) values ( mbRemote.id, mbRemote.field1, mbRemote.field2, mbRemote.field3, mbRemote.field4 ) WHEN NOT MATCHED BY SOURCE then delete; After this statement completes, the local (SQL Server) copy is fully in sync with the remote (PgSQL server). A few questions about this approach: is it sane? it strikes me that an update will be run over all fields in local rows that haven't necessarily changed. The only prerequisite is that the local and remote id field match. Is there a more fine grained approach/a way of constraining the merge statment to only update rows that have actually changed?

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  • SVN Workflow - Chicken Before the Egg - Before merging V1 with V2, I need code from V1 to work on V2

    - by Jake
    Hi, Our distributed team (3 internal devs and 3+ external devs) use SVN to manage our codebase for a web site. We have a branch for each minor version (4.1.0, 4.1.1, 4.1.2, etc...). We have a trunk which we merge each version into when we do a release and publish to our site. An example of the problem we are having is thus: A new feature is added, lets call it "Ability to Create A Project" to 4.1.1. Another feature which depends on the one in 4.1.1 is scheduled to go in 4.1.2, called "Ability to Add Tasks to Projects". So, on Monday, we say 4.1.1 is 'closed' and needs to be tested. Our remote developers usually will start working on features/tickets for 4.1.2 at this point. Throughout the week we will test 4.1.1 and fix any bugs and commit them back to 4.1.1. Then, on Friday or so, we will tag 4.1.1, merge it with trunk, and finally, merge it with 4.1.2. But, for the 4-5 days we are testing, 4.1.2 doesn't have the code from 4.1.1 that some of the new features for 4.1.2 depend on. So a dev who is adding the "Ability to Add Tasks To Projects" feature, doesn't have the "Ability to Create a Project" feature to build upon, and has to do some file copy shenanigans to be able to keep working on it. What could/should we do to smooth out this process? P.S. Apologies if this question has been asked before - I did search but couldn't find what I'm looking for.

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  • Tools for Maintaining Branches in SVN

    - by Chris Conway
    My team uses SVN for source control. Recently, I've been working on a branch with occasional merges from the trunk and it's been a fairly annoying experience (cf. Joel Spolsky's "Subversion Story #1"), so I've been looking alternative ways to manage branches and merging. Given that a centralized SVN repository is non-negotiable, what I'd like is a set of tools that satisfy the following conditions. Complete revision history should be stored in SVN for both trunk and branches. Merging in either direction (and potentially criss-crossing) should be relatively painless. Merging history should be stored in SVN to the greatest extent possible. I've looked at both git-svn and bzr-svn and neither seems to be up to the job—basically, given the revision history they can export from the SVN repository, they can't seem to do any better a job handling merges than SVN can. For example, after cloning the repository with git, the revision history for my branch shows the original branch off of trunk, but git doesn't "see" any of the interim SVN merges as "native" merges—the revision history is one long line. As a result, any attempts to merge from trunk in git yield just as many conflicts as an SVN merge would. (Besides, the git-svn documentation explicitly warns against using git to merge between branches.) Is there a way to adjust my workflow to make git satisfy the above requirements? Maybe I just need tips or tricks (or a separate merging tool?) to help SVN be better at merging into branches?

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  • git pull not working

    - by dorelal
    I am not using github. We have git setup on our machine. I created a branch from master called experiment. However when I am trying to do git pull I am getting following message. > git pull You asked me to pull without telling me which branch you want to merge with, and 'branch.experiment.merge' in your configuration file does not tell me either. Please specify which branch you want to merge on the command line and try again (e.g. 'git pull <repository> <refspec>'). See git-pull(1) for details. Here is result of git remote show origin > git remote show origin * remote origin Fetch URL: ssh://git.domain.com/var/git/app.git Push URL: ssh://git.domain.com/var/git/app.git HEAD branch: master Remote branches: experiment tracked master tracked Local branches configured for 'git pull': master merges with remote master Local refs configured for 'git push': experiment pushes to experiment (local out of date) master pushes to master (up to date) As I read the message above experiment is mapped to origin/experiment. And my local repository knows that it is out of date. Then why I am not able to do git pull?

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  • When and how should independent hierarchies be used in clojure?

    - by Rob Lachlan
    Clojure's system for creating an ad hoc hierarchy of keywords is familiar to most people who have spent a bit of time with the language. For example, most demos and presentations of the language include examples such as (derive ::child ::parent) and they go on to show how this can be used for multi-method dispatch. In all of the slides and presentations that I've seen, they use the global hierarchy. But it is possible to put keyword relationships in independent hierarchies, by using (derive h ::child ::parent), where h is created by (make-hierarchy). Some questions, therefore: Are there any guidelines on when this is useful or necessary? Are there any functions for manipulating hierarchies? Merging is particularly useful, so I do this: (defn merge-h [& hierarchies] (apply merge-with (cons #(merge-with clojure.set/union %1 %2) hierarchies)) But I was wondering if such functions already exist somewhere. EDIT: Changed "custom" hierarchy to "independent" hierarchy, since that term better describes this animal. Also, I've done some research and included my own answer below. Further comments are welcome.

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  • git stash blunder:

    - by Chirag Patel
    I did a git stash pop and ended up with merge conflicts. I removed the files from the file system and did a git checkout as shown below, but it thinks the files are still unmerged. I then tried replacing the files and doing a git checkout again and same result. I event tried forcing it with -f flag. Any help would be appreciated! chirag-patels-macbook-pro:haloror patelc75$ git status app/views/layouts/_choose_patient.html.erb: needs merge app/views/layouts/_links.html.erb: needs merge # On branch prod-temp # Changes to be committed: # (use "git reset HEAD <file>..." to unstage) # # modified: db/schema.rb # # Changed but not updated: # (use "git add <file>..." to update what will be committed) # (use "git checkout -- <file>..." to discard changes in working directory) # # unmerged: app/views/layouts/_choose_patient.html.erb # unmerged: app/views/layouts/_links.html.erb chirag-patels-macbook-pro:haloror patelc75$ git checkout app/views/layouts/_choose_patient.html.erb error: path 'app/views/layouts/_choose_patient.html.erb' is unmerged chirag-patels-macbook-pro:haloror patelc75$ git checkout -f app/views/layouts/_choose_patient.html.erb warning: path 'app/views/layouts/_choose_patient.html.erb' is unmerged

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  • What makes merging in DVCS easy?

    - by afriza
    I read at Joel on Software: With distributed version control, the distributed part is actually not the most interesting part. The interesting part is that these systems think in terms of changes, not in terms of versions. and at HgInit: When we have to merge, Subversion tries to look at both revisions—my modified code, and your modified code—and it tries to guess how to smash them together in one big unholy mess. It usually fails, producing pages and pages of “merge conflicts” that aren’t really conflicts, simply places where Subversion failed to figure out what we did. By contrast, while we were working separately in Mercurial, Mercurial was busy keeping a series of changesets. And so, when we want to merge our code together, Mercurial actually has a whole lot more information: it knows what each of us changed and can reapply those changes, rather than just looking at the final product and trying to guess how to put it together. By looking at the SVN's repository folder, I have the impression that Subversion is maintaining each revisions as changeset. And from what I know, Hg is using both changeset and snapshot while Git is purely using snapshot to store the data. If my assumption is correct, then there must be other ways that make merging in DVCS easy. What are those?

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  • Thinking Sphinx with a date range

    - by Leddo
    Hi, I am implementing a full text search API for my rails apps, and so far have been having great success with Thinking Sphinx. I now want to implement a date range search, and keep getting the "bad value for range" error. Here is a snippet of the controller code, and i'm a bit stuck on what to do next. @search_options = { :page => params[:page], :per_page => params[:per_page]||50 } unless params[:since].blank? # make sure date is in specified format - YYYY-MM-DD d = nil begin d = DateTime.strptime(params[:since], '%Y-%m-%d') rescue raise ArgumentError, "Value for since parameter is not a valid date - please use format YYYY-MM-DD" end @search_options.merge!(:with => {:post_date => d..Time.now.utc}) end logger.info @search_options @posts = Post.search(params[:q], @search_options) When I have a look at the log, I am seeing this bit which seems to imply the date hasn't been converted into the same time format as the Time.now.utc. withpost_date2010-05-25T00:00:00+00:00..Tue Jun 01 17:45:13 UTC 2010 Any ideas? Basically I am trying to have the API request pass in a "since" date to see all posts after a certain date. I am specifying that the date should be in the YYYY-MM-DD format. Thanks for your help. Chris EDIT: I just changed the date parameters merge statement to this @search_options.merge!(:with = {:post_date = d.to_date..DateTime.now}) and now I get this error undefined method `to_i' for Tue, 25 May 2010:Date So obviously there is something still not setup right...

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  • How to push a new feature to a central Mercurial repo?

    - by Sly
    I'm assigned the development of a feature for a project. I'm going to work on that feature for several days over a period of a few weeks. I'll clone the central repo. Then I'm going to work locally for 3 weeks. I'll commit my progress to my repo several times during that process. When I'm done, I'm going to pull/merge/commit before I push. What is the right way push my feature as a single changeset to the central repo? I don't want to push 14 "work in progress" changesets and 1 "merged" changeset to the central repo. I want other collaborators on the project to see only one changeset with a significant commit message (such as "Implemented feature ABC"). I'm new to Mercurial and DVCS so don't hesitate to provide guidance if you think I'm not approaching that the right way. <My own answer> So far I came up with a way of reducing 15 changeset to 2 changeset. Suppose changesets 10 to 24 are "work in progress" changesets. I can 'hg collapse -r 10:24 -m "Implemented feature ABC"' (14 changesets collapsed into 1). Then, I must 'hg pull' + 'hg merge' + 'hg commit -m "Merged with most recent changes"'. But now I'm stuck with 2 changesets. I can no longer 'hg collapse', because pull/merge/commit broke my changeset sequence. Of course 2 changesets is better then 15 but still, I'd rather have 1 changeset. </My own answer>

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  • question about mergesort

    - by davit-datuashvili
    i have write code on mergesort here is code public class mergesort{ public static int a[]; public static void merges(int work[],int low,int high){ if (low==high) return ; else{ int mid=(low+high)/2; merges(work,low,mid); merges(work,mid+1,high); merge(work,low,mid+1,high); } } public static void main(String[]args){ int a[]=new int[]{64,21,33,70,12,85,44,99,36,108}; merges(a,0,a.length-1); for (int i=0;i<a.length;i++){ System.out.println(a[i]); } } public static void merge(int work[],int low,int high,int upper){ int j=0; int l=low; int mid=high-1; int n=upper-l+1; while(low<=mid && high<=upper) if ( a[low]<a[high]) work[j++]=a[low++]; else work[j++]=a[high++]; while(low<=mid) work[j++]=a[low++]; while(high<=upper) work[j++]=a[high++]; for (j=0;j<n;j++) a[l+j]=work[j]; } } but it does nort work after compile this code here is mistake java.lang.NullPointerException at mergesort.merge(mergesort.java:45) at mergesort.merges(mergesort.java:12) at mergesort.merges(mergesort.java:10) at mergesort.merges(mergesort.java:10) at mergesort.merges(mergesort.java:10) at mergesort.main(mergesort.java:27)

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  • LINQ Joins - Performance

    - by Meiscooldude
    I am curious on how exactly LINQ (not LINQ to SQL) is performing is joins behind the scenes in relation to how Sql Server performs joins. Sql Server before executing a query, generates an Execution Plan. The Execution Plan is basically an Expression Tree on what it believes is the best way to execute the query. Each node provides information on whether to do a Sort, Scan, Select, Join, ect. On a 'Join' node in our execution plan, we can see three possible algorithms; Hash Join, Merge Join, and Nested Loops Join. Sql Server will choose which algorithm to for each Join operation based on expected number of rows in Inner and Outer tables, what type of join we are doing (some algorithms don't support all types of joins), whether we need data ordered, and probably many other factors. Join Algorithms: Nested Loop Join: Best for small inputs, can be optimized with ordered inner table. Merge Join: Best for medium to large inputs sorted inputs, or an output that needs to be ordered. Hash Join: Best for medium to large inputs, can be parallelized to scale linearly. LINQ Query: DataTable firstTable, secondTable; ... var rows = from firstRow in firstTable.AsEnumerable () join secondRow in secondTable.AsEnumerable () on firstRow.Field<object> (randomObject.Property) equals secondRow.Field<object> (randomObject.Property) select new {firstRow, secondRow}; SQL Query: SELECT * FROM firstTable fT INNER JOIN secondTable sT ON fT.Property = sT.Property Sql Server might use a Nested Loop Join if it knows there are a small number of rows from each table, a merge join if it knows one of the tables has an index, and Hash join if it knows there are a lot of rows on either table and neither has an index. Does Linq choose its algorithm for joins? or does it always use one?

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  • Create new or update existing entity at one go with JPA

    - by Alex R
    A have a JPA entity that has timestamp field and is distinguished by a complex identifier field. What I need is to update timestamp in an entity that has already been stored, otherwise create and store new entity with the current timestamp. As it turns out the task is not as simple as it seems from the first sight. The problem is that in concurrent environment I get nasty "Unique index or primary key violation" exception. Here's my code: // Load existing entity, if any. Entity e = entityManager.find(Entity.class, id); if (e == null) { // Could not find entity with the specified id in the database, so create new one. e = entityManager.merge(new Entity(id)); } // Set current time... e.setTimestamp(new Date()); // ...and finally save entity. entityManager.flush(); Please note that in this example entity identifier is not generated on insert, it is known in advance. When two or more of threads run this block of code in parallel, they may simultaneously get null from entityManager.find(Entity.class, id) method call, so they will attempt to save two or more entities at the same time, with the same identifier resulting in error. I think that there are few solutions to the problem. Sure I could synchronize this code block with a global lock to prevent concurrent access to the database, but would it be the most efficient way? Some databases support very handy MERGE statement that updates existing or creates new row if none exists. But I doubt that OpenJPA (JPA implementation of my choice) supports it. Event if JPA does not support SQL MERGE, I can always fall back to plain old JDBC and do whatever I want with the database. But I don't want to leave comfortable API and mess with hairy JDBC+SQL combination. There is a magic trick to fix it using standard JPA API only, but I don't know it yet. Please help.

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  • Using Mergesort to calculate number of inversions in C++

    - by Brown
    void MergeSort(int A[], int n, int B[], int C[]) { if(n > 1) { Copy(A,0,floor(n/2),B,0,floor(n/2)); Copy(A,floor(n/2),n-1,C,0,floor(n/2)-1); MergeSort(B,floor(n/2),B,C); MergeSort(C,floor(n/2),B,C); Merge(A,B,0,floor(n/2),C,0,floor(n/2)-1); } }; void Copy(int A[], int startIndexA, int endIndexA, int B[], int startIndexB, int endIndexB) { while(startIndexA < endIndexA && startIndexB < endIndexB) { B[startIndexB]=A[startIndexA]; startIndexA++; startIndexB++; } }; void Merge(int A[], int B[],int leftp, int rightp, int C[], int leftq, int rightq) //Here each sub array (B and C) have both left and right indices variables (B is an array with p elements and C is an element with q elements) { int i=0; int j=0; int k=0; while(i < rightp && j < rightq) { if(B[i] <=C[j]) { A[k]=B[i]; i++; } else { A[k]=C[j]; j++; inversions+=(rightp-leftp); //when placing an element from the right array, the number of inversions is the number of elements still in the left sub array. } k++; } if(i=rightp) Copy(A,k,rightp+rightq,C,j,rightq); else Copy(A,k,rightp+rightq,B,i,rightp); } I am specifically confused on the effect of the second 'B' and 'C' arguments in the MergeSort calls. I need them in there so I have access to them for Copy and and Merge, but

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  • Modified map2 (without truncation of lists) in F# - how to do it idiomatically?

    - by Maciej Piechotka
    I'd like to rewrite such function into F#: zipWith' :: (a -> b -> c) -> (a -> c) -> (b -> c) -> [a] -> [b] -> [c] zipWith' _ _ h [] bs = h `map` bs zipWith' _ g _ as [] = g `map` as zipWith' f g h (a:as) (b:bs) = f a b:zipWith f g h as bs My first attempt was: let inline private map2' (xs : seq<'T>) (ys : seq<'U>) (f : 'T -> 'U -> 'S) (g : 'T -> 'S) (h : 'U -> 'S) = let xenum = xs.GetEnumerator() let yenum = ys.GetEnumerator() seq { let rec rest (zenum : IEnumerator<'A>) (i : 'A -> 'S) = seq { yield i(zenum.Current) if zenum.MoveNext() then yield! (rest zenum i) else zenum.Dispose() } let rec merge () = seq { if xenum.MoveNext() then if yenum.MoveNext() then yield (f xenum.Current yenum.Current); yield! (merge ()) else yenum.Dispose(); yield! (rest xenum g) else xenum.Dispose() if yenum.MoveNext() then yield! (rest yenum h) else yenum.Dispose() } yield! (merge ()) } However it can hardly be considered idiomatic. I heard about LazyList but I cannot find it anywhere.

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  • In Mercurial, can I apply changes from one file to another file in the same branch?

    - by Stephen
    In the good old days of Subversion, I would sometimes derive a new file from an existing one using svn copy. Then if something changed in sections they had in common, I could still use svn merge to update the derived version. To use the example from hginit.com, say the "guac" recipe already exists, and I want to create a "superguac" that includes instructions on how to serve guacamole to 1000 raving soccer fans. Using the process I just described, I could: svn cp guac superguac svn ci -m "Created superguac by copying guac" (edit superguac) svn ci -m "Added instructions for serving 1000 raving soccer fans to superguac" (edit guac) svn ci -m "Fixed a typo in guac" svn merge -r3:4 guac superguac and thus the typo fix would be applied to superguac. Mercurial provides an hg copy command that marks a file as a copy of the original, but I'm not sure the repository structure supports a similar workflow. Here's the same example, and I carefully only edit a single file in the commit I want to use in the merge: hg cp guac superguac hg ci -m "Created superguac by copying guac" (edit superguac) hg ci -m "Added instructions for serving 1000 raving soccer fans to superguac" (edit guac) hg ci -m "Fixed a typo in guac" I now want to apply the change in guac to superguac. Is that possible? If so, what's the right command? Is there a different workflow in Mercurial that achieves the same results (limited to a single branch)?

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  • JPA returning null for deleted items from a set

    - by Jon
    This may be related to my question from a few days ago, but I'm not even sure how to explain this part. (It's an entirely different parent-child relationship.) In my interface, I have a set of attributes (Attribute) and valid values (ValidValue) for each one in a one-to-many relationship. In the Spring MVC frontend, I have a page for an administrator to edit these values. Once it's submitted, if any of these fields (as <input> tags) are blank, I remove the ValidValue object like so: Set<ValidValue> existingValues = new HashSet<ValidValue>(attribute.getValidValues()); Set<ValidValue> finalValues = new HashSet<ValidValue>(); for(ValidValue validValue : attribute.getValidValues()) { if(!validValue.getValue().isEmpty()) { finalValues.add(validValue); } } existingValues.removeAll(finalValues); for(ValidValue removedValue : existingValues) { getApplicationDataService().removeValidValue(removedValue); } attribute.setValidValues(finalValues); getApplicationDataService().modifyAttribute(attribute); The problem is that while the database is updated appropriately, the next time I query for the Attribute objects, they're returned with an extra entry in their ValidValue set -- a null, and thus, the next time I iterate through the values to display, it shows an extra blank value in the middle. I've confirmed that this happens at the point of a merge or find, at the point of "Execute query ReadObjectQuery(entity.Attribute). Here's the code I'm using to modify the database (in the ApplicationDataService): public void modifyAttribute(Attribute attribute) { getJpaTemplate().merge(attribute); } public void removeValidValue(ValidValue removedValue) { ValidValue merged = getJpaTemplate().merge(removedValue); getJpaTemplate().remove(merged); } Here are the relevant parts of the entity classes: Entity @Table(name = "attribute") public class Attribute { @OneToMany(cascade = CascadeType.ALL, fetch = FetchType.LAZY, mappedBy = "attribute") private Set<ValidValue> validValues = new HashSet<ValidValue>(0); } @Entity @Table(name = "valid_value") public class ValidValue { @ManyToOne(fetch = FetchType.LAZY) @JoinColumn(name = "attr_id", nullable = false) private Attribute attribute; }

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  • Is this a situation where I should "hg push -f"?

    - by user144182
    I have two machines, A and B that both access an external hg repository. I did some development on A, wasn't ready to push changesets to the external, and needed to switch machines, so I pushed the changesets to B using hg serve. Changesets continued on B, were committed and then pushed to external repo. I then pulled on A and updated to default/tip. This left the local changesets that had previously been pushed to B as a branch, but because of how I pushed things around, the changes in the local changesets are already in default/tip. I've now continued to make changes and commit locally on A, but when I try to push hg asks me to merge or do push -f instead. I know push -f is almost never recommended. This situation is close to one where I should use rebase, however the changesets that would be "rebased" I don't really need locally or in the external repository since they are already effectively in default/tip via the push to B. Now, I know I could merge with the latest local changeset and just discard the changes, but then I would still have to commit the merge which gets me back into rebase territory. Is this a case where I could do hg push -f? Also, why would pushing from A create remote heads if I've updated to default/tip before I continued to commit changesets?

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  • Git Svn dcommit error - restart the commit

    - by Rob Wilkerson
    Last week, I made a number of changes to my local branch before leaving town for the weekend. This morning I wanted to dcommit all of those changes to the company's Svn repository, but I get a merge conflict in one file: Merge conflict during commit: Your file or directory 'build.properties.sample' is probably out-of-date: The version resource does not correspond to the resource within the transaction. Either the requested version resource is out of date (needs to be updated), or the requested version resource is newer than the transaction root (restart the commit). I'm not sure exactly why I'm getting this, but before attempting to dcommit, I did a git svn rebase. That "overwrote" my commits. To recover from that, I did a git reset --hard HEAD@{1}. Now my working copy seems to be where I expect it to be, but I have no idea how to get past the merge conflict; there's not actually any conflict to resolve that I can find. Any thoughts would be appreciated. EDIT: Just wanted to specify that I am working locally. I have a local branch for the trunk that references svn/trunk (the remote branch). All of my work was done on the local trunk: $ git branch maint-1.0.x master * trunk $ git branch -r svn/maintenance/my-project-1.0.0 svn/trunk Similarly, git log currently shows 10 commits on my local trunk since the last commit with a Svn ID. Hopefully that answers a few questions. Thanks again.

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