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  • How to enable 'wget' to download the whole content of HTML with Javascript

    - by neversaint
    I have a site which I want to download using Unix wget. If you look at the source code and content of the file it contain section called SUMMARY. However after issuing a wget command like this: wget -O downdloadedtext.txt http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=mouse&c=gene&a=fiche&l=2610008E11Rik The content of the downdloadedtext.txt is incomplete and different with the source code of that site. For example it doesn't contain SUMMARY section. Is there a correct way to obtain the full content correctly? The reason I ask this because I want to automate the download from different values in that HTML.

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  • gcc compilations (sometimes) result in cpu underload

    - by confusedCoder
    I have a larger C++ program which starts out by reading thousands of small text files into memory and storing data in stl containers. This takes about a minute. Periodically, a compilation will exhibit behavior where that initial part of the program will run at about 22-23% CPU load. Once that step is over, it goes back to ~100% CPU. It is more likely to happen with O2 flag turned on but not consistently. It happens even less often with the -p flag which makes it almost impossible to profile. I did capture it once but the gprof output wasn't helpful - everything runs with the same relative speed just at low cpu usage. I am quite certain that this has nothing to do with multiple cores. I do have a quad-core cpu, and most of the code is multi-threaded, but I tested this issue running a single thread. Also, when I run the problematic step in multiple threads, each thread only runs at ~20% CPU. I apologize ahead of time for the vagueness of the question but I have run out of ideas as to how to troubleshoot it further, so any hints might be helpful. UPDATE: Just to make sure it's clear, the problematic part of the code does sometimes (~30-40% of the compilations) run at 100% CPU, so it's hard to buy the (otherwise reasonable) argument that I/O is the bottleneck

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  • How to create a bash function with variable parameters/arguments to grep several keywords/tags

    - by CornSmith
    I'm using the :!grep "tag1" filename | grep "tag2" filename | grep -n "tag3 or more" filename command in vim to search for my code snippets based on their tags (a simple comment at the top of a snippet) in one big file. I use snippets to remember tricky things. This is painful to write out each time. I'd like to make an alias, or function to do something like this: :!greptag tag1 tag2 ... tag39 And it should search the current doc and return the lines with all the tags on them. Vim is set to interactive shell mode so that it can parse my bashrc for aliases/functions. set shellcmdflag=-ic How can I construct a function that allows for variable arguments like this in bash?

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  • Passwordless SSH using cgi-perl script

    - by AV
    Hello, This is my first shot at trying out cgi-perl scripts. I have SSH keys set up between my (root user) local machine and a remote machine. I'm trying to run a command on the remote box and display the output on a webpage hosted from my local machine. The script runs fine from command line however, it throws SSH key error when called from the webpage because the user running the script is apache and not root. Is there a way to get around this issue?

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  • Appending rather than overwriting files when moving

    - by ukas1
    I have the following directory structure: +-archive +-a +-data.txt +-b +-data.txt +-incoming +-a +-data.txt +-c +-data.txt How do I do the equivalent of mv incoming/* archive/ but have the contents of the files in incoming appended to those in archive rather than overwrite them?

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  • Shell Screen -X Stuff problems

    - by user1621988
    OPTIONS="java -Xms1024M -Xmx1024M -jar craftbukkit.jar" PROCESS=server01 screen -dmS $PROCESS $OPTIONS nogui # Starting the application screen -x $PROCESS -X stuff `printf "stop\r"` # Closing the application screen -x $PROCESS # Attaching to the terminal of the application Starting the application work fine, however I got problems with stuff 'printf "stop/r"' It seems not to work when I just start up, wait some time and then try to Stop it with command above. But the strange thing is, that IF I did screen -x $PROCESS and detach (ctrl-A & ctrl-D) and then I use the Stop command it does work. So is there a way around to stuff printf without -screen -x the $PROCESS? Thank You in Advance

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  • I wrote a new X11 keyboard layout file, how do I get my system to recognize it?

    - by grimborg
    I like to configure my keys my way, so I wrote a keyboard symbols file and I put it in /usr/share/X11/xkb/symbols/cat I use it by running setxkbmap cat -variant dvorak (and it works), but it doesn't show up in the console configuration (dpkg-reconfigure console-setup) nor in the Gnome keyboard settings... nor anywhere else, so I have to run setxkbmap every time. I suppose that I have to register it somewhere, but where? Any hints? Thanks!

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  • Run FFmpeg from Shell Script

    - by Abs
    Hello all, I have found a useful shell script that shows all files in a directory recursively. Where it prints the file name echo "$i"; #Display File name. I would instead like to run an ffmpeg command on non MP3 files, how can I do this? I have very limited knowledge of shell scripts so I appreciate if I was spoon fed! :) //if file is NOT MP3 ffmpeg -i [the_file] -sameq [same_file_name_with_mp3_extension] //delete old file Here is the shell script for reference. DIR="." function list_files() { if !(test -d "$1") then echo $1; return; fi cd "$1" echo; echo `pwd`:; #Display Directory name for i in * do if test -d "$i" #if dictionary then list_files "$i" #recursively list files cd .. else echo "$i"; #Display File name fi done } if [ $# -eq 0 ] then list_files . exit 0 fi for i in $* do DIR="$1" list_files "$DIR" shift 1 #To read next directory/file name done

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  • Why is sys+user > real in "time command"?

    - by shadyabhi
    I have a program that uses pthread library to do the matrix multiplication of 500x500 matrix. Each thread calculates 50 rows of the matrix. When I run tiem command:- shadyabhi@shadyabhi-desktop:~$ time ./a.out real 0m0.383s user 0m0.810s sys 0m0.000s shadyabhi@shadyabhi-desktop:~$ How come sys+user is greater than real time?

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  • ubuntu 64 or 32 bit for macbook/vps?

    - by ajsie
    i've got macbook pro and wonder if i should use 64 or 32 bits ubuntu server? and then i've got a vps not hosted by med. how do i know what version to choose? how do you check how many bits your cpu i working with? can i use 64 on 32 and vice versa?

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  • Modify bash variables with sed

    - by Alexander Cska
    I am trying to modify a number of environmental variables containing predefined compiler flags. To do so, I tried using a bash loop that goes over all environmental variables listed with "env". for i in $(env | grep ipo | awk 'BEGIN {FS="="} ; { print $1 } ' ) do echo $(sed -e "s/-ipo/ / ; s/-axAVX/ /" <<< $i) done This is not working since the loop variable $i contains just the name of the environmental variable stored as a character string. I tried searching a method to convert a string into a variable but things started becoming unnecessary complicated. The basic problem is how to properly supply the environmental variable itself to sed. Any ideas how to properly modify my script are welcome. Thanks, Alex

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  • Howto plot two cumulative frequency graph together

    - by neversaint
    I have data that looks like this: #val Freq1 Freq2 0.000 178 202 0.001 4611 5300 0.002 99 112 0.003 26 30 0.004 17 20 0.005 15 20 0.006 11 14 0.007 11 13 0.008 13 13 ...many more lines.. Full data can be found here: http://dpaste.com/173536/plain/ What I intend to do is to have a cumulative graph with "val" as x-axis with "Freq1" & "Freq2" as y-axis, plot together in 1 graph. I have this code. But it creates two plots instead of 1. dat <- read.table("stat.txt",header=F); val<-dat$V1 freq1<-dat$V2 freq2<-dat$V3 valf1<-rep(val,freq1) valf2<-rep(val,freq2) valfreq1table<- table(valf1) valfreq2table<- table(valf2) cumfreq1=c(0,cumsum(valfreq1table)) cumfreq2=c(0,cumsum(valfreq2table)) plot(cumfreq1, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq1) plot(cumfreq2, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq2) What's the right way to approach this?

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  • change shell directory from a script?

    - by ajsie
    i want to make a script (to) that makes it easier for me to enter folders. so eg. if i type "to apache" i want it to change the current directory to /etc/apache2. however, when i use the "cd" command inside the script, it seems like it changes the path WITHIN the script, so the path in the shell has not changed. how could i make this work?

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  • How to avoid escaping by accident in PERL using system()?

    - by Brian
    I want to run some commands using the system() command, I do this way: execute_command_error("trash-put '/home/$filename'"); Where execute_command_error will report if there was an error with whatever system command it ran. I know I could just unlink the file using Perl commands, but I want to delete stuff using trash-put as it's a type of recycling program. My problem is that $filename will sometimes have apostrophes, quotes, and other weird characters in it that mess up the system command or Perl itself.

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  • What time function do I need to use with pthread_cond_timedwait?

    - by Vincent
    The pthread_cond_timedwait function needs an absolute time in a time timespec structure. What time function I'm suppose to use to obtain the absolute time. I saw a lot of example on the web and I found almost all time function used. (ftime, clock, gettimeofday, clock_gettime (with all possible CLOCK_...). The pthread_cond_timedwait uses an absolute time. Will this waiting time affected by changing the time of the machine? Also if I get the absolute time with one of the time function, if the time of the machine change between the get and the addition of the delta time this will affect the affect the wait time? Is there a possibility to wait for an event with a relative time instead?

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  • Solr automatic startup script

    - by Camran
    I have followed this tutorial: http://wiki.apache.org/solr/SolrJetty But I cant get it working. I don't know what to put in the etc/defaults/jetty file Does anybody know how to configure this? I have Ubuntu 9 Server. Thanks

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  • How to repair Java in Ubuntu after trying to switch to Java 6 using update-java-alternatives

    - by Kau-Boy
    I tried to switch from Java 5 to Java 6 using the "update-java-alternatives" command like explained on this page: https://help.ubuntu.com/community/Java But afterwards I get the following error when I tried to execute java: root@webserver:~# java Error occurred during initialization of VM Could not reserve enough space for object heap Could not create the Java virtual machine. I also tried to reinstall the java binaries using "apt-get" but I didn't succeed reinstalling it. I would like to post the "apt-get" errors, but unfortunately I don't know how to print out the error messages in English and not in German. My system is a Ubuntu 8.04 ROOT server. Here is the (Google translated) english text tring to install Java 6 again: root@server:~# apt-get install sun-java6-jdk Reading package lists ... Ready Dependency tree Reading state information ... Ready sun-java6-jdk is already the newest version. sun-java6-jdk set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 86 not upgraded. 1 not fully installed or removed. After this operation, 0B of additional disk space will be used. Set up a sun-java6-bin (6-03-0ubuntu2) ... Could not create the Java virtual machine. dpkg: error processing sun-java6-bin (- configure): Subprocess post-installation script returned error exit status 1 Errors were encountered while processing: sun-java6-bin E: Sub-process / usr / bin / dpkg returned an error code (1) I hope that this might help you helping me.

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  • how to identify process in kernel read func without using current->pid

    - by yoavstr
    my lecture wants us to build module where we need to identify each read process and where the same read process called twice on the same writer massage we should insert him to an queue who's we wake up when all readers have read I achieved this goal by by using list of pid's and boolean read/not_read inside each node but he decided to be nasty and require us to it with some argument from FILE struct can you please help me ?....

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  • ImageMagick bash script issue

    - by gAMBOOKa
    // This works convert ${path}${dst} -crop ${crop} ${path}${dst} // but when changed to this, it fails convert ${path}${src} -trim ${path}${dst} convert ${path}${dst} -crop ${crop} ${path}"pdf_"${dst} What am I doing wrong?

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  • Print a file skipping X lines in Bash

    - by Eduardo
    Hi I have a very long file which I want to print but skipping the first 1e6 lines for example. I look into the cat man page but I did not see nay option to do this. I am looking for a command to do this or a simple bash program. I know how to do it using a program in C but I want to do it using the common commands. Any way to do it? Thanks a lot in advance..

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