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  • how to replace strings in file based on values from another file? (example inside)

    - by thaold
    Hi, how to replace strings in file, based on values from another file. Example, 2 files - input, output input: 12345 1 output: (1,'a lot of text', 'some other info',0,null, 12345), (2,'a lot of text', 'some other info',0,null, 12345), (3,'a lot of text', 'some other info',0,null, 12345), (4,'a lot of text', 'some other info',0,null, 12345), (5,'a lot of text', 'some other info',0,null, 12345); Needs to be done: read values from file 'input', and replace all '12345' with '1' in file 'output'. Thanks for help in advance

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  • phpMyAdmin Cron to Delete Temporary Files

    - by JoeC
    I have a folder on my hosting which I periodically upload something to - /public_html/uploads - and I'd like to set up a cronjob through phpMyAdmin to empty it out on a regular basis. The current cron I have in pMA is find /public_html/uploads -maxdepth 1 -ctime 1 -exec rm -f {} \; (Ignore the fact that it's running every minute for now, it's so I can test it :) ) I know very little about what this command is actually doing, but it looks like "not very much". Can anyone help me fix it? :) Thanks.

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  • Create File Speedily From Individual Column

    - by neversaint
    I have a data that looks like this: -1 1:-0.394668 2:-0.794872 3:-1 4:-0.871341 5:0.9365 6:0.75597 1 1:-0.463641 2:-0.897436 3:-1 4:-0.871341 5:0.44378 6:0.121824 1 1:-0.469432 2:-0.897436 3:-1 4:-0.871341 5:0.32668 6:0.302529 -1 1:-0.241547 2:-0.538462 3:-1 4:-0.871341 5:0.9994 6:0.987166 1 1:-0.757233 2:-0.948718 3:-1 4:-0.871341 5:-0.33904 6:0.915401 1 1:-0.167147 2:-0.589744 3:-1 4:-0.871341 5:0.95078 6:0.991566 The first column is class, and next 6 columns are features. I want to create 6 files for individual features. For example feat1_file.txt will contain -1 1:-0.394668 1 1:-0.463641 ... 1 1:-0.757233 1 1:-0.167147 feat2_file.txt will contain -1 2:-0.794872 ... 1 2:-0.589744 and so on. I have a Perl code that does this but it is horribly slow. Is there a way to do it faster? Typically the input files will contain 100K lines. use strict; use Data::Dumper; use Carp; my $input = $ARGV[0] || "myinput.txt"; my $INFILE_file_name = $input; # input file name open ( INFILE, '<', $INFILE_file_name ) or croak "$0 : failed to open input file $INFILE_file_name : $!\n"; my $out1 = $input."_feat_1.txt"; my $out2 = $input."_feat_2.txt"; my $out3 = $input."_feat_3.txt"; my $out4 = $input."_feat_4.txt"; my $out5 = $input."_feat_5.txt"; my $out6 = $input."_feat_6.txt"; unlink($out1); unlink($out2); unlink($out3); unlink($out4); unlink($out5); unlink($out6); print "$out1\n"; while ( <INFILE> ) { chomp; my @els = split(/\s+/,$_); my $lbl = $els[0]; my $OUTFILE1_file_name = $out1; # output file name open ( OUTFILE1, '>>', $OUTFILE1_file_name ) or croak "$0 : failed to open output file $OUTFILE1_file_name : $!\n"; print OUTFILE1 "$lbl $els[1]\n"; close ( OUTFILE1 ); # close output file my $OUTFILE2_file_name = $out2; # output file name open ( OUTFILE2, '>>', $OUTFILE2_file_name ) or croak "$0 : failed to open output file $OUTFILE2_file_name : $!\n"; print OUTFILE2 "$lbl $els[2]\n"; close ( OUTFILE2 ); # close output file # Etc.. until OUTFILE 6 } close (INFILE);

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  • Parsing line with delimiter in Python

    - by neversaint
    I have lines of data which I want to parse. The data looks like this: a score=216 expect=1.05e-06 a score=180 expect=0.0394 What I want to do is to have a subroutine that parse them and return 2 values (score and expect) for each line. However this function of mine doesn't seem to work: def scoreEvalFromMaf(mafLines): for word in mafLines[0]: if word.startswith("score="): theScore = word.split('=')[1] theEval = word.split('=')[2] return [theScore, theEval] raise Exception("encountered an alignment without a score") Please advice what's the right way to do it?

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  • Drupal Multisite - Subdirectory, Shared Hosting

    - by derekerdmann
    I'm trying to set up Drupal multisite in a shared hosting environment. The main site's location looks like http://www.mysite.com/foo/bar/ and my goal is to create another site using the same database at http://www.mysite.com/foo/bar/drupal2. I've created a new folder in the sites directory called www.mysite.com.foo.bar.drupal2 and added the default.settings.php and settings.php files, configured correctly for the environment, and I've set up a symlink from the main site's root to the subdirectory, with this command: ln -s . drupal2 The problem is that when I go to http://www.mysite.com/foo/bar/drupal2, I just get the main site at http://www.mysite.com without triggering the installer. What do I need to change to get the multisite working?

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  • join 3 files by first Column with awk ?

    - by noinflection
    i have three similar files, they are all like this: File A ID1 Value1a ID2 Value2a . . . IDN Value2n and i want an output like this Output ID1 Value1a Value1b Value1c ID2 Value2a Value2b Value2c ..... IDN ValueNa ValueNb ValueNc Looking to the first line, i want value1A to be the value of id1 in fileA, value1B the value of id1 in fileB, and so on which each field and each line. I thougth it like a sql join. I've tried several things but none of them where even close.

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  • What's wrong with this statement in perl?

    - by benjamin button
    print "$_", join(',',sort keys %$h),"\n"; It's giving me an error below: Use of uninitialized value in string at missing_months.pl line 36. 1,10,11,12 this print statement is present in a for loop as below: foreach my $num ( sort keys %hash ) { my $h = $hash{$num}; print "$_", join(',',sort keys %$h),"\n"; }

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  • How do I use Perl to parse the output of the sqlplus command?

    - by benjamin button
    I have an SQL file which will give me an output like below: 10|1 10|2 10|3 11|2 11|4 . . . I am using this in a Perl script like below: my @tmp_cycledef = `sqlplus -s $connstr \@DLCycleState.sql`; after this above statement, since @tmp_cycledef has all the output of the SQL query, I want to show the output as: 10 1,2,3 11 2,4 How could I do this using Perl?

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  • How to handle inputs in a C shell program during exec

    - by hits_lucky
    I am currently writing my own shell program. This simple shell can just execute commands. When executing commands like vi or calc which require input from the terminal , the command is getting executed and is waiting for the input from the user. But I am unable to give any input on the screen. How should the input be handled during the fork and exec. Here is the piece of code which is executing commands: if((pid = fork()) < 0) { perror("Fork failed"); exit(errno); } if(pid == 0) { // Child process if(execvp(arguments[0], arguments) == -1) { child_status = errno; switch(child_status) { case ENOENT: printf(" command not found \n"); break; } exit(errno); } } else { // parent process int wait_stat; if(waitpid(pid , &wait_stat, WNOHANG) == -1) { printf(" waitpid failed \n"); return; } } } ~ Thanks,

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  • Why do I get strange output from Perl using SQL?

    - by benjamin button
    Here is my Perl code: foreach my $line (@tmp_field_validation) { chomp $line; my ($cycle_code,$cycle_month,$cycle_year)= split /\s*\|\s*/, $line; $cycle_code=~ s/^\s*(.*)\s*$/$1/; $cycle_month=~ s/^\s*(.*)\s*$/$1/; $cycle_year=~ s/^\s*(.*)\s*$/$1/; print "$line\n"; print "$cycle_code|$cycle_month|$cycle_year"; } Here is the output: 1 10 2009 1 10 2009|| What's wrong over here? I expected the pipes to be between the variables. Why are the pipes getting printed after all the three variables?

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  • Setting multiple jars in java classpath

    - by Chris Serra
    Is there a way to include all the jar files within a directory in the classpath? I'm trying java -classpath lib/*.jar:. my.package.Program and it is not able to find class files that are certainly in those jars. Do I need to add each jar file to the classpath separately?

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  • appending text to all files that starts with a string

    - by learner135
    How do I append a string to all the files in a directory that starts with a particular string? I tried, cat mysig >> F* But instead of appending contents of mysig to all files starting with F, it creates a file named "F*". Obviously wildcard doesn't seem to work. Any alternatives? Thanks in advance. Edit: Also how do I delete this newly created file "F*" safely?. Using rm F* would delete all the files starting with F which I wouldn't want.

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  • How do I list all cron jobs for all users?

    - by yukondude
    Is there a command or an existing script that will let me view all of a *NIX system's scheduled cron jobs at once? I'd like it to include all of the user crontabs, as well as /etc/crontab, and whatever's in /etc/cron.d. It would also be nice to see the specific commands run by run-parts in /etc/crontab. Ideally, I'd like the output in a nice column form and ordered in some meaningful way. I could then merge these listings from multiple servers to view the overall "schedule of events." I was about to write such a script myself, but if someone's already gone to the trouble...

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  • arbitrary input from stdin to shell

    - by python_noob
    So I have this existing command that accepts a single argument, but I need something that accepts the argument over stdin instead. A shell script wrapper like the following works, but as I will be allowing untrusted users to pass arbitrary strings on stdin, I'm wondering if there's potential for someone to execute arbitary commands on the shell. #!/bin/sh $CMD "`cat`" Obviously if $CMD has a vulnerability in the way it processes the argument there's nothing I can do, so I'm concerned stuff like this: Somehow allow the user to escape the double quotes and pass input into argument #2 of $CMD Somehow cause another arbitary command to run

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