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• Jobs with anacron won't run

  - by mareser

  I would like to run two bash scripts daily using anacron in order to backup some data. Unfortunately I can't figure out why said scripts are not executed. For test purposes I let cron execute the scripts and it worked fine. cat /etc/anacrontab gives # /etc/anacrontab: configuration file for anacron # See anacron(8) and anacrontab(5) for details. SHELL=/bin/sh PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin # These replace cron's entries 1 5 cron.daily nice run-parts --report /etc/cron.daily 7 10 cron.weekly nice run-parts --report /etc/cron.weekly @monthly 15 cron.monthly nice run-parts --report /etc/cron.monthly 1 5 TB_bak /bin/sh /home/vasco2/Dropbox/Scripts/backup_TB.sh 1 5 key_db_bak /bin/sh /home/vasco2/Dropbox/Scripts/bak_key_db.sh The output of ls ~/Dropbox/Scripts/ is backup_TB.sh bak_key_db.sh I use Linux Mint Katya. uname -a gives Linux vasco2 2.6.38-8-generic-pae #42-Ubuntu SMP Mon Apr 11 05:17:09 UTC 2011 i686 i686 i386 GNU/Linux I would be very happy if somebody could point me in the right direction on why those scripts won't get executed. P.S.: There is no anacron tag on superuser.com. Maybe somebody wants to change that.

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• how i can identify which process is making UDP traffic on linux?

  - by boos

  my machine is continously making udp dns traffic request. what i need to know is the PID of the process generating this traffic. The normal way in TCP connection is to use netstat/lsof and get the process associated at the pid. Is UDP the connection is stateles, so, when i call netastat/lsof i can see it only if the UDP socket is opened and it's sending traffic. I have tried with lsof -i UDP and with nestat -anpue but i cant be able to find wich process is doing that request because i need to call lsof/netstat exactly when the udp traffic is sended, if i call lsof/netstat before/after the udp datagram is sended is impossible to view the opened UDP socket. call netstat/lsof exactly when 3/4 udp packet is sended is IMPOSSIBLE. how i can identify the infamous process ? I have already inspected the traffic to try to identify the sended PID from the content of the packet, but is not possible to identify it from the contect of the traffic. anyone can help me ? I'm root on this machine FEDORA 12 Linux noise.company.lan 2.6.32.16-141.fc12.x86_64 #1 SMP Wed Jul 7 04:49:59 UTC 2010 x86_64 x86_64 x86_64 GNU/Linux

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• What is the difference between the Linux and Linux LVM partition type?

  - by ujjain

  Fdisk shows multiple partition types. What is the difference between choosing 83) Linux and 8e) Linux LVM? Choosing 83) Linux also works fine for using LVM, even creating a physical volume on /dev/sdb without a partition table works. Does picking a partition type in fdisk really matter? What is the difference in picking Linux or Linux LVM as partition type? [root@tst-01 ~]# fdisk /dev/sdb WARNING: DOS-compatible mode is deprecated. It's strongly recommended to switch off the mode (command 'c') and change display units to sectors (command 'u'). Command (m for help): l 0 Empty 24 NEC DOS 81 Minix / old Lin bf Solaris 1 FAT12 39 Plan 9 82 Linux swap / So c1 DRDOS/sec (FAT- 2 XENIX root 3c PartitionMagic 83 Linux c4 DRDOS/sec (FAT- 3 XENIX usr 40 Venix 80286 84 OS/2 hidden C: c6 DRDOS/sec (FAT- 4 FAT16 <32M 41 PPC PReP Boot 85 Linux extended c7 Syrinx 5 Extended 42 SFS 86 NTFS volume set da Non-FS data 6 FAT16 4d QNX4.x 87 NTFS volume set db CP/M / CTOS / . 7 HPFS/NTFS 4e QNX4.x 2nd part 88 Linux plaintext de Dell Utility 8 AIX 4f QNX4.x 3rd part 8e Linux LVM df BootIt 9 AIX bootable 50 OnTrack DM 93 Amoeba e1 DOS access a OS/2 Boot Manag 51 OnTrack DM6 Aux 94 Amoeba BBT e3 DOS R/O b W95 FAT32 52 CP/M 9f BSD/OS e4 SpeedStor c W95 FAT32 (LBA) 53 OnTrack DM6 Aux a0 IBM Thinkpad hi eb BeOS fs e W95 FAT16 (LBA) 54 OnTrackDM6 a5 FreeBSD ee GPT f W95 Ext'd (LBA) 55 EZ-Drive a6 OpenBSD ef EFI (FAT-12/16/ 10 OPUS 56 Golden Bow a7 NeXTSTEP f0 Linux/PA-RISC b 11 Hidden FAT12 5c Priam Edisk a8 Darwin UFS f1 SpeedStor 12 Compaq diagnost 61 SpeedStor a9 NetBSD f4 SpeedStor 14 Hidden FAT16 <3 63 GNU HURD or Sys ab Darwin boot f2 DOS secondary 16 Hidden FAT16 64 Novell Netware af HFS / HFS+ fb VMware VMFS 17 Hidden HPFS/NTF 65 Novell Netware b7 BSDI fs fc VMware VMKCORE 18 AST SmartSleep 70 DiskSecure Mult b8 BSDI swap fd Linux raid auto 1b Hidden W95 FAT3 75 PC/IX bb Boot Wizard hid fe LANstep 1c Hidden W95 FAT3 80 Old Minix be Solaris boot ff BBT 1e Hidden W95 FAT1 Command (m for help):

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• Interactive console based CSV editor

  - by Penguin Nurse

  Although spreadsheet applications for editing CSV files on the console used to be one of the earliest killer applications for personal computers, only few of them and even less documentation about them is still actively maintained. After having done extensive search on the web, manpages and source code, I ended up with the following three applications that all have fundamental drawbacks: sc: abbrev. for spreadsheet calculator; nice tool with vi keybings, but it does not put strings containing the delimiter into quotas when exporting to delimiter separated format and can't import csv files correctly, i.e. all numbers are interpreted as strings GNU oleo: doesn't seem to be actively maintained any longer since 2001 and there are therefore no packages for major linux distributions teapot: offers packages for various operating systems, but uses for example counter-intuitive naming for cells (numbers for row and column, i.e. 11 seems to be intended to be row 1, column 1) and superfluous code for FLTK GUI Various Emacs modes also do not quote strings containing the delimiter well or are require much more typing for entering the scaffold of a table. Therefore I would be very grateful for overcoming one of theses drawbacks or any hints towards another console based CSV editor. It actually needn't do any calculations just editing cells or column- and rowise.

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• nmap installation issue

  - by daasf

  vanilla centos with latest updates, installed gcc, and after ./configure:.... Configuration complete. Type make (or gmake on some *BSD machines) to compile. [root@winxp nmap-5.51]# make Makefile:375: makefile.dep: No such file or directory g++ -MM -I./liblua -I./libdnet-stripped/include -I./libpcre -I./libpcap -I./nbase - I./nsock/include -DHAVE_CONFIG_H -DNMAP_NAME=\"Nmap\" -DNMAP_URL=\"http://nmap.org\" - DNMAP_PLATFORM=\"x86_64-unknown-linux-gnu\" -DNMAPDATADIR=\"/usr/local/share/nmap\" - D_FORTIFY_SOURCE=2 main.cc nmap.cc targets.cc tcpip.cc nmap_error.cc utils.cc idle_scan.cc osscan.cc osscan2.cc output.cc payload.cc scan_engine.cc timing.cc charpool.cc services.cc protocols.cc nmap_rpc.cc portlist.cc NmapOps.cc TargetGroup.cc Target.cc FingerPrintResults.cc service_scan.cc NmapOutputTable.cc MACLookup.cc nmap_tty.cc nmap_dns.cc traceroute.cc portreasons.cc xml.cc nse_main.cc nse_utility.cc nse_nsock.cc nse_dnet.cc nse_fs.cc nse_nmaplib.cc nse_debug.cc nse_pcrelib.cc nse_binlib.cc nse_bit.cc > makefile.dep /bin/sh: g++: command not found make: *** [makefile.dep] Error 127 [root@winxp nmap-5.51]# yum install g++ -y Loaded plugins: fastestmirror Loading mirror speeds from cached hostfile * addons: mirror.ash.fastserv.com * base: centos.mirror.choopa.net * extras: mirror.trouble-free.net * updates: mirror.nexcess.net Setting up Install Process No package g++ available. Nothing to do [root@winxp nmap-5.51]#

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• uname -a gives wrong version of kernel in gentoo?

  - by freedrull

  Hi I'm running gentoo and doing uname -a gives the wrong kernel version. tony@P_P-o ~ $ uname -a Linux P_P-o 2.6.27-gentoo-r8 #12 SMP PREEMPT Sun Nov 8 19:46:59 PST 2009 i686 Genuine Intel(R) CPU T2060 @ 1.60GHz GenuineIntel GNU/Linux Running eix gentoo-sources shows that I have a later version than that installed: tony@P_P-o ~ $ eix gentoo-sources [U] sys-kernel/gentoo-sources Available versions: (2.6.16-r13) 2.6.16-r13!b!s (2.6.25-r9) 2.6.25-r9!b!s (2.6.26-r4) 2.6.26-r4!b!s (2.6.27-r8) 2.6.27-r8!b!s (2.6.27-r10) 2.6.27-r10!b!s (2.6.28-r5) 2.6.28-r5!b!s (2.6.28-r6) 2.6.28-r6!b!s (2.6.29-r5) 2.6.29-r5!b!s (2.6.29-r6) 2.6.29-r6!b!s (2.6.30) ~2.6.30!b!s (2.6.30-r3) ~2.6.30-r3!b!s (2.6.30-r4) 2.6.30-r4!b!s (2.6.30-r5) 2.6.30-r5!b!s (2.6.30-r6) 2.6.30-r6!b!s (2.6.30-r7) 2.6.30-r7!b!s (2.6.30-r8) 2.6.30-r8!b!s (2.6.31) ~2.6.31!b!s (2.6.31-r1) ~2.6.31-r1!b!s (2.6.31-r2) ~2.6.31-r2!b!s (2.6.31-r3) ~2.6.31-r3!b!s (2.6.31-r4) ~2.6.31-r4!b!s {build symlink ultra1} Installed versions: 2.6.27-r8(2.6.27-r8)!b!s(07:48:25 PM 06/19/2009)(-build -symlink) 2.6.28-r5(2.6.28-r5)!b!s(12:35:17 PM 06/08/2009)(-build -symlink) 2.6.29-r5(2.6.29-r5)!b!s(07:44:33 PM 06/19/2009)(-build -symlink) 2.6.30-r6(2.6.30-r6)!b!s(11:14:45 PM 10/02/2009)(-build -symlink) Homepage: http://dev.gentoo.org/~dsd/genpatches Description: Full sources including the Gentoo patchset for the 2.6 kernel tree What gives?

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• bind9 named.conf zones size limit

  - by mox601

  I am trying to set up a test environment on my local machine, and I am trying to start a DNS daemon that loads tha configuration from a named.conf.custom file. As long as the size of that file is like 3-4 zones, the bind9 daemon loads fine, but when i enter the config file i need (like 10000 lines long), bind can't startup and in the syslog i find this message: starting BIND 9.7.0-P1 -u bind Jun 14 17:06:06 cibionte-pc named[9785]: built with '--prefix=/usr' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--sysconfdir=/etc/bind' '--localstatedir=/var' '--enable-threads' '--enable-largefile' '--with-libtool' '--enable-shared' '--enable-static' '--with-openssl=/usr' '--with-gssapi=/usr' '--with-gnu-ld' '--with-dlz-postgres=no' '--with-dlz-mysql=no' '--with-dlz-bdb=yes' '--with-dlz-filesystem=yes' '--with-dlz-ldap=yes' '--with-dlz-stub=yes' '--with-geoip=/usr' '--enable-ipv6' 'CFLAGS=-fno-strict-aliasing -DDIG_SIGCHASE -O2' 'LDFLAGS=-Wl,-Bsymbolic-functions' 'CPPFLAGS=' Jun 14 17:06:06 cibionte-pc named[9785]: adjusted limit on open files from 1024 to 1048576 Jun 14 17:06:06 cibionte-pc named[9785]: found 1 CPU, using 1 worker thread Jun 14 17:06:06 cibionte-pc named[9785]: using up to 4096 sockets Jun 14 17:06:06 cibionte-pc named[9785]: loading configuration from '/etc/bind/named.conf' Jun 14 17:06:06 cibionte-pc named[9785]: /etc/bind/named.conf.saferinternet:1: unknown option 'zone' Jun 14 17:06:06 cibionte-pc named[9785]: loading configuration: failure Jun 14 17:06:06 cibionte-pc named[9785]: exiting (due to fatal error) Are there any limits on the file size bind9 is allowed to load?

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• All commands stopped working in centos 6.5

  - by Michael

  I have made a big mistake while removing some duplicate packages as it appears to be broken. yum 1036 rpm -e --nodeps glibc-2.12-1.132.el6_5.2.x86_64 1037 rpm -e --nodeps nscd-2.12-1.132.el6_5.2.x86_64 1038 rpm -e --nodeps glibc-common-2.12-1.132.el6_5.2.x86_64 1040 rpm -e --nodeps glibc-common-2.12-1.132.el6.x86_64 glibc-devel-2.12-1.132.el6.x86_64 glibc-headers-2.12-1.132.el6.x86_64 1041 rpm -e glibc.x86_64 1042 rpm -e --nodeps glibc.x86_64 The issue happened after doing 1042 step. None of commands work(including yum, rpm, ls, cp etc) and getting error /lib64/ld-linux-x86-64.so.2: bad ELF interpreter: No such file or directory I thought that installing glibc after removing all the current ones would help to resolve the duplicate package error :( Now I realised that it is used as the C library in the GNU system and most systems with the Linux kernel. It defines the "system calls" and other basic facilities such as open, malloc, printf, exit, etc. Is there any possible solutions other than reinstall? I have lost ssh access. Maybe anything can be done using rescue cd? Thanks

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• deploying war on tomcat fails to start

  - by Asghar

  i have a java application which uses JAX_WS when i deployed on my tomcat5 server . it is deployed successfully. but it fails to start SEVERE: WSSERVLET11: failed to parse runtime descriptor: java.lang.IllegalArgumentException: prefix cannot be "null" when creating a QName java.lang.IllegalArgumentException: prefix cannot be "null" when creating a QName at javax.xml.namespace.QName.<init>(xml-commons-apis-1.3.02.jar.so) at gnu.xml.stream.XMLParser.getAttributeName(libgcj.so.7rh) at com.sun.xml.ws.util.xml.XMLStreamReaderFilter.getAttributeName(XMLStreamReaderFilter.java:228) at com.sun.xml.ws.streaming.XMLStreamReaderUtil$AttributesImpl.<init>(XMLStreamReaderUtil.java:355) at com.sun.xml.ws.streaming.XMLStreamReaderUtil.getAttributes(XMLStreamReaderUtil.java:198) at com.sun.xml.ws.transport.http.DeploymentDescriptorParser.parseAdapters(DeploymentDescriptorParser.java:204) at com.sun.xml.ws.transport.http.DeploymentDescriptorParser.parse(DeploymentDescriptorParser.java:147) at com.sun.xml.ws.transport.http.servlet.WSServletContextListener.contextInitialized(WSServletContextListener.java:124) at org.apache.catalina.core.StandardContext.listenerStart(catalina-5.5.23.jar.so) at org.apache.catalina.core.StandardContext.start(catalina-5.5.23.jar.so) at org.apache.catalina.manager.ManagerServlet.start(catalina-manager-5.5.23.jar.so) at org.apache.catalina.manager.HTMLManagerServlet.start(catalina-manager-5.5.23.jar.so) at org.apache.catalina.manager.HTMLManagerServlet.doGet(catalina-manager-5.5.23.jar.so) at javax.servlet.http.HttpServlet.service(tomcat5-servlet-2.4-api-5.5.23.jar.so) at javax.servlet.http.HttpServlet.service(tomcat5-servlet-2.4-api-5.5.23.jar.so) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(catalina-5.5.23.jar.so) at org.apache.catalina.core.ApplicationFilterChain.doFilter(catalina-5.5.23.jar.so) at org.apache.catalina.core.StandardWrapperValve.invoke(catalina-5.5.23.jar.so) at org.apache.catalina.core.StandardContextValve.invoke(catalina-5.5.23.jar.so) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(catalina-5.5.23.jar.so) at org.apache.catalina.core.StandardHostValve.invoke(catalina-5.5.23.jar.so) at org.apache.catalina.valves.ErrorReportValve.invoke(catalina-5.5.23.jar.so) at org.apache.catalina.core.StandardEngineValve.invoke(catalina-5.5.23.jar.so) at org.apache.catalina.connector.CoyoteAdapter.service(catalina-5.5.23.jar.so) at org.apache.coyote.http11.Http11Processor.process(tomcat-http-5.5.23.jar.so) at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(tomcat-http-5.5.23.jar.so) at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(tomcat-util-5.5.23.jar.so) at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(tomcat-util-5.5.23.jar.so) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(tomcat-util-5.5.23.jar.so) at java.lang.Thread.run(libgcj.so.7rh)

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• How CPU communicates with HW

  - by b-gen-jack-o-neill

  Good day. I am new here, but I could not find answer to my question using google, so I help I do not violate any rules. So, basically, all I want to ask is, how CPU comminucates with other HW, such as printers, Graphic card, sound card, LAN card etc. I know, that for basic system I/O, you can use BIOS interrupts. INT 10h I believe is for display output. But, what I would like to know is, what actually happens when you execute instruction int 10h. From desription of int instruction, it should jump to routine, which is stored on adress pointed by adress stored in iterrupt table. But how does this routine get into the RAM? Does BIOS save that routines to the RAM? And what actually that routine does? I mean, CPU can only acess RAM, right? So how can now acess some other HW? Is there some special instrucion for it? Or is CPU somehow connected to BIOS, and than BIOS actually does the work? And the last thing, does even OS like Windows or GNU/Linux use BIOS interrupts, or can OS acess HW directly? Thanks.

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• Bash Parallelization of CPU-intensive processes

  - by ehsanul

  tee forwards its stdin to every single file specified, while pee does the same, but for pipes. These programs send every single line of their stdin to each and every file/pipe specified. However, I was looking for a way to "load balance" the stdin to different pipes, so one line is sent to the first pipe, another line to the second, etc. It would also be nice if the stdout of the pipes are collected into one stream as well. The use case is simple parallelization of CPU intensive processes that work on a line-by-line basis. I was doing a sed on a 14GB file, and it could have run much faster if I could use multiple sed processes. The command was like this: pv infile | sed 's/something//' > outfile To parallelize, the best would be if GNU parallel would support this functionality like so (made up the --demux-stdin option): pv infile | parallel -u -j4 --demux-stdin "sed 's/something//'" > outfile However, there's no option like this and parallel always uses its stdin as arguments for the command it invokes, like xargs. So I tried this, but it's hopelessly slow, and it's clear why: pv infile | parallel -u -j4 "echo {} | sed 's/something//'" > outfile I just wanted to know if there's any other way to do this (short of coding it up myself). If there was a "load-balancing" tee (let's call it lee), I could do this: pv infile | lee >(sed 's/something//' >> outfile) >(sed 's/something//' >> outfile) >(sed 's/something//' >> outfile) >(sed 's/something//' >> outfile) Not pretty, so I'd definitely prefer something like the made up parallel version, but this would work too.

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• Why can't I bind to 127.0.0.1 on Mac OS X?

  - by Noah Lavine

  Hello, I'm trying to set up a simple web server on Mac OS X, and I keep getting an error when I run bind. Here's what I'm running (this transcript uses GNU Guile, but just as a convenient interface to posix). (define addr (inet-aton "127.0.0.1")) ; get internal representation of 127.0.0.1 (define sockaddr (make-socket-address AF_INET addr 8080)) ; make a struct sockaddr (define sock (socket PF_INET SOCK_STREAM 0)) ; make a socket (bind sock sockaddr) ; bind the socket to the address That gives me the error In procedure bind: can't assign requested address. So I tried it again allowing any address. (define anyaddr (make-socket-address AF_INET INADDR_ANY 8080)) ; allow any address (bind sock anyaddr) And that works fine. But it's weird, because ifconfig lo0 says lo0: flags=8049<UP,LOOPBACK,RUNNING,MULTICAST> mtu 16384 inet6 ::1 prefixlen 128 inet6 fe80::1%lo0 prefixlen 64 scopeid 0x1 inet 127.0.0.1 netmask 0xff000000 So the loopback device is assigned to 127.0.0.1. So my question is, why can't I bind to that address? Thanks. Update: the output of route get 127.0.0.1 is route to: localhost destination: localhost interface: lo0 flags: <UP,HOST,DONE,LOCAL> recvpipe sendpipe ssthresh rtt,msec rttvar hopcount mtu expire 49152 49152 0 0 0 0 16384 0

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• Colorizing your terminal and shell environment?

  - by Stefan Lasiewski

  I spend most of my time working in Unix environments and using Terminal emulators. I try to use color on the commandline, because color makes the output more useful and intuitive. What are some good ways to add color to my terminal environment? What tricks do you do? What pitfals have you encountered? Unfortunately, support for color is wildly variable depending on terminal type, OS, TERM setting, utility, buggy implementations, etc. Here's what I do currently, after alot of experimentation: I tend to set 'TERM=xterm-color', which is supported on most hosts (but not all). I work on a number of different hosts, different OS versions, etc. I'm trying to keep things simple and generic, if possible. Many OSs set things like 'dircolors' and by default, and I don't want to modify this everywhere. So I try to stick with the defaults. Instead tweak my Terminal's color configuration. Use color for some unix commands (ls, grep, less, vim) and the Bash prompt. These commands seem to the standard "ANSI escape sequences" I've managed to find some settings which are widely supported, and which don't print gobbledygook characters in older environments (even FreeBSD4!) (For the most part). From my .bash_profile ### Color support # The Terminal application typically does 'export TERM=term=color' # Some terminal types will print Black, White & underlined with these settings. OS=`uname -s` case "$OS" in "SunOS" ) # Solaris9 ls doesn't allow color, so use special characters instead. LS_OPTS='-F' ;; "Linux" ) # GNU tools supports colors! See dircolors to customize colors export LS_OPTS='--color=auto' # Color support using 'less -R' alias less='less --RAW-CONTROL-CHARS' alias ls='ls ${LS_OPTS} export GREP_OPTIONS="--color=auto" ;; "Darwin"|"FreeBSD") # Most FreeBSD & Apple Darwin supports colors # LS_OPTS="-G" export CLICOLOR=true alias less='less --RAW-CONTROL-CHARS' export GREP_OPTIONS="--color=auto" ;; esac

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• Missing MB on a GPT partioned SSD

  - by pisswillis

  I recently installed Arch Linux on an Intel 40GB SSD. I used GPT for partioning (via GNU parted) and created the following partions: /dev/sda1 : 1 MB, no FS, flag=bios_grub /dev/sda2 : 30MB, /boot, ext2, flag=boot /dev/sda3 : 20GB, /home, ext4 /dev/sda4 : ~20GB, /, ext4 After struggling to install grub2 from the livecd environment (which I finally did via grub-install /dev/sda --root-directory=/mnt/ --no-floppy --force) I got a working system. However, when I was inspecting disk usage with df I noticed that my home partition had around 170MB of used space on it. This surprised me because the only things on /home were one users .bashrc, .bash_history, and .lesshst. du confirmed that there was only a few KB of space being used on /home. Why does df report approximately 170MB being used when du does not? Is this space "gone forever", or can I regain it by repartioning and/or reinstalling? When I installed grub2 it said something along the lines of "your embed area is too small", and that I could "use BLOCKLISTS, but BLOCKLISTS are UNRELIABLE". In the end the only way I could get a system booting from the SSD was to use blocklists via the grub-install --force flag. Is this related to the mysterious missing 170MB? Thanks

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• Spring-mvc project can't select from a particular mysql table

  - by Dan Ray

  I'm building a Spring-mvc project (using JPA and Hibernate for DB access) that is running just great locally, on my dev box, with a local MySQL database. Now I'm trying to put a snapshot up on a staging server for my client to play with, and I'm having trouble. Tomcat (after some wrestling) deploys my war file without complaint, and I can get some response from the application over the browser. When I hit my main page, which is behind Spring Security authentication, it redirects me to the login page, which works perfectly. I have Security configured to query the database for user details, and that works fine. In fact, a change to a password in the database is reflected in the behavior of the login form, so I'm confident it IS reaching the database and querying the user table. Once authenticated, we go to the first "real" page of the app, and I get a "data access failure" error. The server's console log gets this line (redacted): ERROR org.hibernate.util.JDBCExceptionReporter - SELECT command denied to user 'myDbUser'@'localhost' for table 'asset' However, if I go to MySQL from the shell using exactly the same creds, I have no problem at all selecting from the asset table: [development@tomcat01stg]$ mysql -u myDbUser -pmyDbPwd dbName ... mysql> \s -------------- mysql Ver 14.12 Distrib 5.0.77, for redhat-linux-gnu (i686) using readline 5.1 Connection id: 199 Current database: dbName Current user: myDbUser@localhost ... UNIX socket: /var/lib/mysql/mysql.sock -------------- mysql> select count(*) from asset; +----------+ | count(*) | +----------+ | 19 | +----------+ 1 row in set (0.00 sec) I've broken down my MySQL access settings, cleaned out the user and re-run the grant commands, set up a version of the user from 'localhost' and another from '%', making sure to flush permissions.... Nothing is changing the behavior of this thing. What gives?

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• MySQL is killing the server IO.

  - by OneOfOne

  I manage a fairly large/busy vBulletin forums (running on gigenet cloud), the database is ~ 10 GB (~9 milion posts, ~60 queries per second), lately MySQL have been grinding the disk like there's no tomorrow according to iotop and slowing the site. The last idea I can think of is using replication, but I'm not sure how much that would help and worried about database sync. I'm out of ideas, any tips on how to improve the situation would be highly appreciated. Specs : Debian Lenny 64bit ~12Ghz (6 cores) CPU, 7520gb RAM, 160gb disk. Kernel : 2.6.32-4-amd64 mysqld Ver 5.1.54-0.dotdeb.0 for debian-linux-gnu on x86_64 ((Debian)) Other software: vBulletin 3.8.4 memcached 1.2.2 PHP 5.3.5-0.dotdeb.0 (fpm-fcgi) (built: Jan 7 2011 00:07:27) lighttpd/1.4.28 (ssl) - a light and fast webserver PHP and vBulletin are configured to use memcached. MySQL Settings : [mysqld] key_buffer = 128M max_allowed_packet = 16M thread_cache_size = 8 myisam-recover = BACKUP max_connections = 1024 query_cache_limit = 2M query_cache_size = 128M expire_logs_days = 10 max_binlog_size = 100M key_buffer_size = 128M join_buffer_size = 8M tmp_table_size = 16M max_heap_table_size = 16M table_cache = 96 Other : > vmstat procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu---- r b swpd free buff cache si so bi bo in cs us sy id wa 9 0 73140 36336 8968 1859160 0 0 42 15 3 2 6 1 89 5 > /etc/init.d/mysql status Threads: 49 Questions: 252139 Slow queries: 164 Opens: 53573 Flush tables: 1 Open tables: 337 Queries per second avg: 61.302. Edit Additional info.

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• Replacing quotes in a file

  - by Matthijs

  I have a large number of large semicolon-separated data files. All string fields are surrounded by double quotes. In some of the files, there are extra quotes in the string fields, which messes up the subsequent importing of the data for analysis (I'm importing to Stata). This code allows me to see the problematic quotes using gnu-awk: echo '"This";"is";1;"line" of" data";""with";"extra quotes""' | awk 'BEGIN { FPAT = "([^;]+)|(\"[^\"]+\")"}; {for ( i=1 ; i<=NF ; i++ ) if ($i ~ /^"(.*".*)+"$/) {print NR, $i}}' 1 "line" of" data" 1 ""with" 1 "extra quotes"" but I do not know how to replace them. I was thinking of doing the replace manually, but it turns out that there are several hundred matches in some of the files. I know about awk's -sub-, -gsub-, and -match- functions, but I am not sure how to design a search and replace for this specific problem. In the example above, the respective fields should be "This", "is", 1, "line of data", "with", "extra quotes", that is: all semicolons are separators, and all quotes except for the outermost quotes should be removed. Should I may be use -sed-, or is -awk- the right tool? Hope you can help me out! Thanks, Matthijs

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• mkfs Operation Takes Very Long on Linux Software Raid 5

  - by Elmar Weber

  I've set-up a Linux software raid level 5 consisting of 4 * 2 TB disks. The disk array was created with a 64k stripe size and no other configuration parameters. After the initial rebuild I tried to create a filesystem and this step takes very long (about half an hour or more). I tried to create an xfs and ext3 filesystem, both took a long time, with mkfs.ext3 I observed the following behaviour, which might be helpful: writing inode tables runs fast until it reaches 1053 (~ 1 second), then it writes about 50, waits for two seconds, then the next 50 are written (according to the console display) when I try to cancel the operation with Control+C it hangs for half a minute before it is really canceled The performance of the disks individually is very good, I've run bonnie++ on each one separately with write / read values of around 95 / 110MB/s. Even when I run bonnie++ on every drive in parallel the values are only reduced by about 10 MB. So I'm excluding hardware / I/O scheduling in general as a problem source. I tried different configuration parameters for stripe_cache_size and readahead size without success, but I don't think they are that relevant for the file system creation operation. The server details: Linux server 2.6.35-27-generic #48-Ubuntu SMP x86_64 GNU/Linux mdadm - v2.6.7.1 Does anyone has a suggestion on how to further debug this?

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• Need help with local network printing while using VPN on Ubuntu 10.10 desktop

  - by MountainX

  I can print to my HP printer via the LAN when I'm not connected to the VPN. When connected to the VPN, printing fails. OpenVPN 2.1.0 x86_64-pc-linux-gnu [SSL] [LZO2] [EPOLL] [PKCS11] [MH] [PF_INET6] [eurephia] built on Jul 12 2010 I can ping the printer while connected to the VPN: $ ping 192.168.100.12 PING 192.168.100.12 (192.168.100.12) 56(84) bytes of data. 64 bytes from 192.168.100.12: icmp_req=1 ttl=255 time=9.17 ms --- 192.168.100.12 ping statistics --- 2 packets transmitted, 2 received, 0% packet loss... $ ping HpPrinter.local PING HpPrinter.local (192.168.100.12) 56(84) bytes of data. 64 bytes from HpPrinter.local (192.168.100.12): icmp_req=1 ttl=255 time=0.383 ms --- HpPrinter.local ping statistics --- 4 packets transmitted, 4 received, 0% packet loss... But here's the error when I try to print while connected to the VPN: hpijs[9990]: io/hpmud/jd.c 784: mdns lookup HpPrinter.local retry 1... ... hpijs[9990]: io/hpmud/jd.c 784: mdns lookup HpPrinter.local retry 20... hpijs[9990]: io/hpmud/jd.c 780: error timeout mdns lookup HpPrinter.local hpijs[9990]: io/hpmud/jd.c 88: unable to read device-id hp[9982]: io/hpmud/jd.c 784: mdns lookup HpPrinter.local retry 1... ... hp[9982]: io/hpmud/jd.c 784: mdns lookup HpPrinter.local retry 20... hp[9982]: io/hpmud/jd.c 780: error timeout mdns lookup HpPrinter.local hp[9982]: io/hpmud/jd.c 88: unable to read device-id hp[9982]: prnt/backend/hp.c 745: ERROR: open device failed stat=12: hp:/net/Officejet_Pro_L7600?zc=HpPrinter I am running iptables rules, but the problem doesn't appear related to the firewall. I've tested with no rules (i.e., no firewall). The printing problem happens when the VPN is connected. I can guess it is an mdns problem, but searching google about mdns didn't turn up anything that seemed related to this (at my level of knowledge). Any suggestions?

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• SSL connection hangs as client hello (curl, openssl client, apt-get, wget, everything)

  - by Niklas B

  Hi, I've run into a problem on my Debian VPS (a xen domU) regarding SSL. Namely almost all SSL connections hangs at client hello. For example: # curl -vI https://graph.facebook.com About to connect() to graph.facebook.com port 443 (#0) Trying 66.220.146.48... connected Connected to graph.facebook.com (66.220.146.48) port 443 (#0) successfully set certificate verify locations: CAfile: none CApath: /etc/ssl/certs SSLv3, TLS handshake, Client hello (1): It's the same when using the openssl client. However, some of the SSL traffic works (for example https://www.nordea.se). Server #uname -a Linux server.com 2.6.26-1-xen-amd64 #1 SMP Fri Mar 13 21:39:38 UTC 2009 x86_64 GNU/Linux It does however work on my Dom 0 (the main xen host). Apt-get I can't even run apt-get update with the debian security sources (hangs on reading headers) Open SSL At the begining I thought I had an old openssl client (0.9.8o-4) since I appeared to have a newer on the Dom 0 (0.9.8g-15+lenny8) but doing a manuanl update on the openssl deb didn't help. Open SSL Client This is the full output of when the openssl client hangs: http://pastebin.com/PAjwMap9 Closing thoughts I've Googled the crap out of this, and I'm not getting any further. I've seen problems with curl, apt-get etc. but they are all specific relating to the very application - not general for the system. Any thoughts?

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• Shared configuration for Eclipse on Debian server

  - by Joris Meys

  I've manually installed the latest Eclipse on our debian server and wanted to configure it so all users share the same configuration. It turned out less obvious than I thought: I don't seem to be able to install packages for all users. If I run it myself, all configuration data is saved under my own home directory. If I run Eclipse using sudo, everything is saved under the root directory but is not accessible for other users when they run Eclipse. I've been browsing the manual of Eclipse and some forums, but apart from a "yes, you can" I couldn't find any information on how that should be done. The biggest problem is installing plugins for all users to be found. Any help is greatly appreciated. Eclipse : 3.6.1 classic, installed using this procedure. Server uname: GNU/Linux * 2.6.26-2-amd64 Server is accessed using Putty, and Gnome desktop through realVNC. Just mentioning it if that is of any importance. Our sysadmin is on "prolonged leave" (working in Spain and never replaced), so I'm stuck without help here. EDIT : -- I asked this question also on StackOverflow as I wasn't certain this is a genuine server-related question. Please feel free to merge both questions at the appropriate place. --

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• Apache serving empty gzip with assets produced by Rails Asset Pipeline

  - by PizzaPill

  I followed the steps described on the blogpost The Asset Pipeline, from development to production and tweaked them to my environment. The two important files are: /etc/apache/site-available/example.com <VirtualHost *:80> ServerName example.com ServerAlias www.example.com DocumentRoot "/var/www/sites/example.com/current/public" ErrorLog "/var/log/apache2/example.com-error_log" CustomLog "/var/log/apache2/example.com-access_log" common <Directory "/var/www/sites/example.com/current/public"> Options All AllowOverride All Order allow,deny Allow from all </Directory> <Directory "/var/www/sites/example.com/current/public/assets"> AllowOverride All </Directory> <LocationMatch "^/assets/.*$"> Header unset Last-Modified Header unset ETag FileETag none ExpiresActive On ExpiresDefault "access plus 1 year" </LocationMatch> RewriteEngine On # Remove the www RewriteCond %{HTTP_HOST} ^www.example.com$ [NC] RewriteRule ^(.*)$ http://example.com/$1 [R=301,L] </VirtualHost> /var/www/sites/example.com/shared/assets/.htaccess RewriteEngine on RewriteCond %{HTTP:Accept-Encoding} \b(x-)?gzip\b RewriteCond %{REQUEST_FILENAME}.gz -s RewriteRule ^(.+) $1.gz [L] <FilesMatch \.css\.gz$> ForceType text/css Header set Content-Encoding gzip </FilesMatch> <FilesMatch \.js\.gz$> ForceType text/javascript Header set Content-Encoding gzip </FilesMatch> But apache seems to send empty gzip files because the testsite looses all styles and firebug doesnt find any content for the css files. Altough if I call the assets-path directly I get some gibberish that looks like binary data. If I move the htaccess-file everything is back to normal. How could I find out where/what went wrong or do you have any suggestions what error I made? > apache2 -v System: Server version: Apache/2.2.14 (Ubuntu) Server built: Mar 5 2012 16:42:17 > uname -a Linux node0 2.6.18-028stab094.3 #1 SMP Thu Sep 22 12:47:37 MSD 2011 x86_64 GNU/Linux

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• ubuntu dmidecode is not functioning properly

  - by Alaa Alomari

  dmidecode is giving irrelevant and conflicted results. it shows that i have two slots while the correct is 8 (the board is Tyan S5350.) uname -a Linux synd01 3.0.0-16-server #29-Ubuntu SMP Tue Feb 14 13:08:12 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux root@synd01:/home/badmin# dmidecode -t 16 dmidecode 2.9 SMBIOS 2.33 present. Handle 0x0011, DMI type 16, 15 bytes Physical Memory Array Location: System Board Or Motherboard Use: System Memory Error Correction Type: None Maximum Capacity: 4 GB Error Information Handle: Not Provided Number Of Devices: 2 while root@synd01:/home/badmin# dmidecode -t 17 | grep Size Size: No Module Installed Size: No Module Installed Size: 1024 MB Size: 1024 MB Size: No Module Installed Size: No Module Installed Size: 1024 MB Size: 1024 MB also lshw shows: *-memory description: System Memory physical id: 11 slot: System board or motherboard size: 4GiB *-bank:0 description: DIMM DDR Synchronous 166 MHz (6.0 ns) [empty] physical id: 0 slot: J3B1 clock: 166MHz (6.0ns) *-bank:1 description: DIMM DDR Synchronous 166 MHz (6.0 ns) [empty] physical id: 1 slot: J3B3 clock: 166MHz (6.0ns) *-bank:2 description: DIMM DDR Synchronous 166 MHz (6.0 ns) physical id: 2 slot: J2B2 size: 1GiB width: 64 bits clock: 166MHz (6.0ns) *-bank:3 description: DIMM DDR Synchronous 166 MHz (6.0 ns) physical id: 3 slot: J2B4 size: 1GiB width: 64 bits clock: 166MHz (6.0ns) *-bank:4 description: DIMM DDR Synchronous 166 MHz (6.0 ns) [empty] physical id: 4 slot: J3B2 clock: 166MHz (6.0ns) *-bank:5 description: DIMM DDR Synchronous 166 MHz (6.0 ns) [empty] physical id: 5 slot: J2B1 clock: 166MHz (6.0ns) *-bank:6 description: DIMM DDR Synchronous 166 MHz (6.0 ns) physical id: 6 slot: J2B3 size: 1GiB width: 64 bits clock: 166MHz (6.0ns) *-bank:7 description: DIMM DDR Synchronous 166 MHz (6.0 ns) physical id: 7 slot: J1B1 size: 1GiB width: 64 bits clock: 166MHz (6.0ns) what might cause this conflict and how can i fix it? Thanks

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• ubuntu 10.04 + php + postfix

  - by mononym

  I have a server I am running: Ubuntu 10.04 php 5.3.5 (fpm) Nginx I have installed postfix, and set it to loopback-only (only need to send) The problem is it is not sending. if i issue (at command line): echo "testing local delivery" | mail -s "test email to localhost" [email protected] I get the email no problem, but through PHP it does not arrive. When I send it via PHP, mail.log shows: Mar 28 10:15:04 host postfix/pickup[32102]: 435EF580D7: uid=0 from=<root> Mar 28 10:15:04 host postfix/cleanup[32229]: 435EF580D7: message-id=<20120328091504.435EF580D7@FQDN> Mar 28 10:15:04 host postfix/qmgr[32103]: 435EF580D7: from=<root@FQDN>, size=1127, nrcpt=1 (queue active) Mar 28 10:15:04 host postfix/local[32230]: 435EF580D7: to=<root@FQDN>, orig_to=<root>, relay=local, delay=3.1, delays=3/0.01/0/0.09, dsn=2.0.0, status=sent (delivered to maildir) Mar 28 10:15:04 host postfix/qmgr[32103]: 435EF580D7: removed any help appreciated, my main.cf file: smtpd_banner = $myhostname ESMTP $mail_name (Debian/GNU) biff = no # appending .domain is the MUA's job. append_dot_mydomain = no # Uncomment the next line to generate "delayed mail" warnings #delay_warning_time = 4h readme_directory = no # TLS parameters smtpd_tls_cert_file=/etc/ssl/certs/ssl-cert-snakeoil.pem smtpd_tls_key_file=/etc/ssl/private/ssl-cert-snakeoil.key smtpd_use_tls=yes smtpd_tls_session_cache_database = btree:${data_directory}/smtpd_scache smtp_tls_session_cache_database = btree:${data_directory}/smtp_scache # See /usr/share/doc/postfix/TLS_README.gz in the postfix-doc package for # information on enabling SSL in the smtp client. myhostname = FQDN alias_maps = hash:/etc/aliasesalias_database = hash:/etc/aliases myorigin = /etc/mailname #myorigin = $mydomain mydestination = FQDN, localhost.FQDN, , localhost relayhost = $mydomain mynetworks = 127.0.0.0/8 [::ffff:127.0.0.0]/104 [::1]/128 mailbox_size_limit = 0 recipient_delimiter = + inet_interfaces = loopback-only virtual_alias_maps = hash:/etc/postfix/virtual home_mailbox = mail/

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• Accidentally dd'ed an image to wrong drive / overwrote partition table + NTFS partition start

  - by Kento Locatelli

  I screwed up and set the wrong output for dd when trying to copy a freenas iso, overwriting the wrong external hard drive. Ironically, I was trying to setup a freenas server for data backup... External drive is only used for data storage, system is entirely intact Drive had a single NTFS partition filing the entire device (2TB WD elements) Drive originally had an MBR partition table. Drive now shows as having a GPT, presumably from the freenas image. Drive was mounted at the time, with maybe a couple kB of data written/read after running dd Drive is just a few months old and healthy (regular SMART / fs checks) I have not reboot the OS (crunchbang) /proc/partition still holds the correct information (and has been stored) Have dd's output (records in / out / bytes) testdrive did not find any partitions on quick or deep search running photorec to recover the more important data (a couple recent plaintext files that hadn't been backed up yet). Vast majority of disk content ( 80%) is unnecessary media files. My current plan is to let photorec do it's thing, then recreate the mbr with gparted and use cfdisk to create another NTFS partition using the sector information from /sys/block/.../. Is that a good course of action (that is, a chance of success)? Or anything else I should try first? Possibly relevant information: dd if=FreeNAS-8.0.4-RELEASE-p3-x86.iso of=/dev/sdc: 194568+0 records in 194568+0 records out 99618816 bytes (100 MB) copied grep . /sys/block/sdc/sdc*/{start,size}: /sys/block/sdc/sdc1/start:2048 /sys/block/sdc/sdc1/size:3907022848 cat /proc/partitions: major minor #blocks name ** Snipped ** 8 32 1953512448 sdc 8 33 1953511424 sdc1 current fdisk -l output: WARNING: GPT (GUID Partition Table) detected on '/dev/sdc'! The util fdisk doesn't support GPT. Use GNU Parted. Disk /dev/sdc: 2000.4 GB, 2000396746752 bytes 255 heads, 63 sectors/track, 243201 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x00000000 Disk /dev/sdc doesn't contain a valid partition table

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