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  • problem with hierarchical clustering in Python

    - by user248237
    I am doing a hierarchical clustering a 2 dimensional matrix by correlation distance metric (i.e. 1 - Pearson correlation). My code is the following (the data is in a variable called "data"): from hcluster import * Y = pdist(data, 'correlation') cluster_type = 'average' Z = linkage(Y, cluster_type) dendrogram(Z) The error I get is: ValueError: Linkage 'Z' contains negative distances. What causes this error? The matrix "data" that I use is simply: [[ 156.651968 2345.168618] [ 158.089968 2032.840106] [ 207.996413 2786.779081] [ 151.885804 2286.70533 ] [ 154.33665 1967.74431 ] [ 150.060182 1931.991169] [ 133.800787 1978.539644] [ 112.743217 1478.903191] [ 125.388905 1422.3247 ]] I don't see how pdist could ever produce negative numbers when taking 1 - pearson correlation. Any ideas on this? thank you.

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  • CSRF protecting and cross site form access

    - by fl00r
    Hi. I aw working on cross site authentication (some domains have got common authentication). So I want to send authentication data (login, password) to main domain from others. How should I use protect_from_forgery and how can I check if data received from valid domain? What I am thinking now is to turn off protect_from_forgery for session controller and check domain name of received data. But maybe I can configure CSRF protection for not only one domain?

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  • Copying an sqlite database from file to :memory using C#

    - by davidb
    I have a small database with tables containing a small amount of data which I need to copy into memory. Currently I am using: insertcommand.CommandText = "SELECT sql FROM sqlite_master WHERE sql NOT NULL;"; To pull all the table schema from the file database, however I'm not really sure how to proceed with creating these tables in the new memory database, and copying all the relevant data across. In short, how do I copy an SQLite database from file to memory using C# and System.Data.SQLite?

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  • Pass Linq Expression to a function

    - by Kushan Hasithe Fernando
    I want to pass a property list of a class to a function. with in the function based on property list I'm going to generate a query. As exactly same functionality in Linq Select method. Here I'm gonna implement this for Ingress Database. As an example, in front end I wanna run a select as this, My Entity Class is like this public class Customer { [System.Data.Linq.Mapping.ColumnAttribute(Name="Id",IsPrimaryKey=true)] public string Id { get; set; } [System.Data.Linq.Mapping.ColumnAttribute(Name = "Name")] public string Name { get; set; } [System.Data.Linq.Mapping.ColumnAttribute(Name = "Address")] public string Address { get; set; } [System.Data.Linq.Mapping.ColumnAttribute(Name = "Email")] public string Email { get; set; } [System.Data.Linq.Mapping.ColumnAttribute(Name = "Mobile")] public string Mobile { get; set; } } I wanna call a Select function like this, var result = dataAccessService.Select<Customer>(C=>C.Name,C.Address); then,using result I can get the Name and Address properties' values. I think my Select function should looks like this, ( *I think this should done using Linq Expression. But im not sure what are the input parameter and return type. * ) Class DataAccessService { // I'm not sure about this return type and input types, generic types. public TResult Select<TSource,TResult>(Expression<Func<TSource,TResult>> selector) { // Here using the property list, // I can get the ColumnAttribute name value and I can generate a select query. } } This is a attempt to create a functionality like in Linq. But im not an expert in Linq Expressions. There is a project call DbLinq from MIT, but its a big project and still i couldn't grab anything helpful from that. Can someone please help me to start this, or can someone link me some useful resources to read about this.

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  • Paging Results - Drupal Module

    - by Krishma
    Hi I have custom drupal module. I receive result from a webservice that I need to page. Here is what I am doing $result = webservice_call_results(); $attributes = array( 'border' = 1, 'cellspacing' = 0, 'cellpadding' = 5, 'width' = 600, ); $rows = array(); foreach ($result-headers-RPMHeader as $data) { $rows[] = array( l(t($data-reg_no), round($data-total_payment,2), $data-prepared_by ); } $headers = array(t(' Reg Number'), t('Total Payment'),t('Prepared By')); $output =theme('table',$headers,$rows,$attributes); $output .= theme('pager', 1); // Not Working -- Paging $form['manufacturer_search']['table'] = array( '#type' = 'markup', '#value' = $output); The paging is not working. Any Idea why, please help

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  • SQL Server Merge statement issue

    - by George2
    Hello everyone, I am learning and using SQL Server 2008 new Merge statement, merge statement will compare/operate source table and destination table row by row ("operate" I mean operations performed for when matched or not-matched conditions). My question is whether the whole merge process will be one transaction or each row comparison/operation will be one transaction? Appreciate if any document to prove it. thanks in advance, George

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  • stored values within a custom function

    - by romunov
    My program takes a data.frame and crunches the numbers. At one point, values from j-th column are multiplied by a predefined values that depends on the column name (species name, actually - it's en ecological index). So far, I've been providing these values via a second data.frame by matching column names. What would be an efficient way of integrating fixed variable values within a function? I would like my program to be as portable as possible, without the need for a second data.frame file.

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  • sql CE 3.5 pros and cons

    - by Buzz
    Hi, Currently we are using xml files as local data store for our disconnected application, there is proposal to move to SQL CE database. Can some one with experience of SQL CE provide some pros and cons of using sql compact, for example data type support etc. As Central DB server we are using SQL Server2005. One of the requirement is to merge local store with central DB, and we don't want any data loss. Thanks

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  • Warning: cast increases required alignment

    - by dash-tom-bang
    I'm recently working on this platform for which a legacy codebase issues a large number of "cast increases required alignment to N" warnings, where N is the size of the target of the cast. struct Message { int32_t id; int32_t type; int8_t data[16]; }; int32_t GetMessageInt(const Message& m) { return *reinterpret_cast<int32_t*>(&data[0]); } Hopefully it's obvious that a "real" implementation would be a bit more complex, but the basic point is that I've got data coming from somewhere, I know that it's aligned (because I need the id and type to be aligned), and yet I get the message that the cast is increasing the alignment, in the example case, to 4. Now I know that I can suppress the warning with an argument to the compiler, and I know that I can cast the bit inside the parentheses to void* first, but I don't really want to go through every bit of code that needs this sort of manipulation (there's a lot because we load a lot of data off of disk, and that data comes in as char buffers so that we can easily pointer-advance), but can anyone give me any other thoughts on this problem? I mean, to me it seems like such an important and common option that you wouldn't want to warn, and if there is actually the possibility of doing it wrong then suppressing the warning isn't going to help. Finally, can't the compiler know as I do how the object in question is actually aligned in the structure, so it should be able to not worry about the alignment on that particular object unless it got bumped a byte or two?

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  • DataGrid In Java Struts Web Application

    - by Anand
    Hi After scouring the web I have edited my question from the one below to what it is now. Ok I seem to understand that I don't need all the capabilities of excel right now. I think i am satisfied having a data grid to display data. Basically i am working on Struts 2 and I wat my jsp page to have an excel like feel and hence looks like even a datagrid is sufficient. I came across This Technology I am not sure whether I must go ahead and use it. Any other suggestions, alternatives are welcome The older version of the question "I have a java web application running on windows currently. I may host it in future in a Linux Server. My application allows people to upload data. I want to display the data they have uploaded in an excel file and render it in a portion of my webpage. How do I go about this ?"

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  • Instantiate dynamic array Magento

    - by Tegan Snyder
    Kick me if I'm being silly but some some reason I'm having a heck of time building a dynamic array in magento. Example: $data = array(); $data[0] = 'test'; $data[1] = 'what'; I keep getting an ERROR: Notice: Undefined offset: 0 Any ideas? Do I need to handle these arrays differently since they are in a class?

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  • Which network protocol to use for lightweight notification of remote apps?

    - by Chris Thornton
    I have this situation.... Client-initiated SOAP 1.1 communication between one server and let's say, tens of thousands of clients. Clients are external, coming in through our firewall, authenticated by certificate, https, etc.. They can be anywhere, and usually have their own firewalls, NAT routers, etc... They're truely external, not just remote corporate offices. They could be in a corporate/campus network, DSL/Cable, even Dialup. Client uses Delphi (2005 + SOAP fixes from 2007), and the server is C#, but from an architecture/design standpoint, that shouldn't matter. Currently, clients push new data to the server and pull new data from the server on 15-minute polling loop. The server currently does not push data - the client hits the "messagecount" method, to see if there is new data to pull. If 0, it sleeps for another 15 min and checks again. We're trying to get that down to 7 seconds. If this were an internal app, with one or just a few dozen clients, we'd write a cilent "listener" soap service, and would push data to it. But since they're external, sit behind their own firewalls, and sometimes private networks behind NAT routers, this is not practical. So we're left with polling on a much quicker loop. 10K clients, each checking their messagecount every 10 seconds, is going to be 1000/sec messages that will mostly just waste bandwidth, server, firewall, and authenticator resources. So I'm trying to design something better than what would amount to a self-inflicted DoS attack. I don't think it's practical to have the server send soap messages to the client (push) as this would require too much configuration at the client end. But I think there are alternatives that I don't know about. Such as: 1) Is there a way for the client to make a request for GetMessageCount() via Soap 1.1, and get the response, and then perhaps, "stay on the line" for perhaps 5-10 minutes to get additional responses in case new data arrives? i.e the server says "0", then a minute later in response to some SQL trigger (the server is C# on Sql Server, btw), knows that this client is still "on the line" and sends the updated message count of "5"? 2) Is there some other protocol that we could use to "ping" the client, using information gathered from their last GetMessageCount() request? 3) I don't even know. I guess I'm looking for some magic protocol where the client can send a GetMessageCount() request, which would include info for "oh by the way, in case the answer changes in the next hour, ping me at this address...". Also, I'm assuming that any of these "keep the line open" schemes would seriously impact the server sizing, as it would need to keep many thousands of connections open, simultaneously. That would likely impact the firewalls too, I think. Is there anything out there like that? Or am I pretty much stuck with polling? TIA, Chris

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  • Django install on a shared host, .htaccess help

    - by redconservatory
    I am trying to install Django on a shared host using the following instructions: docs.google.com/View?docid=dhhpr5xs_463522g My problem is with the following line on my root .htaccess: RewriteRule ^(.*)$ /cgi-bin/wcgi.py/$1 [QSA,L] When I include this line I get a 500 error with almost all of my domains on this account. My cgi-bin directory is home/my-username/public_html/cgi-bin/ The wcgi.py file contains: #!/usr/local/bin/python import os, sys sys.path.insert(0, "/home/username/django/") sys.path.insert(0, "/home/username/django/projects") sys.path.insert(0, "/home/username/django/projects/newprojects") import django.core.handlers.wsgi os.chdir("/home/username/django/projects/newproject") # optional os.environ['DJANGO_SETTINGS_MODULE'] = "newproject.settings" def runcgi(): environ = dict(os.environ.items()) environ['wsgi.input'] = sys.stdin environ['wsgi.errors'] = sys.stderr environ['wsgi.version'] = (1,0) environ['wsgi.multithread'] = False environ['wsgi.multiprocess'] = True environ['wsgi.run_once'] = True application = django.core.handlers.wsgi.WSGIHandler() if environ.get('HTTPS','off') in ('on','1'): environ['wsgi.url_scheme'] = 'https' else: environ['wsgi.url_scheme'] = 'http' headers_set = [] headers_sent = [] def write(data): if not headers_set: raise AssertionError("write() before start_response()") elif not headers_sent: # Before the first output, send the stored headers status, response_headers = headers_sent[:] = headers_set sys.stdout.write('Status: %s\r\n' % status) for header in response_headers: sys.stdout.write('%s: %s\r\n' % header) sys.stdout.write('\r\n') sys.stdout.write(data) sys.stdout.flush() def start_response(status,response_headers,exc_info=None): if exc_info: try: if headers_sent: # Re-raise original exception if headers sent raise exc_info[0], exc_info[1], exc_info[2] finally: exc_info = None # avoid dangling circular ref elif headers_set: raise AssertionError("Headers already set!") headers_set[:] = [status,response_headers] return write result = application(environ, start_response) try: for data in result: if data: # don't send headers until body appears write(data) if not headers_sent: write('') # send headers now if body was empty finally: if hasattr(result,'close'): result.close() runcgi() Only I changed the "username" to my username...

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  • Drawbacks of Dynamic Query in Sqlserver 2005 ?

    - by KuldipMCA
    I have using the many dynamic Query in my database for the procedures because my filter is not fix so i have taken @filter as parameter and pass in the procedure. Declare @query as varchar(8000) Declare @Filter as varchar(1000) set @query = 'Select * from Person.Address where 1=1 and ' + @Filter exec(@query) Like that my filter contain any Field from the table for comparison. It will affect my performance or not ? is there any alternate way to achieve this type of things

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  • ASP.NET SqlDataSource update and create FK reference

    - by William
    The short version: I have a grid view bound to a data source which has a SelectCommand with a left join in it because the FK can be null. On Update I want to create a record in the FK table if the FK is null and then update the parent table with the new records ID. Is this possible to do with just SqlDataSources? The detailed version: I have two tables: Company and Address. The column Company.AddressId can be null. On my ascx page I am using a SqlDataSource to select a left join of company and address and a GridView to display the results. By having my UpdateCommand and DeleteCommand of the SqlDataSource execute two statements separated by a semi-colon I am able to use the GridView's Edit and Delete functionality to update both table simultaneously. The problem I have is when the Company.AddressId is null. What I need to have happen is have the data source create a record in the Address table and then update the Company table with the new Address.ID then proceed with the update as usual. I would like to do this with just data sources if possible for consistency/simplicity sake. Is it possible to have my data source do this, or perhaps add a second data source to the page to handle some of this? Once I have that working I can probably figure out how to make it work with the InsertCommand as well but if you are on a roll and have an answer for how to make that fly as well feel free to provide it. Thanks.

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  • problem with fifos linux

    - by nunos
    I am having problem debugging why n_bytes in read_from_fifo function in client.c doesn't correspond to the value written to the fifo. It should only write 25 bytes but it tries to read a lot more (1836020505 bytes (!) to be exact). Any idea why this is happening? server.c: #include <stdio.h> #include <stdlib.h> #include <string.h> #include <errno.h> #include <unistd.h> #include <fcntl.h> #include <sys/wait.h> #include <signal.h> #include <pthread.h> #include <sys/stat.h> typedef enum { false, true } bool; //first read the int with the number of bytes the data will have //then read that number of bytes bool read_from_fifo(int fd, char* var) { int n_bytes; if (read(fd, &n_bytes, sizeof(int))) { printf("going to read %d bytes\n", n_bytes); if (read(fd, var, n_bytes)) printf("read var\n"); else { printf("error in read var. errno: %d\n", errno); exit(-1); } } return true; } int main() { mkfifo("/tmp/foo", 0660); int fd = open("/tmp/foo", O_RDONLY); char var[100]; read_from_fifo(fd, var); printf("var: %s\n", var); return 0; } client.c: #include <stdio.h> #include <stdlib.h> #include <string.h> #include <errno.h> #include <unistd.h> #include <fcntl.h> typedef enum { false, true } bool; //first write to fd a int with the number of bytes that will be written afterwards bool write_to_fifo(int fd, char* data) { int n_bytes = (strlen(data)) * sizeof(char); printf("going to write %d bytes\n", n_bytes); if (write(fd, &n_bytes, sizeof(int) != -1)) if (write(fd, data, n_bytes) != -1) return true; return false; } int main() { int fd = open("/tmp/foo", O_WRONLY); char data[] = "some random string abcdef"; write_to_fifo(fd, data); return 0; } Help is greatly appreciated. Thanks in advance.

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  • How do I write a powershell script that gets the file with the most recent last write time from a fo

    - by Shoko
    The subject line says it all. I'd also like to do this using pipes. I figured that I could use Get-ChildItem, Measure-Object and Where-Object, but Measure-Object doesn't like dates. Should I have a script block which loops through each item returned from Get-ChildItem and does a comparison to see if it's the most recent? I thought that there should be a handy PS cmdlet for that.

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  • ResultSet and aggregation

    - by kachanov
    Ok, I admit my situation is special There is a data system that supports SQL-92 and JDBC interface However the SQL requets are pretty expensive, and in my application I need to retreive the same data multiple times and aggregate it ("group by") on different fields to show different dimensions of the same data. For example on one screen I have three tables that show the same set or records but aggregated by City (1st grid), by Population (2nd grid), by number of babies (3rd grid) This amounts to 3 SQL queries (which is very slow), UNLESS anyone of you can suggest any idea any library from apache commons or from google code, so that I can select all records into ResultSet and get 3 arrays of data group by different fields from this single ResultSet. Am I'm missing some obvious and unexpected solution to this problem?

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  • Bound a treeview control to user-defined complex type using EF 4

    - by GIbboK
    Hi, I use Asp.net, SQL 2008 and EF 4. I need display hierarchy data in a treeview control, Data is stored in a DB that use HierarchyId. Unfortunately, EF4 doesn't support HierarchyId. So in this case, I thought to have a stored procedure that deals with my hierarchy and return a result set back to EF that EF4 can turn into a collection of user-defined complex type that can then be bound directly to the treeview control. I imported a SPROC in EF 4 using Import Function and now I have a Complex DataType called: CategoryHierarchy_Result An image of my Model: Here some data from the Complex Type (in a GridView for example GridView1.DataSource = context.CategoryHierarchy(1);): My questions is: How to display my data from my Complex Type in a TreeView Control, showing a Tree structure that respect CategoryNodeString? I am a beginner an I never use TreeView before, any help or resource would be appreciated! Thanks!. Here some useful resource: http://www.robbagby.com/entity-framework/entity-framework-modeling-action-stored-procedures/

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  • How add loading image using jquery?

    - by user244394
    I'm working on a form, <form id="myform" class="form"> </form> that gets submitted to the server using jquery ajax. How can I refresh the form on success to show the updated form information and add a spinner until the form loads? here is my html and jquery snippet <div class="container"> <div class="page-header"> <div class="span2"> <!--Sidebar content--> <img src="img/emc_logo.png" title="EMC" > </div> <div class="span6"> <h2 class="form-wizard-heading">Configuration</h2> </div> </div> <form id="myform" class="form"> </form> </div> <!-- /container --> <!-- Modal --> <div id="myModal" class="modal hide fade" tabindex="-1" role="dialog" aria-labelledby="myModalLabel" aria-hidden="true"> <div class="modal-header"> <button type="button" class="close" data-dismiss="modal" aria-hidden="true">&times;</button> <h3 id="myModalLabel">Configuration Changes</h3> <p><span class="label label-important">Please review your changes before submitting. Submitting the changes will result in rebooting the cluster</span></p> </div> <div class="modal-body"> <table class="table table-condensed table-striped" id="display"></table> </div> <div class="modal-footer"> <button id="cancel" class="btn" data-dismiss="modal" aria-hidden="true">Close</button> <button id="save" class="btn btn-primary">Save changes</button> </div> </div> //Jquery part $(document).ready(function () { $('input').hover(function () { $(this).popover('show') }); // On mouseout destroy popout $('input').mouseout(function () { $(this).popover('destroy') }); $('#myform').on('submit', function (ev) { ev.preventDefault(); var data = $(this).serializeObject(); json_data = JSON.stringify(data); $('#myModal').modal('show'); $.each(data, function (key, val) { var tablefeed = $('<tr><td>' + key + '</td><td id="' + key + '">' + val + '</td><tr>').appendTo('#display'); }); $(".modal-body").html(tablefeed); }); $("#cancel").click(function () { $("#display").empty(); }); $(function () { $("#save").click(function () { // validate and process form here alert("button submitted" + json_data); $.ajax({ type: "POST", url: "somefile.json.", data: json_data, contentType: 'application/json', success: function (data, textStatus, xhr) { console.log(arguments); console.log(xhr.status); alert("Your form has been submitted: " + textStatus + xhr.status); }, error: function (jqXHR, textStatus, errorThrown) { alert(jqXHR.responseText + " - " + errorThrown + " : " + jqXHR.status); } }); }); }); });

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  • IE7 not digesting JSON: "parse error"

    - by Kenny Leu
    While trying to GET a JSON, my callback function is NOT firing. $.ajax({ type:"GET", dataType:'json', url: myLocalURL, data: myData, success: function(returned_data){alert('success');} }); The strangest part of this is that my JSON(s) validates on JSONlint this ONLY fails on IE7...it works in Safari, Chrome, and all versions of Firefox. If I use 'error', then it reports "parseError"...even though it validates! Is there anything that I'm missing? Does IE7 not process certain characters, data structures (my data doesn't have anything non-alphanumeric, but it DOES have nested JSONs)? I have used tons of other AJAX calls that all work (even in IE7), but with the exception of THIS call. An example data return here is: {"question":{ "question_id":"19", "question_text":"testing", "other_crap":"none" }, "timestamp":{ "response":"answer", "response_text":"the text here" } } I am completely at a loss. Hopefully someone has some insight into what's going on...thank you!

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  • How to maintain a persistant network-connection between two applications over a network?

    - by John
    I was recently approached by my management with an interesting problem - where I am pretty sure I am telling my bosses the correct information but I really want to make sure I am telling them the correct stuff. I am being asked to develop some software that has this function: An application at one location is constantly processing real-time data every second and only generates data if the underlying data has changed in any way. On the event that the data has changed send the results to another box over a network Maintains a persistent connection between the both machines, altering the remote box if for some reason the network connection went down From what I understand, I imagine that I need to do some reading on doing some sort of TCP/IP socket-level stuff. That way if the connection is dropped the remote location will be aware that the data it has received may be stale. However management seems to be very convinced that this can be accomplished using SOAP. I was under the impression that SOAP is more or less a way for a client to initiate a procedure from a server and get some results via the HTTP protocol. Am I wrong in assuming this? I haven't been able to find much information on how SOAP might be able to solve a problem like this. I feel like a lot of people around my office are using SOAP as a buzzword and that has generated a bit of confusion over what SOAP actually is - and is capable of. Any thoughts on how to accomplish this task would be appreciated!

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