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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • MULE lifecycle - how to hook into startup process

    - by prule
    I would like to be able to create some directories after Mule has started, but before it starts any other services. I started looking into notifications but I'm not sure if that is the right place to do it. I will need access to the spring beans so it would have to be after spring init, but before any of the connectors and other processes kick off. http://www.mulesource.org/display/MULE2USER/Mule+Server+Notifications Thanks.

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  • How to solve following issues?

    - by lakshmi
    hi im using postgresql database, I want to insert my datas into database,but whenever i run the server,it was display the following Error. Error:org.postgresql.util.PSQLException: FATAL: sorry, too many clients already How to solve this problem.My server.properties file is following. Sever.properties File: serverPortData=9042 serverPortCommand=9078 simocoConnectionURL=jdbc:postgresql://127.0.0.1:5432/vTrack?user=postgres&password=postgres dst=1 DatabaseName=vTrack ServerName=127.0.0.1 User=postgres Password=admin MaxConnections=90 InitialConnections=80 PoolSize=100 MaxPoolSize=100 KeepAliveTime=100 SimocoPoolSize=120 SimocoMaxPoolSize=120 SimocoKeepAliveTime=100 PortNumber=5432 Logging=1 Thanks.

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  • CSS Positioning

    - by Davey
    Trying to mess with this wordpress theme and can't figure out why the sidebar is stacking underneath the content block. Any help would be very appreciated. http://www.buffalostreetbooks.com/events CSS: body { font-family: Arial, Helvetica, Verdana, Sans-serif; font-size: 10pt; background-color: #692022; background-image:url("http://www.buffalostreetbooks.com/wp-content/themes/autumn-leaves/images/repeatflower.png"); } body,h1#blog-title { margin: 0; padding: 0; } a { color: blue; } a:hover { color: #FF8C00; } a img { border: 0 none; } #wrapper { width: 960px; margin: 0 auto; background-color: #F4FBF4; border-left: 1px solid #ccc; border-right: 1px solid #ccc; } #header { background-image:url("http://www.buffalostreetbooks.com/wp-content/themes/autumn-leaves/images/headertime.png"); width:768px; height: 200px; } #inner-header { padding: 125px 1em 0; } h1#blog-title { font-size: 2em; } h1#blog-title a { color: #800000; } .entry-title a { color: #CD853F; } h1#blog-title a, .entry-title a, #footer a { text-decoration: none; } h1#blog-title a:hover, .entry-title a:hover, #footer a:hover { text-decoration: underline; } div.skip-link { display: none; } #menu { border-bottom: 1px solid #ccc; } #menu a { color: #000; } #menu a:hover { text-decoration: underline; } #menu li.current_page_item a, #menu li.current_page_item a:hover { background-color: #DFC28B; text-decoration: none; } #content { padding: 1em; width:600px; } .entry-title { font-size: 1.5em; margin: 1em 0 0 0; } abbr.published { color: #666; border: 0 none; } .entry-meta, .entry-date { color: #666; } #comments-list .avatar { float: left; margin-right: 1em; } #comments-list .n { font-weight: bold; } .entry-meta, .comment-meta { font-style: italic; } #comments-list p { clear: left; } #primary { padding-left: 1em; font-size: 0.9em; border-left: 1px solid #ccc; border-bottom: 1px solid #ccc; background-color: #FFFACD; } #footer { text-align: center; font-size: 0.8em; border-top: 1px solid #ccc; border-bottom: 1px solid #ccc; margin-bottom: 1em; } #inner-footer { padding: 1em 0; } .entry-meta, .entry-meta a, .comment-meta, .comment-meta a, .sidebar, .sidebar a, #footer, #footer a { color: #666; } /* LAYOUT: Two-Column (Right) DESCRIPTION: Two-column fluid layout with one sidebars right of content */ div#container { margin:0 0 0 0; width:960px; height:100%; } div#content { margin:0 0 0 0; } div.sidebar { overflow:hidden; width:280px; min-height:500px; clear:both; } div#secondary { clear:right; } div#footer { clear:both; width:100%; } /* Just some example content */ div#menu { height:2em; width:100%; } div#menu ul,div#menu ul ul { line-height:2em; list-style:none; margin:0; padding:0; } div#menu ul a { display:block; margin-right:1em; padding:0 0.5em; text-decoration:none; } div#menu ul ul ul a { font-style:italic; } div#menu ul li ul { left:-999em; position:absolute; } div#menu ul li:hover ul { left:auto; } .entry-title,.entry-meta { clear:both; } div#primary { } form#commentform .form-label { margin:1em 0 0; } form#commentform span.required { background:#fff; color:#c30; } form#commentform,form#commentform p { padding:0; } input#author,input#email,input#url,textarea#comme nt { padding:0.2em; } div.comments ol li { margin:0 0 3.5em; } textarea#comment { height:13em; margin:0 0 0.5em; overflow:auto; width:66%; } .alignright,img.alignright{ float:right; margin:1em 0 0 1em; } .alignleft,img.alignleft{ float:left; margin:1em 1em 0 0; } .aligncenter,img.aligncenter{ display:block; margin:1em auto; text-align:center; } div.gallery { clear:both; height:180px; margin:1em 0; width:100%; } p.wp-caption-text{ font-style:italic; } div.gallery dl{ margin:1em auto; overflow:hidden; text-align:center; } div.gallery dl.gallery-columns-1 { width:100%; } div.gallery dl.gallery-columns-2 { width:49%; } div.gallery dl.gallery-columns-3 { width:33%; } div.gallery dl.gallery-columns-4 { width:24%; } div.gallery dl.gallery-columns-5 { width:19%; } div#nav-above { margin-bottom:1em; } div#nav-below { margin-top:1em; } div#nav-images { height:150px; margin:1em 0; } div.navigation { height:1.25em; } div.navigation div.nav-next { float:right; text-align:right; } div.sidebar h3 { font-size:1.2em; } div.sidebar input#s { width:7em; } div.sidebar li { list-style:none; margin:0 0 2em; } div.sidebar li form { margin:0.2em 0 0; padding:0; } div.sidebar ul ul { margin:0 0 0 2em; } div.sidebar ul ul li { list-style:disc; margin:0; } div.sidebar ul ul ul { margin:0 0 0 0.5em; } div.sidebar ul ul ul li { list-style:circle; } div#menu ul li,div.gallery dl,div.navigation div.nav-previous { float:left; } input#author,input#email,input#url,div.navigation div { width:50%; } div.gallery *,div.sidebar div,div.sidebar h3,div.sidebar ul { margin:0; padding:0; }

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  • The difference between triangulation and mesh

    - by xiao
    I have done some computer graphical programming recently, and I have no experience before. I used the library call CGAL(computer geometry algorithm library). Also, I noticed that there is class for triangulation and also class for mesh. Is mesh just a kind of triangle net? Do they have any differences? Thanks!

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  • How can I dynamically resize the jQuery Colorbox plugin?

    - by James Skidmore
    The AJAX content loaded in a Colorbox has some JavaScript included that resizes things within the content. Colorbox determines its sizing based on the sizes before all of the AJAX happens. How can I make the Colorbox resize after the content has been loaded? Here is a link where someone said that you can call colorbox() again after it's been loaded, but I can't figure out how to do that: http://groups.google.com/group/colorbox/browse_thread/thread/535d21c69e9006b0

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  • I'm trying to ressurrect UnderC C/C++ interpreter [closed]

    - by Domingo
    Hello ! I'm trying to ressurrect UnderC C/C++ interpreter https://code.google.com/p/underc-fltk/ and I got it to compile with modern mingw compilers 3.4.5 and up, I need some experts advice on some topics: -Yacc/Bison grammar (example some problems with recognizing "unsigned" alone and "friend class") -ARM assembler only one function to call native os functions (X86 already there for windows and linux) -General improvements I expect it to work on WINCE, IPHONE, SYMBIAN in the near future. Thanks in advance for your expertize, time and attention !

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  • Double postback problem

    - by Juan Manuel Formoso
    Hi, I have a ASP.NET 1.1 application, and I'm trying to find out why when I change a ComboBox which value is used to fill another one (parent-child relation), two postbacks are produced. I have checked and checked the code, and I can't find the cause. Here are both call stacks which end in a page_load First postback (generated by teh ComboBox's autopostback) Second postback (this is what I want to find why it's happening) Any suggestion? What can I check?

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  • What is a lightweight cross platform WAV playing library?

    - by Lokkju
    I'm looking for a lightweight way to make my program (written in C) be able to play audio files on either windows or linux. I am currently using windows native calls, which is essentially just a single call that is passed a filename. I would like something similar that works on linux. The audio files are Microsoft PCM, Single channel, 22Khz Any Suggestions?

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  • GORM "getNextException" equivalent

    - by Josh K
    GORM sits on top of [Hibernate](http://en.wikipedia.org/wiki/Hibernate_(Java). The issue is that sometimes Hibernate will throw exceptions from the JDBC driver that I can't figure out how to investigate. Specifically: Could not execute JDBC batch update; /* snip */ Caused by: java.sql.BatchUpdateException: /* snip */ [insert] was aborted. Call getNextException to see the cause. If it makes any difference I'm using PostgreSQL.

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  • Filtering records in controller

    - by Elliot
    So in my model, there is a field user_id - which holds the ID of the user who created the record. To display the ID of the current user, I have @current_user.id My question is this, in the controller I want @posts to only have records created by @current_user.id how can I do this?

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  • jQuery UI: Dialog button styling

    - by Peter Bridger
    Is there an easy way to apply CSS/icons to the modal buttons on a jQuery UI modal dialog box? If I include the HTML to display an icon with the button text, it shows the HTML as text rather than rendering the code. I'm guessing I could write some jQuery to find the button and overwrite the HTML with what I want, but I'm hoping there's an easier more direct way.

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  • resources at class library project

    - by Night Walker
    Hello I want to add some xml file as resource to my class library project . Any idea how to do so , and call it later? In windows application i would do it like ClassLibrary1.Properties.Resources.file.xml But here it didn't worked any idea how i do it here ?

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  • What is SIP trunking?

    - by hypnocode
    Can someone explain to me in plain English what SIP trunking is, please? I've read about it on Google, but I don't really grasp it yet. Does it allow a VoIP call to be placed outside of the LAN? So if you had Asterisk setup as the PBX, then IP calls could be made outside of the network? Am I close or am I just saying stupid words?

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  • Loading Ajax within a Google Maps InfoWindow

    - by McCrum
    I have put together a 5 star rating system using PHP and Ajax which will write the rating into a database. (See link below) http://andrewmccrum.com/maps/rate/5star.php I want this rating system to work within a Google Maps InfoWindow but at the minute I can only get the InfoWindow to read and display the rating. It will not let the user vote like the top link. And I have no idea why www.andrewmccrum.com/maps/database/index.php

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  • How to fix this python program?

    - by Phenom
    import math def p(n): return 393000*((288200/393000)^n * math.exp(-(288200/393000)))/math.factorial(n) print p(3) When I run it, I get the following error message: Traceback (most recent call last): File "poisson.py", line 6, in <module> print p(3) File "poisson.py", line 4, in p return 393000*((288200/393000)^n * math.exp(-(288200/393000)))/math.factoria l(n) TypeError: unsupported operand type(s) for ^: 'int' and 'float'

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  • jQuery fadeIn is not working in Internet Explorer

    - by Nazaf
    I have the following HTML DIV which does not work using FadeIn in IE: $(".tip").fadeIn("slow"); /* Is not working in IE. */ $(".tip").show(); /* Works well in IE, that's weird. */ <div class="tip" style="width: 220px; display: none;"> <div class="tip-header"> <span><b>Title</b></span> <div class="right close"><a href="javascript:void(0);">close</a> <img alt="" src="/Images/close-normal.png"/></div> </div> <div class="tip-content">EBody comes here.</div> </div> .tip { display: block; z-index: 99999; position: fixed; background-color: #ffffff; -moz-box-shadow: 2px 2px 10px 2px rgba(0, 0, 0, 0.6); -webkit-box-shadow: 2px 2px 10px 2px rgba(0, 0, 0, 0.6); border:solid 1px #82C2FA; -moz-border-radius: 8px; -webkit-border-radius: 8px; } .tip-header { padding: 8px; min-height: 10px; -moz-border-radius-topleft: 8px; -moz-border-radius-topright: 8px; -webkit-border-radius-topright: 8px; -webkit-border-radius-topleft: 8px; background-color: #CFE6FD; border-bottom: 1px solid #82C2FA; } .tip-header span { font-size: 14px; color: #666666; } .tip-content { padding: 8px; text-align: left; font-size: 12px; } .close, .whats-this { cursor: pointer; } .close a { color: #085FBC; text-decoration: none; } .close img { vertical-align: bottom; }

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  • JNI on Android, how to pass int from c to java

    - by Joaquin
    I have a C function, I simply returns an integer, as follows: JNIEXPORT jint JNICALL Java_org_project_ScreenPosition(JNIEnv* env, jobject thiz){ int i=1; return i; } I call this function in the way of an Activity onCreateContextMenu Android, as follows: public void onCreateContextMenu(ContextMenu menu, View v, ContextMenuInfo menuInfo){ menu.setHeaderTitle("TryMenu"); int a=ScreenPosition(); return; } But all crash

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  • Invoking web service methods from code-behind

    - by Peter Wone
    The application on which I am working has a web service exposing various methods. Most of these methods use WebOperationContext.Current to set headers up to prevent cacheing. This works fine when the service methods are consumed in AJAX via the generated proxy, but when I attempt to do the same thing from code-behind, WebOperationContext.Current is null. Can anyone tell me how to confer appropriate call context on the method invocation?

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  • Round bottom corners on Android Bitmap?

    - by alex
    Hey all, what would be best practice for clipping the bottom borders of a Bitmap? Just manipulate the Bitmap itself or overlay an alpha mask drawable or ...? The whole story: I've a Listview which looks like the iPhone's grouped UITableView style. I would like to display a Bitmap in the last row, but for now the Bitmap overlaps my custom background drawable of the Listview cell. Thx in advance!

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  • How can I debug expect_before behaviour

    - by itj
    I am relatively new to TCL / expect and mostly modifying existing code. expect_before doesn't seem to do what I expect (which is fine) but I can't work out how to debug it. I have used -d option and am now using exp_internal -f "argh.log" 1 to create a log file, but it isn't helping me. expect_before -info seems useful, but I am not able to grab / display the output (I did say I was new to TCL)

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