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• On counting pairs of words that differ by one letter

  - by Quintofron

  Let us consider n words, each of length k. Those words consist of letters over an alphabet (whose cardinality is n) with defined order. The task is to derive an O(nk) algorithm to count the number of pairs of words that differ by one position (no matter which one exactly, as long as it's only a single position). For instance, in the following set of words (n = 5, k = 4): abcd, abdd, adcb, adcd, aecd there are 5 such pairs: (abcd, abdd), (abcd, adcd), (abcd, aecd), (adcb, adcd), (adcd, aecd). So far I've managed to find an algorithm that solves a slightly easier problem: counting the number of pairs of words that differ by one GIVEN position (i-th). In order to do this I swap the letter at the ith position with the last letter within each word, perform a Radix sort (ignoring the last position in each word - formerly the ith position), linearly detect words whose letters at the first 1 to k-1 positions are the same, eventually count the number of occurrences of each letter at the last (originally ith) position within each set of duplicates and calculate the desired pairs (the last part is simple). However, the algorithm above doesn't seem to be applicable to the main problem (under the O(nk) constraint) - at least not without some modifications. Any idea how to solve this?

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• How to create a String Array and link it to a Grade array

  - by user1861544

  I have a project that I need to create 2 Arrays, one to hold Student Names and one to hold Student Scores. The user inputs the size of the array, and the array needs to be sorted using BubbleSort (putting the high scores at the top). I have started the project, created the first array for scores, I have successfully done bubble sort and sorted the grades. Now I can't figure out how to make an array for Names, and once I do how do I make the names array correspond to the Grades array BubbleSort? Here is the code I have so far. import java.util.Scanner; public class Grades { public static void main(String[]args){ { Scanner UserIn = new Scanner(System.in); System.out.print( "How many students are there? " ); int[]GradeArray = new int[UserIn.nextInt()]; for( int i=0 ; i<GradeArray.length ; i++ ) { System.out.print( "Enter Grade for Student " + (i+1) + ": " ); GradeArray[i] = UserIn.nextInt(); } bubbleSort(GradeArray); for( int i : GradeArray ) System.out.println( i ); System.out.println(); } } private static void bubbleSort(int[]GradeArray){ int n = GradeArray.length; int temp = 0; String temp2; for(int i=0; i<n; i++){ for(int j=1; j<(n-i);j++){ if(GradeArray[j-1]<GradeArray[j]){ //swap temp=GradeArray[j-1]; GradeArray[j-1]=GradeArray[j]; GradeArray[j]=temp; } } } } } Also how do I change the grades to Double? I started with Int and when I try to change everything to double I get an error saying "Found Double, expected Int".

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• Encode_JSON Errors in Lasso 8.6.2 After Period of Time

  - by ATP_JD

  We are in the process of converting apps from Lasso 8 to Lasso 9, and as an intermediate step, have upgraded from 8.5.5 to 8.6.2 (which runs alongside 9 on our new box, in different virtual hosts). I am finding that with 8.6.2 we are getting a slew of errors on pages that call encode_json. The weird thing with these errors is that they don't start happening until some period of time after the site starts. Then, some hours later, all encode_json calls begin to fail with error messages like this: An error occurred while processing your request. Error Information Error Message: No tag, type or constant was defined under the name "?????????????????" with arguments: array: (pair: (-find)=([\x{0020}-\x{21}\x{23}-\x{5b}\x{5d}-\x{10fff}])), (r) at: onCompare with params: 'r' at: JSON with params: 'reload', -Options=array: (-Internal) at: JSON with params: @map: (reload)=(false), (tcstring)=(LZU), (timestring)=(10:42 AM&nbsp;&nbsp;&nbsp;1442Z) at: [...].lasso with params: 'pageloadtime'='1383038310' on line: 31 at position: 1 Error Code: -9948 (Yes, those Chinese(?) characters are in the error message.) I have removed the 8.5.5 encode_json tag from LassoStartup, so we are using the correct built-in method. The encode_json method fails for any and all parameters I throw at it from simple strings to arrays of maps. Upon restarting the site, encode_json resumes working for an hour or two, seemingly depending on load. On 8.5.5, we don't have this problem. Does anyone have experience with this issue? Any advice regarding trying the 8.5.5 tag swap encode_json to see if I can override the built-in method? Maybe it will work better? Thanks in advance for your time and assistance. -Justin

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• Data Structure / Hash Function to link Sets of Ints to Value

  - by Gaminic

  Given n integer id's, I wish to link all possible sets of up to k id's to a constant value. What I'm looking for is a way to translate sets (e.g. {1, 5}, {1, 3, 5} and {1, 2, 3, 4, 5, 6, 7}) to unique values. Guarantees: n < 100 and k < 10 (again: set sizes will range in [1, k]). The order of id's doesn't matter: {1, 5} == {5, 1}. All combinations are possible, but some may be excluded. All sets and values are constant and made only once. No deletes or inserts, no value updates. Once generated, the only operations taking place will be look-ups. Look-ups will be frequent and one-directional (given set, look up value). There is no need to sort (or otherwise organize) the values. Additionally, it would be nice (but not obligatory) if "neighboring" sets (drop one id, add one id, swap one id, etc) are easy to reach, as well as "all sets that include at least this set". Any ideas?

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• Tools for Automated Source Code Editing

  - by Steve

  I'm working on a research project to automatically modify code to include advanced mathematical concepts (like adding random effects into a loop or encapsulating an existing function with a new function that adds in a more advanced physical model). My question to the community is: are there are any good tools for manipulating source code directly? I want to do things like Swap out functions Add variable declarations wherever they are required Determine if a function is multiplied by anything Determine what functions are called on a line of code See what parameters are passed to a function and replace them with alternatives Introduce new function calls on certain lines of code Wherever possible just leaving the rest of the code untouched and write out the results I never want to actually compile the code I only want to understand what symbols are used, replace and add in a syntactically correct way, and be able to declare variables at the right position. I've been using a minimal flex/bison approach with some success but I do not feel the it is robust. I hate to take on writing a full language parser just to add some new info to the end of a line or the top of a function. It seems like this is almost what is going to be required but it also seems like there should be some tools out there to do these types of manipulations already. The code to be changed is in a variety of languages, but I'm particularly interested in FORTRAN. Any thoughts?

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• Python: Parsing a colon delimited file with various counts of fields

  - by Mark

  I'm trying to parse a a few files with the following format in 'clientname'.txt hostname:comp1 time: Fri Jan 28 20:00:02 GMT 2011 ip:xxx.xxx.xx.xx fs:good:45 memory:bad:78 swap:good:34 Mail:good Each section is delimited by a : but where lines 0,2,6 have 2 fields... lines 1,3-5 have 3 or more fields. (A big issue I've had trouble with is the time: line, since 20:00:02 is really a time and not 3 separate fields. I have several files like this that I need to parse. There are many more lines in some of these files with multiple fields. ... for i in clients: if os.path.isfile(rpt_path + i + rpt_ext): # if the rpt exists then do this rpt = rpt_path + i + rpt_ext l_count = 0 for line in open(rpt, "r"): s_line = line.rstrip() part = s_line.split(':') print part l_count = l_count + 1 else: # else break break First I'm checking if the file exists first, if it does then open the file and parse it (eventually) As of now I'm just printing the output (print part) to make sure it's parsing right. Honestly, the only trouble I'm having at this point is the time: field. How can I treat that line specifically different than all the others? The time field is ALWAYS the 2nd line in all of my report files.

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• trying to switch beginning of an array with another

  - by user1874574

  I have a problem where i am trying to swap two arrays so that they switch beginnings. example: array 1 = (1,2,3,4,5,6,7,8) and array 2 = (11,12,13,14,15,16,17,18) i want to end up with the first array being (11,12,13,14,5,6,7,8) and i want the second array to be (1,2,3,4,15,16,17,18) but for some reason i end up with 1=(11,12,13,14,5,6,7,8) and 2=(11,12,13,14,15,16,17,18) my code is provided below, what am i doing wrong? public static void Mutate(Genetic lowest, Genetic secondLowest) { int halfway = (lowest.getPopulation().length)/2; int[] one = lowest.getPopulation(); int[] two = secondLowest.getPopulation(); int[] temp = secondLowest.getPopulation(); int[] temp2 = lowest.getPopulation(); for(int i = 0; i < halfway; i++){ temp[i] = one[i]; } lowest.setPopulation(temp); for(int i = 0; i < lowest.getPopulation().length; i++){ System.out.print(temp[i]); } System.out.println(); for(int i = 0; i < halfway; i++){ temp2[i] = two[i]; } for(int i = 0; i < lowest.getPopulation().length; i++){ System.out.print(temp2[i]); } }

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• Ideal backup appliance for backup software like Bacula?

  - by Ricket

  I'm at a small company and we (the IT department of two) manage <100 client computers and a handful of servers. Currently we're using a company's appliance to handle backup; it does a small backup every night and a full backup every weekend, and a guy comes on Wednesday to take an offsite backup drive (and gives back last week's drive to swap with it). The backup is done only on the servers' hard drives, because our client computers and employees make sure not to store anything worthwhile on their own computers. So it's a pretty simple situation. Lately this system, mainly the appliance, has been having problems, so we are looking for an alternative. I'm researching other companies but also looking into what we might expect from trying to do this ourselves. There will undoubtedly be a large learning curve, but hey, that's what serverfault is for, right? :) So anyway I was looking at Bacula. Feature list sounds great, documentation is plentiful, but it's only software. So my question is, what is the ideal backup server to run the Bacula server software on? And not only the server but other related appliances. Our current backup appliance uses only hard drives, not tape drives. It has several plugged into it at one time, in hotswap bays on the front of the machine. I couldn't help but notice though, it's hardly more than Windows XP with hard drive bays, a PCI eSATA card (which connects to another appliance extension piece with 2 more bays), and their software. Since the company will take back their appliance if/when we cancel with them, where can I go to configure a server with these kinds of things? And should I consider switching to tape drives? What other concerns should I be thinking about when I pick out hardware for a backup server? Maybe I'm being naive, I'm sure Dell (and any other computer company) sells them in the small business section of their website, but I wanted to make sure that there's not some other more recommended place that other companies are getting their hardware from, and that I don't need anything special for Bacula.

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• Best available technology for layered disk cache in linux

  - by SpliFF

  I've just bought a 6-core Phenom with 16G of RAM. I use it primarily for compiling and video encoding (and occassional web/db). I'm finding all activities get disk-bound and I just can't keep all 6 cores fed. I'm buying an SSD raid to sit between the HDD and tmpfs. I want to setup a "layered" filesystem where reads are cached on tmpfs but writes safely go through to the SSD. I want files (or blocks) that haven't been read lately on the SSD to then be written back to a HDD using a compressed FS or block layer. So basically reads: - Check tmpfs - Check SSD - Check HD And writes: - Straight to SSD (for safety), then tmpfs (for speed) And periodically, or when space gets low: - Move least frequently accessed files down one layer. I've seen a few projects of interest. CacheFS, cachefsd, bcache seem pretty close but I'm having trouble determining which are practical. bcache seems a little risky (early adoption), cachefs seems tied to specific network filesystems. There are "union" projects unionfs and aufs that let you mount filesystems over each other (USB device over a DVD usually) but both are distributed as a patch and I get the impression this sort of "transparent" mounting was going to become a kernel feature rather than a FS. I know the kernel has a built-in disk cache but it doesn't seem to work well with compiling. I see a 20x speed improvement when I move my source files to tmpfs. I think it's because the standard buffers are dedicated to a specific process and compiling creates and destroys thousands of processes during a build (just guessing there). It looks like I really want those files precached. I've read tmpfs can use virtual memory. In that case is it practical to create a giant tmpfs with swap on the SSD? I don't need to boot off the resulting layered filesystem. I can load grub, kernel and initrd from elsewhere if needed. So that's the background. The question has several components I guess: Recommended FS and/or block layer for the SSD and compressed HDD. Recommended mkfs parameters (block size, options etc...) Recommended cache/mount technology to bind the layers transparently Required mount parameters Required kernel options / patches, etc..

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• PHP-FPM High Memory Usage

  - by Ruel

  I have a wordpress blog, that uses WP-SuperCache, and normally I get 100 visitors per day. With nginx + php-fpm it's blazing fast, and I have no regrets. One thing i noticed, php-fpm takes a lot of memory: top - 09:20:43 up 5 days, 15:53, 1 user, load average: 0.00, 0.00, 0.00 Tasks: 26 total, 1 running, 25 sleeping, 0 stopped, 0 zombie Cpu(s): 0.0%us, 0.0%sy, 0.0%ni,100.0%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 1048576k total, 329956k used, 718620k free, 0k buffers Swap: 0k total, 0k used, 0k free, 0k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 10226 www-data 15 0 145m 52m 4584 S 0.0 5.1 0:07.55 php-fpm 10223 www-data 16 0 141m 48m 4692 S 0.0 4.8 0:08.70 php-fpm 20277 www-data 15 0 138m 46m 4368 S 0.0 4.5 0:07.55 php-fpm 20259 www-data 15 0 133m 41m 4600 S 0.0 4.0 0:06.68 php-fpm 12201 www-data 15 0 133m 41m 4632 S 0.0 4.0 0:08.31 php-fpm 11586 www-data 15 0 132m 40m 4292 S 0.0 3.9 0:03.27 php-fpm 29822 www-data 15 0 128m 36m 4356 S 0.0 3.6 0:05.26 php-fpm 28427 mysql 15 0 200m 7300 4764 S 0.0 0.7 0:47.89 mysqld 10202 root 18 0 98.3m 4320 1204 S 0.0 0.4 0:03.80 php-fpm 22524 root 18 0 86064 3396 2652 S 0.0 0.3 0:16.74 sshd 9882 www-data 18 0 42052 2572 804 S 0.0 0.2 0:27.52 nginx 9884 www-data 18 0 42052 2560 804 S 0.0 0.2 0:26.26 nginx 9881 www-data 18 0 42064 2524 804 S 0.0 0.2 0:29.24 nginx 9879 www-data 18 0 42032 2480 804 S 0.0 0.2 0:29.58 nginx 23771 root 15 0 12176 1820 1316 S 0.0 0.2 0:00.08 bash 28344 root 22 0 11932 1416 1184 S 0.0 0.1 0:00.00 mysqld_safe 18167 root 16 0 62628 1208 648 S 0.0 0.1 0:00.55 sshd 25941 root 15 0 12612 1192 928 R 0.0 0.1 0:02.21 top 11573 root 15 0 20876 1168 592 S 0.0 0.1 0:00.67 crond 9878 root 18 0 41000 1112 284 S 0.0 0.1 0:00.00 nginx 21736 root 23 0 21648 936 716 S 0.0 0.1 0:00.00 xinetd 11585 root 18 0 46748 816 428 S 0.0 0.1 0:00.00 saslauthd 14125 root 12 -4 12768 768 452 S 0.0 0.1 0:00.00 udevd 1 root 18 0 10352 728 616 S 0.0 0.1 0:17.93 init 24564 root 15 0 5912 680 544 S 0.0 0.1 0:01.90 syslogd 11618 root 18 0 46748 548 160 S 0.0 0.1 0:00.00 saslauthd Here's my php-fpm config: [global] pid = run/php-fpm.pid error_log = log/php-fpm.log log_level = notice [www] listen = 127.0.0.1:9000 user = www-data group = www-data pm = dynamic pm.max_children = 50 pm.start_servers = 3 pm.min_spare_servers = 3 pm.max_spare_servers = 10 pm.max_requests = 500 Sometimes it goes up to 400MB. And I'm planning to add a new website on my VPS. Is this normal?

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• Secure ldap problem

  - by neverland

  I have tried to config my openldap to have secure connection by using openssl on Debian5. By the way, I got trouble during the below command. ldap:/etc/ldap# slapd -h 'ldap:// ldaps://' -d1 >>> slap_listener(ldaps://) connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_read(15): unable to get TLS client DN, error=49 id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 ber_get_next ber_get_next on fd 15 failed errno=0 (Success) connection_closing: readying conn=7 sd=15 for close connection_close: conn=7 sd=15 Then I have search for "unable to get TLS client DN, error=49 id=7" but it seems no where has a good solution to this yet. Please help. Thanks # Well, I try to fix something to get it work but now I got this ldap:~# slapd -d 256 -f /etc/openldap/slapd.conf @(#) $OpenLDAP: slapd 2.4.11 (Nov 26 2009 09:17:06) $ root@SD6-Casa:/tmp/buildd/openldap-2.4.11/debian/build/servers/slapd could not stat config file "/etc/openldap/slapd.conf": No such file or directory (2) slapd stopped. connections_destroy: nothing to destroy. What should I do now? log : ldap:~# /etc/init.d/slapd start Starting OpenLDAP: slapd - failed. The operation failed but no output was produced. For hints on what went wrong please refer to the system's logfiles (e.g. /var/log/syslog) or try running the daemon in Debug mode like via "slapd -d 16383" (warning: this will create copious output). Below, you can find the command line options used by this script to run slapd. Do not forget to specify those options if you want to look to debugging output: slapd -h 'ldaps:///' -g openldap -u openldap -f /etc/ldap/slapd.conf ldap:~# tail /var/log/messages Feb 8 16:53:27 ldap kernel: [ 123.582757] intel8x0_measure_ac97_clock: measured 57614 usecs Feb 8 16:53:27 ldap kernel: [ 123.582801] intel8x0: measured clock 172041 rejected Feb 8 16:53:27 ldap kernel: [ 123.582825] intel8x0: clocking to 48000 Feb 8 16:53:27 ldap kernel: [ 131.469687] Adding 240932k swap on /dev/hda5. Priority:-1 extents:1 across:240932k Feb 8 16:53:27 ldap kernel: [ 133.432131] EXT3 FS on hda1, internal journal Feb 8 16:53:27 ldap kernel: [ 135.478218] loop: module loaded Feb 8 16:53:27 ldap kernel: [ 141.348104] eth0: link up, 100Mbps, full-duplex Feb 8 16:53:27 ldap rsyslogd: [origin software="rsyslogd" swVersion="3.18.6" x-pid="1705" x-info="http://www.rsyslog.com"] restart Feb 8 16:53:34 ldap kernel: [ 159.217171] NET: Registered protocol family 10 Feb 8 16:53:34 ldap kernel: [ 159.220083] lo: Disabled Privacy Extensions

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• Apache taking up too much CPU

  - by andrewtweber

  I'm trying to manage a server on Amazon for a network of sites that receives about 100 million pageviews per month. Unfortunately, nobody out of my team of 5 developers has much server admin experience. Right now we have the MaxClients set to 1400. Currently our traffic is about average, and we have 1150 total Apache processes running, which use about 2% CPU each! Out of those 1150, 800 of them are currently sleeping, but still taking up CPU. I'm sure there are ways to optimize this. I have a few thoughts: It appears Apache is creating a new process for every single connection. Is this normal? Is there a way to more quickly kill the sleeping processes? Should we turn KeepAlive on? Each page loads about 15-20 medium-sized graphics and a lot of javascript/css. So, here's our Apache setup. We do plan on contracting a server admin asap, but I would really appreciate some advice until we can find someone. Timeout 25 KeepAlive Off MaxKeepAliveRequests 200 KeepAliveTimeout 5 <IfModule prefork.c> StartServers 100 MinSpareServers 20 MaxSpareServers 50 ServerLimit 1400 MaxClients 1400 MaxRequestsPerChild 5000 </IfModule> <IfModule worker.c> StartServers 4 MaxClients 400 MinSpareThreads 25 MaxSpareThreads 75 ThreadsPerChild 25 MaxRequestsPerChild 0 </IfModule> Full top output: top - 23:44:36 up 1 day, 6:43, 4 users, load average: 379.14, 379.17, 377.22 Tasks: 1153 total, 379 running, 774 sleeping, 0 stopped, 0 zombie Cpu(s): 71.9%us, 26.2%sy, 0.0%ni, 0.0%id, 0.0%wa, 0.0%hi, 1.9%si, 0.0%st Mem: 70343000k total, 23768448k used, 46574552k free, 527376k buffers Swap: 0k total, 0k used, 0k free, 10054596k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1756 mysql 20 0 10.2g 1.8g 5256 S 19.8 2.7 904:41.13 mysqld 21515 apache 20 0 396m 18m 4512 R 2.1 0.0 0:34.42 httpd 21524 apache 20 0 396m 18m 4032 R 2.1 0.0 0:32.63 httpd 21544 apache 20 0 394m 16m 4084 R 2.1 0.0 0:36.38 httpd 21643 apache 20 0 396m 18m 4360 R 2.1 0.0 0:34.20 httpd 21817 apache 20 0 396m 17m 4064 R 2.1 0.0 0:38.22 httpd 22134 apache 20 0 395m 17m 4584 R 2.1 0.0 0:35.62 httpd 22211 apache 20 0 397m 18m 4104 R 2.1 0.0 0:29.91 httpd 22267 apache 20 0 396m 18m 4636 R 2.1 0.0 0:35.29 httpd 22334 apache 20 0 397m 18m 4096 R 2.1 0.0 0:34.86 httpd 22549 apache 20 0 395m 17m 4056 R 2.1 0.0 0:31.01 httpd 22612 apache 20 0 397m 19m 4152 R 2.1 0.0 0:34.34 httpd 22721 apache 20 0 396m 18m 4060 R 2.1 0.0 0:32.76 httpd 22932 apache 20 0 396m 17m 4020 R 2.1 0.0 0:37.34 httpd 22933 apache 20 0 396m 18m 4060 R 2.1 0.0 0:34.77 httpd 22949 apache 20 0 396m 18m 4060 R 2.1 0.0 0:34.61 httpd 22956 apache 20 0 402m 24m 4072 R 2.1 0.0 0:41.45 httpd

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• Ububtu server 12.04 auto installation freezes at kickseeding running if ks.cfg has post scripts

  - by john206

  I'm trying to make a custom Ubuntu Server iso file. Kickstart file (ks.cfg) runs smooth when there is no %post in the file and Ubuntu installs correctly with ks configuration. Installation finishes installing base, apt, grub and It echos: Kickseed Running... and it freezes @ 0% I thought may be apt-get update doesnt work in ks file, I tried to install other apps like apache2 but no luck I have created dozen iso images and installed them in Virtual Box.I have been googling for 3 days and checked out ubuntu forums but haven't figured out the issue. I appreciate your help. This is how I made the iso image. My ks.file and txt.cfg files located in isolinux directory: root@ubuntu:/home/work mount -o loop ubuntu-12.04-amd64.iso original-iso/ rsync -a original-iso/ custom-iso/ cp ks.cfg custom-iso/isolinux/ cp txt.cfg custom-iso/isolinux/ chmod -R 777 custom-iso/ #Creating Iso image mkisofs -D -r -V “$IMAGE_NAME” -cache-inodes -J -l -b isolinux/isolinux.bin -c isolinux/boot.cat -no-emul-boot -boot-load-size 4 -boot-info-table -o ~/ubuntu-12.04-alternate-custom-amd64.iso custom-iso/ ks.cfg #Generated by Kickstart Configurator #platform=AMD64 or Intel EM64T #System language lang en_US #Language modules to install langsupport en_US #System keyboard keyboard us #System mouse mouse #System timezone timezone America/Los_Angeles #Root password rootpw --iscrypted somethingsomething #Initial user user ubuntu --fullname "ubuntu" --iscrypted --password somethingsomething. #Reboot after installation reboot #Use text mode install text #Install OS instead of upgrade install #Use CDROM installation media cdrom #System bootloader configuration bootloader --location=mbr #Clear the Master Boot Record zerombr yes #Partition clearing information clearpart --all --initlabel #Disk partitioning information part /boot --size 128 --fstype=ext3 --asprimary part / --size 512 --fstype=ext3 --asprimary part swap --size 512 part /tmp --size 512 --fstype=ext3 part /var --size 512 --fstype=ext3 part /usr --size 4096 --fstype=ext3 part /home --size 2048 --fstype=ext3 #System authorization infomation auth --useshadow --enablemd5 #Network information network --bootproto=dhcp --device=eth0 #Firewall configuration firewall --disabled --http --ftp --ssh #X Window System configuration information xconfig --depth=32 --resolution=1024x768 --defaultdesktop=GNOME %post apt-get update mkdir /home/user txt.cfg default autoinstall label autoinstall menu label ^Install Custom Ubuntu Server kernel /install/vmlinuz append file=/cdrom/preseed/ubuntu-server.seed initrd=/install/initrd.gz quiet ks=cdrom:/isolinux/ks.cfg -- label install menu label ^Install Ubuntu Server kernel /install/vmlinuz append file=/cdrom/preseed/ubuntu-server.seed vga=788 initrd=/install/initrd.gz quiet -- label cloud menu label ^Multiple server install with MAAS kernel /install/vmlinuz append modules=maas-enlist-udeb vga=788 initrd=/install/initrd.gz quiet -- label check menu label ^Check disc for defects kernel /install/vmlinuz append MENU=/bin/cdrom-checker-menu vga=788 initrd=/install/initrd.gz quiet -- label memtest menu label Test ^memory kernel /install/mt86plus label hd menu label ^Boot from first hard disk localboot 0x80

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• Nginx and PHP-FPM running out of connections

  - by E3pO

  I keep running into errors like these, [02-Jun-2012 01:52:04] WARNING: [pool www] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 8 children, there are 19 idle, and 49 total children [02-Jun-2012 01:52:05] WARNING: [pool www] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 16 children, there are 19 idle, and 50 total children [02-Jun-2012 01:52:06] WARNING: [pool www] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 19 idle, and 51 total children [02-Jun-2012 03:10:51] WARNING: [pool www] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 8 children, there are 18 idle, and 91 total children I changed my settings for php-fpm to these, pm.max_children = 150 (It was at 100, i got a max_children reached and upped to 150) pm.start_servers = 75 pm.min_spare_servers = 20 pm.max_spare_servers = 150 Resulting in [02-Jun-2012 01:39:19] WARNING: [pool www] server reached pm.max_children setting (150), consider raising it I've just launched a new website that is getting a conciderable amount of traffic on it. This traffic is legitimate and users are getting 504 gateway timeouts when the limit is reached. I have limited connections to my server with IPTABLES and I'm running fail2ban and keeping track of nginx access logs. The traffic is all legitimate, i'm just running out of room for users. I'm currently running on a dual core box with ubuntu 64bit. free total used free shared buffers cached Mem: 6114284 5726984 387300 0 141612 4985384 -/+ buffers/cache: 599988 5514296 Swap: 524284 5804 518480 My php.ini max_input_time = 60 My nginx config is worker_processes 4; pid /var/run/nginx.pid; events { worker_connections 19000; # multi_accept on; } worker_rlimit_nofile 20000; #each connection needs a filehandle (or 2 if you are proxying) client_max_body_size 30M; client_body_timeout 10; client_header_timeout 10; keepalive_timeout 5 5; send_timeout 10; location ~ \.php$ { try_files $uri /er/error.php; fastcgi_split_path_info ^(.+\.php)(/.+)$; fastcgi_connect_timeout 60; fastcgi_send_timeout 180; fastcgi_read_timeout 180; fastcgi_buffer_size 128k; fastcgi_buffers 256 16k; fastcgi_busy_buffers_size 256k; fastcgi_temp_file_write_size 256k; fastcgi_max_temp_file_size 0; fastcgi_intercept_errors on; fastcgi_pass unix:/tmp/php5-fpm.sock; fastcgi_index index.php; include fastcgi_params; } What can I do to stop running out of connections? Why does this keep occurring? I'm monitoring my traffic on Google Analytics realtime and when the user count gets above about 120 my php-fpm.log is full of these warnings..

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• MySQL daemon keeps terminating unexpectedly

  - by Yehia A.Salam

  The MySQL daemon on my CentOS server keeps crashing, i got the logs from /var/logs/mysqld but still i am not sure how to fix this: 121114 16:22:56 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended 121114 21:55:11 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql 121114 21:55:11 [Note] Plugin 'FEDERATED' is disabled. 121114 21:55:11 InnoDB: The InnoDB memory heap is disabled 121114 21:55:11 InnoDB: Mutexes and rw_locks use GCC atomic builtins 121114 21:55:11 InnoDB: Compressed tables use zlib 1.2.3 121114 21:55:11 InnoDB: Using Linux native AIO 121114 21:55:11 InnoDB: Initializing buffer pool, size = 128.0M 121114 21:55:11 InnoDB: Completed initialization of buffer pool 121114 21:55:11 InnoDB: highest supported file format is Barracuda. InnoDB: The log sequence number in ibdata files does not match InnoDB: the log sequence number in the ib_logfiles! 121114 21:55:11 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... 121114 21:55:12 InnoDB: Waiting for the background threads to start 121114 21:55:13 InnoDB: 1.1.6 started; log sequence number 77177262 121114 21:55:13 [Note] Event Scheduler: Loaded 0 events 121114 21:55:13 [Note] /usr/libexec/mysqld: ready for connections. Version: '5.5.12' socket: '/var/lib/mysql/mysql.sock' port: 3306 MySQL Community Server (GPL) by Remi 121115 00:19:44 mysqld_safe Number of processes running now: 0 121115 00:19:44 mysqld_safe mysqld restarted 121115 0:19:47 [Note] Plugin 'FEDERATED' is disabled. 121115 0:19:47 InnoDB: The InnoDB memory heap is disabled 121115 0:19:47 InnoDB: Mutexes and rw_locks use GCC atomic builtins 121115 0:19:47 InnoDB: Compressed tables use zlib 1.2.3 121115 0:19:47 InnoDB: Using Linux native AIO 121115 0:19:47 InnoDB: Initializing buffer pool, size = 128.0M InnoDB: mmap(137363456 bytes) failed; errno 12 121115 0:19:47 InnoDB: Completed initialization of buffer pool 121115 0:19:47 InnoDB: Fatal error: cannot allocate memory for the buffer pool 121115 0:19:47 [ERROR] Plugin 'InnoDB' init function returned error. 121115 0:19:47 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed. 121115 0:19:47 [ERROR] Unknown/unsupported storage engine: InnoDB 121115 0:19:47 [ERROR] Aborting Edit #1 total used free shared buffers cached Mem: 496 370 126 0 24 110 -/+ buffers/cache: 234 261 Swap: 1023 9 1014 Edit #2 Also, largest table in my mysql is 20MB, so my the memory used should be pretty moderate. SELECT CONCAT(table_schema, '.', table_name), CONCAT(ROUND(table_rows / 1000000, 2), 'M') rows, CONCAT(ROUND(data_length / ( 1024 * 1024 * 1024 ), 2), 'G') DATA, CONCAT(ROUND(index_length / ( 1024 * 1024 * 1024 ), 2), 'G') idx, CONCAT(ROUND(( data_length + index_length ) / ( 1024 * 1024 * 1024 ), 2), 'G') total_size, ROUND(index_length / data_length, 2) idxfrac FROM information_schema.TABLES ORDER BY data_length + index_length DESC LIMIT 10;

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• Debian Lenny syslog kernel messages

  - by andre

  Hello everyone. I've recently got a disk swap on my colo'd box. I've been getting these messages from the kernel (viewed on the terminal and later on /var/log/messages Mar 22 09:04:29 seedbox kernel: [72710.442831] Pid: 6527, comm: sshd Not tainted 2.6.26-2-amd64 #1 Mar 22 09:04:29 seedbox kernel: [72710.442831] RIP: 0010:[<ffffffff802876b9>] [<ffffffff802876b9>] page_remove_rmap+0xff/0x11a Mar 22 09:04:29 seedbox kernel: [72710.442831] RSP: 0018:ffff8100b75d1da8 EFLAGS: 00010246 Mar 22 09:04:29 seedbox kernel: [72710.442831] RAX: 0000000000000000 RBX: ffffe2000185e3e8 RCX: 0000000000008e53 Mar 22 09:04:29 seedbox kernel: [72710.442831] RDX: ffff810080a4c000 RSI: 0000000000000046 RDI: 0000000000000282 Mar 22 09:04:29 seedbox kernel: [72710.442831] RBP: ffff8100379838c8 R08: 00007f6d11ba4000 R09: ffff8100b75d1800 Mar 22 09:04:29 seedbox kernel: [72710.442831] R10: 0000000000000000 R11: 0000010000000010 R12: ffff8100bb446b00 Mar 22 09:04:29 seedbox kernel: [72710.442831] R13: 00007f6d11ba4000 R14: ffffe2000185e3e8 R15: ffff810001023b80 Mar 22 09:04:29 seedbox kernel: [72710.442831] FS: 0000000000000000(0000) GS:ffffffff8053d000(0000) knlGS:0000000000000000 Mar 22 09:04:29 seedbox kernel: [72710.442831] CS: 0010 DS: 0000 ES: 0000 CR0: 0000000080050033 Mar 22 09:04:29 seedbox kernel: [72710.442831] CR2: 00007f6d1195b480 CR3: 0000000037904000 CR4: 00000000000006e0 Mar 22 09:04:29 seedbox kernel: [72710.442831] DR0: 0000000000000000 DR1: 0000000000000000 DR2: 0000000000000000 Mar 22 09:04:29 seedbox kernel: [72710.442831] DR3: 0000000000000000 DR6: 00000000ffff0ff0 DR7: 0000000000000400 Mar 22 09:04:29 seedbox kernel: [72710.442831] Process sshd (pid: 6527, threadinfo ffff8100b75d0000, task ffff8100bd0a0990) Mar 22 09:04:29 seedbox kernel: [72710.442831] Stack: 800000006f65b045 800000006f65b045 ffff8100bc013d20 ffffffff8027f69a Mar 22 09:04:29 seedbox kernel: [72710.442831] ffff810100000000 0000000000000000 ffff8100b75d1eb8 ffffffffffffffff Mar 22 09:04:29 seedbox kernel: [72710.442831] 0000000000000000 ffff8100379838c8 ffff8100b75d1ec0 0000000000296460 Mar 22 09:04:29 seedbox kernel: [72710.442831] Call Trace: Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff8027f69a>] ? unmap_vmas+0x4c9/0x885 Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff80283ac8>] ? exit_mmap+0x7c/0xf0 Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff80232538>] ? mmput+0x2c/0xa2 Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff802378ad>] ? do_exit+0x25a/0x6a6 Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff802afa45>] ? mntput_no_expire+0x20/0x117 Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff80237d66>] ? do_group_exit+0x6d/0x9d Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff80237da8>] ? sys_exit_group+0x12/0x16 Mar 22 09:04:29 seedbox kernel: [72710.442831] [<ffffffff8020beda>] ? system_call_after_swapgs+0x8a/0x8f Mar 22 09:04:29 seedbox kernel: [72710.442831] Mar 22 09:04:29 seedbox kernel: [72710.442831] Mar 22 09:04:29 seedbox kernel: [72710.442831] RSP <ffff8100b75d1da8> Mar 22 09:04:29 seedbox kernel: [72710.442831] ---[ end trace e8a2f3b263482c6e ]--- I don't know what the problem is or how to debug / track it, hope you guys can help.. let me know if you need more information.

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• external hard drive is no longer recognized, gives buffer I/O errors

  - by BioGeek

  Hi all, The external hard drive which contains all my photos and where I backed-up all my important documents is no longer recognized. It is a three month old 500GB Iomage Prestige Desktop Hard Drive. When I plug it in, it is recognised as a USB device, because it shows up when I type lsusb, but dmesg gives this error message. [19712.013250] usb 2-2: new high speed USB device using ehci_hcd and address 21 [19712.145347] usb 2-2: configuration #1 chosen from 1 choice [19712.147214] scsi25 : SCSI emulation for USB Mass Storage devices [19712.147514] usb-storage: device found at 21 [19712.147519] usb-storage: waiting for device to settle before scanning [19717.148978] usb-storage: device scan complete [19717.149527] scsi 25:0:0:0: Direct-Access ST350082 0AS PQ: 0 ANSI: 2 CCS [19717.151020] sd 25:0:0:0: Attached scsi generic sg2 type 0 [19717.151685] sd 25:0:0:0: [sdb] 976773168 512-byte logical blocks: (500 GB/465 GiB) [19717.160402] sd 25:0:0:0: [sdb] Write Protect is off [19717.160412] sd 25:0:0:0: [sdb] Mode Sense: 34 00 00 00 [19717.160418] sd 25:0:0:0: [sdb] Assuming drive cache: write through [19717.165685] sd 25:0:0:0: [sdb] Assuming drive cache: write through [19717.165691] sdb: sdb1 [19719.171808] sd 25:0:0:0: [sdb] Assuming drive cache: write through [19719.171818] sd 25:0:0:0: [sdb] Attached SCSI disk [19737.430998] sd 25:0:0:0: [sdb] Unhandled sense code [19737.431007] sd 25:0:0:0: [sdb] Result: hostbyte=DID_OK driverbyte=DRIVER_SENSE [19737.431016] sd 25:0:0:0: [sdb] Sense Key : Medium Error [current] [19737.431027] sd 25:0:0:0: [sdb] Add. Sense: Unrecovered read error [19737.431038] end_request: I/O error, dev sdb, sector 6160463 [19737.431050] Buffer I/O error on device sdb1, logical block 6160400 [19737.431060] Buffer I/O error on device sdb1, logical block 6160401 [19737.431067] Buffer I/O error on device sdb1, logical block 6160402 [19737.431075] Buffer I/O error on device sdb1, logical block 6160403 [19737.431082] Buffer I/O error on device sdb1, logical block 6160404 [19737.431088] Buffer I/O error on device sdb1, logical block 6160405 [19737.431096] Buffer I/O error on device sdb1, logical block 6160406 [19737.431102] Buffer I/O error on device sdb1, logical block 6160407 [19737.431114] Buffer I/O error on device sdb1, logical block 6160408 [19737.431121] Buffer I/O error on device sdb1, logical block 6160409 [19737.712183] sd 6:0:0:0: [sdb] Unhandled sense code [19737.712191] sd 6:0:0:0: [sdb] Result: hostbyte=DID_ERROR driverbyte=DRIVER_SENSE [19737.712200] sd 6:0:0:0: [sdb] Sense Key : Hardware Error [current] [19737.712210] sd 6:0:0:0: [sdb] Add. Sense: No additional sense information [19737.712222] end_request: I/O error, dev sdb, sector 0 [19737.712232] Buffer I/O error on device sdb, logical block 0 Neither does the external drive show when I use fdisk: jeroen@phalacrocorax:~$ sudo fdisk -l [sudo] password for jeroen: Disk /dev/sda: 160.0 GB, 160041885696 bytes 255 heads, 63 sectors/track, 19457 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Disk identifier: 0x000341ad Device Boot Start End Blocks Id System /dev/sda1 * 1 18714 150320173+ 83 Linux /dev/sda2 18715 19457 5968147+ 5 Extended /dev/sda5 18715 19457 5968116 82 Linux swap / Solaris` I popped the disk out of the casing put it on a SATA connect internally and then tried the file recovery programs testdisk/photorec and SpinRite, but both failed because they couldn't recognize the external harddisk. Do I have any other options?

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• Server load spikes several times a day, load average for the past month is 5 times the load average all year

  - by AMF

  My Munin notifications set up for our (Debian) LAMP cluster have been notifying me continuously that our load on our production machine has been at dangerous levels. While the average load all year typically runs between 2 and 8, the load in the past month and only the past month -- has been skyrocketing to 10, 18, and occasionally even 50-60. The spikes last only 5-10 minutes at a time and occur about every 2-3 hours. The spikes do not effect performance only because I have a script that sends traffic off our server to a mirror CDN when the load goes above 10. I've looked for cron jobs that correlate with this timeframe but there is nothing I can see that would cause this. Site traffic is also normal (we receive about 200K visits per day). I'm also trying to think of anything I've changed around the time this problem began, and I really cannot think of anything. This is probably not much to go on. Maybe there is a clue in the top print-out (below) that I'm not seeing. How do I proceed to find the cause? -- Typical top when the load is NOT spiking: top - 11:13:09 up 472 days, 25 min, 1 user, load average: 6.08, 4.29, 3.80 Tasks: 105 total, 1 running, 104 sleeping, 0 stopped, 0 zombie Cpu(s): 41.2%us, 5.8%sy, 0.0%ni, 49.5%id, 2.7%wa, 0.1%hi, 0.7%si, 0.0%st Mem: 3369592k total, 2166980k used, 1202612k free, 559504k buffers Swap: 2650684k total, 1892k used, 2648792k free, 1129116k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 32046 apache 15 0 36300 12m 9828 S 20 0.4 0:01.97 apache2 32679 apache 15 0 36568 13m 10m S 19 0.4 0:01.69 apache2 31441 apache 15 0 36616 13m 10m S 19 0.4 0:04.13 apache2 31477 apache 15 0 36596 13m 9.8m S 15 0.4 0:01.99 apache2 31993 apache 15 0 36876 16m 12m S 12 0.5 0:02.01 apache2 31782 apache 15 0 36836 14m 10m S 8 0.4 0:02.17 apache2 32198 apache 15 0 36536 13m 10m S 7 0.4 0:01.59 apache2 880 apache 15 0 36508 9708 6236 S 7 0.3 0:00.42 apache2 31945 apache 17 0 36876 16m 13m S 5 0.5 0:03.17 apache2 32197 apache 16 0 36636 10m 7504 S 5 0.3 0:02.70 apache2 32326 apache 15 0 37024 11m 7632 S 5 0.3 0:02.15 apache2 32565 apache 15 0 37280 13m 9.8m S 5 0.4 0:03.75 apache2 32676 apache 15 0 36896 16m 12m S 4 0.5 0:00.95 apache2 32678 apache 15 0 36536 12m 9692 S 4 0.4 0:02.27 apache2 974 apache 16 0 37064 9888 6016 D 4 0.3 0:00.13 apache2 32150 apache 16 0 36832 13m 10m S 3 0.4 0:01.74 apache2 31780 apache 16 0 36848 11m 7660 S 3 0.3 0:02.87 apache2

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• Quantifying the effects of partition mis-alignment

  - by Matt

  I'm experiencing some significant performance issues on an NFS server. I've been reading up a bit on partition alignment, and I think I have my partitions mis-aligned. I can't find anything that tells me how to actually quantify the effects of mis-aligned partitions. Some of the general information I found suggests the performance penalty can be quite high (upwards of 60%) and others say it's negligible. What I want to do is determine if partition alignment is a factor in this server's performance problems or not; and if so, to what degree? So I'll put my info out here, and hopefully the community can confirm if my partitions are indeed mis-aligned, and if so, help me put a number to what the performance cost is. Server is a Dell R510 with dual E5620 CPUs and 8 GB RAM. There are eight 15k 2.5” 600 GB drives (Seagate ST3600057SS) configured in hardware RAID-6 with a single hot spare. RAID controller is a Dell PERC H700 w/512MB cache (Linux sees this as a LSI MegaSAS 9260). OS is CentOS 5.6, home directory partition is ext3, with options “rw,data=journal,usrquota”. I have the HW RAID configured to present two virtual disks to the OS: /dev/sda for the OS (boot, root and swap partitions), and /dev/sdb for a big NFS share: [root@lnxutil1 ~]# parted -s /dev/sda unit s print Model: DELL PERC H700 (scsi) Disk /dev/sda: 134217599s Sector size (logical/physical): 512B/512B Partition Table: msdos Number Start End Size Type File system Flags 1 63s 465884s 465822s primary ext2 boot 2 465885s 134207009s 133741125s primary lvm [root@lnxutil1 ~]# parted -s /dev/sdb unit s print Model: DELL PERC H700 (scsi) Disk /dev/sdb: 5720768639s Sector size (logical/physical): 512B/512B Partition Table: gpt Number Start End Size File system Name Flags 1 34s 5720768606s 5720768573s lvm Edit 1 Using the cfq IO scheduler (default for CentOS 5.6): # cat /sys/block/sd{a,b}/queue/scheduler noop anticipatory deadline [cfq] noop anticipatory deadline [cfq] Chunk size is the same as strip size, right? If so, then 64kB: # /opt/MegaCli -LDInfo -Lall -aALL -NoLog Adapter #0 Number of Virtual Disks: 2 Virtual Disk: 0 (target id: 0) Name:os RAID Level: Primary-6, Secondary-0, RAID Level Qualifier-3 Size:65535MB State: Optimal Stripe Size: 64kB Number Of Drives:7 Span Depth:1 Default Cache Policy: WriteBack, ReadAdaptive, Direct, No Write Cache if Bad BBU Current Cache Policy: WriteThrough, ReadAdaptive, Direct, No Write Cache if Bad BBU Access Policy: Read/Write Disk Cache Policy: Disk's Default Number of Spans: 1 Span: 0 - Number of PDs: 7 ... physical disk info removed for brevity ... Virtual Disk: 1 (target id: 1) Name:share RAID Level: Primary-6, Secondary-0, RAID Level Qualifier-3 Size:2793344MB State: Optimal Stripe Size: 64kB Number Of Drives:7 Span Depth:1 Default Cache Policy: WriteBack, ReadAdaptive, Direct, No Write Cache if Bad BBU Current Cache Policy: WriteThrough, ReadAdaptive, Direct, No Write Cache if Bad BBU Access Policy: Read/Write Disk Cache Policy: Disk's Default Number of Spans: 1 Span: 0 - Number of PDs: 7 If it's not obvious, virtual disk 0 corresponds to /dev/sda, for the OS; virtual disk 1 is /dev/sdb (the exported home directory tree).

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• Slow Windows Explorer on Windows 7

  - by MadBoy

  I have Laptop with i7 (4 cores), 8GB ram and SSD OCZ Vertex 3 MaxIOPS which in testing that I did just now does 400mb/s+ read/write. However the responsiveness of Windows Explorer is far from being perfect. Opening up Computer, Documents, going into folders is very slow (1-5seconds). I don't have any viruses or spyware and I have tried changing properties to optimize view for General Items. I tried disabling Search Indexer but it made search in Outlook 2010 crawl and didn't bring any other effect. Even double clicking on file takes some time to open things up (like clicking a Word document). I don't have any drives mapped, my computer is not joined to domain. I have multiple VPN connections that I connect to but they all have disabled default gateways. I tried using CC Cleaner or some Windows 7 Tweaks app to disable some things. I am power user using Visual Studio, Tortoise SVN and other developer/administration apps. Any non obvious ideas? Edit: So I've been trying to pinpoint where the issue comes from and it seems that straight after reboot Windows Explorer opens very fast, when I load 3-4 programs (Royal TS, Visual Studio, Outlook) it's noticeably slower and the more programs I have it gets worse. After I start closing programs it starts working better and if I leave 2 open it's fast again. I tried doing some research with DiskMon and other programs from sysinternals but couldn't find anything suspicious. Below are stats during normal usage with a lots of programs open: - Ram usage with a lot of programs open and no swap file (i disabled it for testing): 6.95GB - CPU usage: 15%, none of the cores takes more then 50% (I have VS 2010 open x 4) HD Tune Pro: OCZ-VERTEX3 MI Benchmark Test capacity: full Read transfer rate Transfer Rate Minimum : 363.9 MB/s Transfer Rate Maximum : 505.5 MB/s Transfer Rate Average : Access Time : Burst Rate : CPU Usage : HD Tune Pro: OCZ-VERTEX3 MI File Benchmark Drive C: Transfer rate test File Size: 500 MB Sequential read 484102 KB/s Sequential write 444714 KB/s Random read 7779 IOPS Random write 16888 IOPS Random read (queue depth = 32) 73007 IOPS Random write (queue depth = 32) 69790 IOPS HD Tune Pro: OCZ-VERTEX3 MI Random Access Test capacity: full Read test Transfer size operations / sec avg. access time max. access time avg. speed 512 bytes 3260 IOPS 0.306 ms 2.106 ms 1.592 MB/s 4 KB 4161 IOPS 0.240 ms 2.006 ms 16.256 MB/s 64 KB 2382 IOPS 0.419 ms 2.367 ms 148.934 MB/s 1 MB 449 IOPS 2.225 ms 4.197 ms 449.407 MB/s Random 809 IOPS 1.235 ms 6.551 ms 410.527 MB/s HD Tune Pro: OCZ-VERTEX3 MI Extra Tests Test capacity: full Random seek 3975 IOPS 0.252 ms 1.941 MB/s Random seek 4 KB 4245 IOPS 0.236 ms 16.583 MB/s Butterfly seek 4086 IOPS 0.245 ms 1.995 MB/s Random seek / size 64 KB 3812 IOPS 0.262 ms 58.606 MB/s Random seek / size 8 MB 120 IOPS 8.348 ms 485.737 MB/s Sequential outer 4524 IOPS 0.221 ms 282.721 MB/s Sequential middle 4429 IOPS 0.226 ms 276.818 MB/s Sequential inner 5504 IOPS 0.182 ms 344.000 MB/s Burst rate 4472 IOPS 0.224 ms 279.475 MB/s

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• Secure ldap problem

  - by neverland

  Hi there, I have tried to config my openldap to have secure connection by using openssl on Debian5. By the way, I got trouble during the below command. ldap:/etc/ldap# slapd -h 'ldap:// ldaps://' -d1 >>> slap_listener(ldaps://) connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 connection_read(15): unable to get TLS client DN, error=49 id=7 connection_get(15): got connid=7 connection_read(15): checking for input on id=7 ber_get_next ber_get_next on fd 15 failed errno=0 (Success) connection_closing: readying conn=7 sd=15 for close connection_close: conn=7 sd=15 Then I have search for "unable to get TLS client DN, error=49 id=7" but it seems no where has a good solution to this yet. Please help. Thanks # Well, I try to fix something to get it work but now I got this ldap:~# slapd -d 256 -f /etc/openldap/slapd.conf @(#) $OpenLDAP: slapd 2.4.11 (Nov 26 2009 09:17:06) $ root@SD6-Casa:/tmp/buildd/openldap-2.4.11/debian/build/servers/slapd could not stat config file "/etc/openldap/slapd.conf": No such file or directory (2) slapd stopped. connections_destroy: nothing to destroy. What should I do now? log : ldap:~# /etc/init.d/slapd start Starting OpenLDAP: slapd - failed. The operation failed but no output was produced. For hints on what went wrong please refer to the system's logfiles (e.g. /var/log/syslog) or try running the daemon in Debug mode like via "slapd -d 16383" (warning: this will create copious output). Below, you can find the command line options used by this script to run slapd. Do not forget to specify those options if you want to look to debugging output: slapd -h 'ldaps:///' -g openldap -u openldap -f /etc/ldap/slapd.conf ldap:~# tail /var/log/messages Feb 8 16:53:27 ldap kernel: [ 123.582757] intel8x0_measure_ac97_clock: measured 57614 usecs Feb 8 16:53:27 ldap kernel: [ 123.582801] intel8x0: measured clock 172041 rejected Feb 8 16:53:27 ldap kernel: [ 123.582825] intel8x0: clocking to 48000 Feb 8 16:53:27 ldap kernel: [ 131.469687] Adding 240932k swap on /dev/hda5. Priority:-1 extents:1 across:240932k Feb 8 16:53:27 ldap kernel: [ 133.432131] EXT3 FS on hda1, internal journal Feb 8 16:53:27 ldap kernel: [ 135.478218] loop: module loaded Feb 8 16:53:27 ldap kernel: [ 141.348104] eth0: link up, 100Mbps, full-duplex Feb 8 16:53:27 ldap rsyslogd: [origin software="rsyslogd" swVersion="3.18.6" x-pid="1705" x-info="http://www.rsyslog.com"] restart Feb 8 16:53:34 ldap kernel: [ 159.217171] NET: Registered protocol family 10 Feb 8 16:53:34 ldap kernel: [ 159.220083] lo: Disabled Privacy Extensions

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• How to troubleshoot performance issues of PHP, MySQL and generic I/O

  - by jbx

  I have a WordPress based website running on a shared hosting. Its response time is very decent (around 2s to retrieve the HTML page and 5s to load all the resources). I was planning to move it to a dedicated virtual server (Ubuntu 12.04 LTS), which should theoretically improve things and make them more consistent given its not shared. However I observed severe performance degredation, with the page taking 10seconds to be generated. I ruled out network issues by editing /etc/hosts on the server and mapping the domain to 127.0.0.1. I used the Apache load tester ab to get the HTML, so JS, CSS and images are all excluded. It still took 10 seconds. I have Zpanel installed on the server which also uses MySQL, and its pages come up quite fast (1.5s) and also phpMyAdmin. Performing some queries on the wordpress database directly through phpMyAdmin returns them quite fast too, with query times in the 10 to 30 millisecond region. Memory is also sufficient, with only 800Mb being used of the 1Gb physical memory available, so it doesn't seem to be a swap issue either. I have also installed APC to try to improve the PHP performance, but it didn't have any effect. What else should I look for? What could be causing this degradation in performance? Could it be some kind of I/O issue since I am running on a cloud based virtual server? I wish to be able to raise the issue with my provider but without showing actual data from some diagnosis I am afraid he will just blame my application. UPDATE with sar output (every second) when I did an HTTP request: 02:31:29 CPU %user %nice %system %iowait %steal %idle 02:31:30 all 0.00 0.00 0.00 0.00 0.00 100.00 02:31:31 all 2.22 0.00 2.22 0.00 0.00 95.56 02:31:32 all 41.67 0.00 6.25 0.00 2.08 50.00 02:31:33 all 86.36 0.00 13.64 0.00 0.00 0.00 02:31:34 all 75.00 0.00 25.00 0.00 0.00 0.00 02:31:35 all 93.18 0.00 6.82 0.00 0.00 0.00 02:31:36 all 90.70 0.00 9.30 0.00 0.00 0.00 02:31:37 all 71.05 0.00 0.00 0.00 0.00 28.95 02:31:38 all 14.89 0.00 10.64 0.00 2.13 72.34 02:31:39 all 2.56 0.00 0.00 0.00 0.00 97.44 02:31:40 all 0.00 0.00 0.00 0.00 0.00 100.00 02:31:41 all 0.00 0.00 0.00 0.00 0.00 100.00 My suspicion that this comes from I/O related issue is also because a caching plugin I use to reduce the amount of queries to the database, by precompiling PHP pages is actually making things worse instead of better. It seems that file access is making things worse instead.

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• Ubuntu server 10.04 doesn't boot into installed Gnome desktop automatically

  - by Tong Wang

  I've installed Ubuntu server 10.04 and then installed Gnome desktop on top of it, because I am new to Linux and its command line, I need the GUI desktop to help me get around. However, the problem I got is that the server doesn't boot into the GUI desktop when powered on. It's booting into a shell like this: Gave up waiting for root device. Common problems: - Boot args (cat /proc/cmdline) - Check rootdelay= (did the system wait long enought?) - check root= (did the system wait for the right device?) - Missing modules (cat /proc/modules; ls /dev) ALERT! /dev/mapper/cecdata-root does not exist. Dropping to a shell! BusyBox v1.13.3 (Ubuntu 1:1.13.3-1ubuntu11) built-in shell (ash) Enter 'help' for a list of built-in commands. (initramfs) result of (cat /proc/cmdline) BOOT_IMAGE=/vmlinuz-2.6.32-28-server root=/dev/mapper/cecdata-root ro quiet Then I have type "exit" to exit the shell and then it boots into Gnome. Any idea what's wrong? Edit: add output for the following commands wt@cecdata:~$ ls /dev/mapper/ cecdata-root cecdata-swap_1 control wt@cecdata:~$ fdisk -l wt@cecdata:~$ wt@cecdata:~$ cat /etc/fstab # /etc/fstab: static file system information. # # Use 'blkid -o value -s UUID' to print the universally unique identifier # for a device; this may be used with UUID= as a more robust way to name # devices that works even if disks are added and removed. See fstab(5). # # <file system> <mount point> <type> <options> <dump> <pass> proc /proc proc nodev,noexec,nosuid 0 0 /dev/mapper/cecdata-root / ext4 errors=remount-ro 0 1 # /boot was on /dev/sda1 during installation UUID=1635be41-d025-405e-b4a3-6f0abedb7aab /boot ext2 defaults 0 2 /dev/mapper/cecdata-swap_1 none swap sw 0 0 wt@cecdata:~$ Adding output for lsmod wt@cecdata:~$ lsmod Module Size Used by fbcon 39270 71 tileblit 2487 1 fbcon font 8053 1 fbcon bitblit 5811 1 fbcon softcursor 1565 1 bitblit dell_wmi 2177 0 dcdbas 6918 0 vga16fb 12757 1 vgastate 9857 1 vga16fb psmouse 64576 0 serio_raw 4950 0 power_meter 9473 0 bnx2 72874 0 lp 9336 0 parport 37160 1 lp mptsas 50592 2 usbhid 41116 0 mptscsih 37167 1 mptsas hid 83568 1 usbhid mptbase 91674 2 mptsas,mptscsih scsi_transport_sas 33021 1 mptsas

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• Excessive CPU Utilization for Bind 9.8.1 `named` processes

  - by justinzane

  I just noticed that named is eating vast amounts of CPU time for a very small network with only a few domains. Can someone help me determine what is misconfigured, please? Or how to debug this. top top - 14:13:08 up 25 days, 14:16, 1 user, load average: 1.04, 1.04, 1.05 Tasks: 149 total, 1 running, 148 sleeping, 0 stopped, 0 zombie %Cpu(s): 17.3 us, 4.3 sy, 0.0 ni, 78.2 id, 0.1 wa, 0.0 hi, 0.0 si, 0.0 st KiB Mem: 2042776 total, 1347916 used, 694860 free, 249396 buffers KiB Swap: 3976080 total, 30552 used, 3945528 free, 574164 cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 17445 bind 20 0 244m 42m 3124 S 99.4 2.2 2345:03 named rndc stats +++ Statistics Dump +++ (1352931389) ++ Incoming Requests ++ 65869 QUERY ++ Incoming Queries ++ 31809 A 241 NS 3 CNAME 27455 SOA 276 PTR 123 MX 462 TXT 5400 AAAA 7 A6 1 DS 14 DNSKEY 15 SPF 55 AXFR 8 ANY ++ Outgoing Queries ++ [View: internal] 22206 A 509 NS 10 SOA 25 PTR 12 MX 524 TXT 4851 AAAA 62 DNSKEY 19 SPF 3157 DLV [View: external] 87 A 2 NS 80 AAAA 120 DNSKEY 7 DLV [View: _bind] ++ Name Server Statistics ++ 65869 IPv4 requests received 27670 requests with EDNS(0) received 112 TCP requests received 65652 responses sent 20 truncated responses sent 27670 responses with EDNS(0) sent 62920 queries resulted in successful answer 37117 queries resulted in authoritative answer 28482 queries resulted in non authoritative answer 7 queries resulted in referral answer 591 queries resulted in nxrrset 53 queries resulted in SERVFAIL 2081 queries resulted in NXDOMAIN 14530 queries caused recursion 162 duplicate queries received 55 requested transfers completed ++ Zone Maintenance Statistics ++ 109536 IPv4 notifies sent ++ Resolver Statistics ++ [Common] [View: internal] 29362 IPv4 queries sent 2013 IPv6 queries sent 28531 IPv4 responses received 4209 NXDOMAIN received 6 SERVFAIL received 31 FORMERR received 32 EDNS(0) query failures 3359 query retries 836 query timeouts 5348 IPv4 NS address fetches 3271 IPv6 NS address fetches 83 IPv4 NS address fetch failed 2779 IPv6 NS address fetch failed 17421 DNSSEC validation attempted 12731 DNSSEC validation succeeded 4690 DNSSEC NX validation succeeded 21104 queries with RTT 10-100ms 7418 queries with RTT 100-500ms 3 queries with RTT 500-800ms 1 queries with RTT 800-1600ms [View: external] 192 IPv4 queries sent 104 IPv6 queries sent 192 IPv4 responses received 2 NXDOMAIN received 104 query retries 44 IPv4 NS address fetches 44 IPv6 NS address fetches 1 IPv4 NS address fetch failed 1 IPv6 NS address fetch failed 4 DNSSEC validation attempted 3 DNSSEC validation succeeded 1 DNSSEC NX validation succeeded 152 queries with RTT 10-100ms 40 queries with RTT 100-500ms [View: _bind] ++ Cache DB RRsets ++ [View: internal (Cache: internal)] 2007 A 652 NS 131 CNAME 1 MX 32 TXT 421 AAAA 28 DS 244 RRSIG 110 NSEC 3 DNSKEY 2 !A 2 !TXT 89 !AAAA 2 !SPF 14 !DLV 148 NXDOMAIN [View: external (Cache: external)] 55 A 12 NS 34 AAAA 2 DS 10 RRSIG 1 DNSKEY [View: _bind (Cache: _bind)] ++ Socket I/O Statistics ++ 82958 UDP/IPv4 sockets opened 2118 UDP/IPv6 sockets opened 4 TCP/IPv4 sockets opened 1 TCP/IPv6 sockets opened 82956 UDP/IPv4 sockets closed 2117 UDP/IPv6 sockets closed 58 TCP/IPv4 sockets closed 15 UDP/IPv4 socket bind failures 2117 UDP/IPv6 socket connect failures 29554 UDP/IPv4 connections established 59 TCP/IPv4 connections accepted 2117 UDP/IPv6 send errors 5 UDP/IPv4 recv errors ++ Per Zone Query Statistics ++ --- Statistics Dump --- (1352931389)

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• Slow Memcached: Average 10ms memcached `get`

  - by Chris W.

  We're using Newrelic to measure our Python/Django application performance. Newrelic is reporting that across our system "Memcached" is taking an average of 12ms to respond to commands. Drilling down into the top dozen or so web views (by # of requests) I can see that some Memcache get take up to 30ms; I can't find a single use of Memcache get that returns in less than 10ms. More details on the system architecture: Currently we have four application servers each of which has a memcached member. All four memcached members participate in a memcache cluster. We're running on a cloud hosting provider and all traffic is running across the "internal" network (via "internal" IPs) When I ping from one application server to another the responses are in ~0.5ms Isn't 10ms a slow response time for Memcached? As far as I understand if you think "Memcache is too slow" then "you're doing it wrong". So am I doing it wrong? Here's the output of the memcache-top command: memcache-top v0.7 (default port: 11211, color: on, refresh: 3 seconds) INSTANCE USAGE HIT % CONN TIME EVICT/s GETS/s SETS/s READ/s WRITE/s cache1:11211 37.1% 62.7% 10 5.3ms 0.0 73 9 3958 84.6K cache2:11211 42.4% 60.8% 11 4.4ms 0.0 46 12 3848 62.2K cache3:11211 37.5% 66.5% 12 4.2ms 0.0 75 17 6056 170.4K AVERAGE: 39.0% 63.3% 11 4.6ms 0.0 64 13 4620 105.7K TOTAL: 0.1GB/ 0.4GB 33 13.9ms 0.0 193 38 13.5K 317.2K (ctrl-c to quit.) ** Here is the output of the top command on one machine: ** (Roughly the same on all cluster machines. As you can see there is very low CPU utilization, because these machines only run memcache.) top - 21:48:56 up 1 day, 4:56, 1 user, load average: 0.01, 0.06, 0.05 Tasks: 70 total, 1 running, 69 sleeping, 0 stopped, 0 zombie Cpu(s): 0.0%us, 0.0%sy, 0.0%ni, 99.7%id, 0.0%wa, 0.0%hi, 0.0%si, 0.3%st Mem: 501392k total, 424940k used, 76452k free, 66416k buffers Swap: 499996k total, 13064k used, 486932k free, 181168k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 6519 nobody 20 0 384m 74m 880 S 1.0 15.3 18:22.97 memcached 3 root 20 0 0 0 0 S 0.3 0.0 0:38.03 ksoftirqd/0 1 root 20 0 24332 1552 776 S 0.0 0.3 0:00.56 init 2 root 20 0 0 0 0 S 0.0 0.0 0:00.00 kthreadd 4 root 20 0 0 0 0 S 0.0 0.0 0:00.00 kworker/0:0 5 root 20 0 0 0 0 S 0.0 0.0 0:00.02 kworker/u:0 6 root RT 0 0 0 0 S 0.0 0.0 0:00.00 migration/0 7 root RT 0 0 0 0 S 0.0 0.0 0:00.62 watchdog/0 8 root 0 -20 0 0 0 S 0.0 0.0 0:00.00 cpuset 9 root 0 -20 0 0 0 S 0.0 0.0 0:00.00 khelper ...output truncated...

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