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• template files evaluation in python

  - by saminny

  I am trying to use python for translating a set of templates to a set of configuration files based on values taken from a main configuration file. However, I am having certain issues. Consider the following example of a template file. file1.cfg.template %(CLIENT1)s %(HOST1)s %(PORT1)d C %(COMPID1)s %(CLIENT2)s %(HOST2)s %(PORT2)d C %(COMPID2)s This file contains an entry for each client. There are hundreds of config files like this and I don't want to have logic for each type of config file. Python should do the replacements and generate config files automatically given a set of global values read from a main xml config file. However, in the above example, if CLIENT2 does not exist, how do I delete that line? I expect Python would generate the config file using something like this: os.open("file1.cfg.template").read() % myhash where myhash is hash of configuration parameters from the main config file which may not contain CLIENT2 at all. In the case it does not contain CLIENT2, I want that line to disappear from the file. Is it possible to insert some 'IF' block in the file and have python evaluate it? Thanks for your help. Any suggestions most welcome.

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• How can I send GET data to multiple URLs at the same time using cURL?

  - by Rob

  My apologies, I've actually asked this question multiple times, but never quite understood the answers. Here is my current code: while($resultSet = mysql_fetch_array($SQL)){ $ch = curl_init($resultSet['url'] . $fullcurl); //load the urls and send GET data curl_setopt($ch, CURLOPT_TIMEOUT, 2); //Only load it for two seconds (Long enough to send the data) curl_exec($ch); //Execute the cURL curl_close($ch); //Close it off } //end while loop What I'm doing here, is taking URLs from a MySQL Database ($resultSet['url']), appending some extra variables to it, just some GET data ($fullcurl), and simply requesting the pages. This starts the script running on those pages, and that's all that this script needs to do, is start those scripts. It doesn't need to return any output. Just the load the page long enough for the script to start. However, currently it's loading each URL (currently 11) one at a time. I need to load all of them simultaneously. I understand I need to use curl_multi_*, but I haven't the slightest idea on how cURL functions work, so I don't know how to change my code to use curl_multi_* in a while loop. So my questions are: How can I change this code to load all of the URLs simultaneously? Please explain it and not just give me code. I want to know what each individual function does exactly. Will curl_multi_exec even work in a while loop, since the while loop is just sending each row one at a time? And of course, any references, guides, tutorials about cURL functions would be nice, as well. Preferably not so much from php.net, as while it does a good job of giving me the syntax, its just a little dry and not so good with the explanations.

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• need help optimizing oracle query

  - by deming

  I need help in optimizing the following query. It is taking a long time to finish. It takes almost 213 seconds . because of some constraints, I can not add an index and have to live with existing ones. INSERT INTO temp_table_1 ( USER_ID, role_id, participant_code, status_id ) WITH A AS (SELECT USER_ID user_id,ROLE_ID, STATUS_ID,participant_code FROM USER_ROLE WHERE participant_code IS NOT NULL), --1 B AS (SELECT ROLE_ID FROM CMP_ROLE WHERE GROUP_ID = 3), C AS (SELECT USER_ID FROM USER) --2 SELECT USER_ID,ROLE_ID,PARTICIPANT_CODE,MAX(STATUS_ID) FROM A INNER JOIN B USING (ROLE_ID) INNER JOIN C USING (USER_ID) GROUP BY USER_ID,role_id,participant_code ; --1 = query when ran alone takes 100+ seconds --2 = query when ran alone takes 19 seconds DELETE temp_table_1 WHERE ROWID NOT IN ( SELECT a.ROWID FROM temp_table_1 a, USER_ROLE b WHERE a.status_id = b.status_id AND ( b.ACTIVE IN ( 1 ) OR ( b.ACTIVE IN ( 0,3 ) AND SYSDATE BETWEEN b.effective_from_date AND b.effective_to_date )) ); It seems like the person who wrote the query is trying to get everything into a temp table first and then deleting records from the temp table. whatever is left is the actual results. Can't it be done such a way that there is no need for the delete? We just get the results needed since that will save time?

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• The Current State Of Serving a PHP 5.x App on the Apache, LightTPD & Nginx Web Servers?

  - by Gregory Kornblum

  Being stuck in a MS stack architecture/development position for the last year and a half has prevented me from staying on top of the world of open source stack based web servers recent evolution more than I would have liked to. However I am now building an open source stack based application/system architecture and sadly I do not have the time to give each of the above mentioned web servers a thorough test of my own to decide. So I figured I'd get input from the best development community site and more specifically the people who make it so. This is a site that is a resource for information regarding a specific domain and target audience with features to help users not only find the information but to also interact with one another in various ways for various reasons. I chose the open source stack for the wealth of resources it has along with much better offers than the MS stack (i.e. WordPress vs BlogEngine.NET). I feel Java is more in the middle of these stacks in this regard although I am not ruling out the possibility of using it in certain areas unrelated to the actual web app itself such as background processes. I have already come to the conclusion of using PHP (using CodeIgniter framework & APC), MySQL (InnoDB) and Memcached on CentOS. I am definitely serving static content on Nginx. However the 3 servers mentioned have no consensus on which is best for dynamic content in regards to performance. It seems LightTPD still has the leak issue which rules it out if it does, Nginx seems it is still not mature enough for this aspect and of course Apache tries to be everything for everybody. I am still going to compile the one chosen with as many performance tweaks as possible such as static linking and the likes. I believe I can get Apache to match the other 2 in regards to serving dynamic content through this process and not having it serve anything static. However during my research it seems the others are still worth considering. So with all things considered I would love to hear what everyone here has to say on the matter. Thanks!

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• jquery with php loading file

  - by Marcus Solv

  I'm trying to use jquery with a simple php code: $('#some').click(function() { <?php require_once('some1.php?name="some' + index + '"'); ?> }); It shows no error, so I don't know what is wrong. In some1 I have: <?php //Start session session_start(); //Include database connection details require_once('../sql/config.php'); //Connect to mysql server $link = mysql_connect(DB_HOST, DB_USER, DB_PASSWORD); if(!$link) { die('Failed to connect to server: ' . mysql_error()); } //Select database $db = mysql_select_db(DB_DATABASE); if(!$db) { die("Unable to select database"); } //Function to sanitize values received from the form. Prevents SQL injection function clean($str) { $str = @trim($str); if(get_magic_quotes_gpc()) { $str = stripslashes($str); } return mysql_real_escape_string($str); } //Sanitize the POST values $name = clean($_GET['name']); ?> It's not complete because I want to make a sql command (insert). I want when I click in #some to execute that file (create a entry in the table that isn't define yet).

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• Do I need to write a trigger for such a simple constraint?

  - by Paul Hanbury

  I really had a hard time knowing what words to put into the title of my question, as I am not especially sure if there is a database pattern related to my problem. I will try to simplify matters as much as possible to get directly to the heart of the issue. Suppose I have some tables. The first one is a list of widget types: create table widget_types ( widget_type_id number(7,0) primary key, description varchar2(50) ); The next one contains icons: create table icons ( icon_id number(7,0) primary key, picture blob ); Even though the users get to select their preferred widget, there is a predefined subset of widgets that they can choose from for each widget type. create table icon_associations ( widget_type_id number(7,0) references widget_types, icon_id number(7,0) references icons, primary key (widget_type_id, icon_id) ); create table icon_prefs ( user_id number(7,0) references users, widget_type_id number(7,0), icon_id number(7,0), primary key (user_id, widget_type_id), foreign key (widget_type_id, icon_id) references icon_associations ); Pretty simple so far. Let us now assume that if we are displaying an icon to a user who has not set up his preferences, we choose one of the appropriate images associated with the current widget. I'd like to specify the preferred icon to display in such a case, and here's where I run into my problem: alter table icon_associations add ( is_preferred char(1) check( is_preferred in ('y','n') ) ) ; I do not see how I can enforce that for each widget_type there is one, and only one, row having is_preferred set to 'y'. I know that in MySQL, I am able to write a subquery in my check constraint to quickly resolve this issue. This is not possible with Oracle. Is my mistake that this column has no business being in the icon_associations table? If not where should it go? Is this a case where, in Oracle, the constraint can only be handled with a trigger? I ask only because I'd like to go the constraint route if at all possible. Thanks so much for your help, Paul

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• protect form hijacking hack

  - by Karem

  Yes hello today I discovered a hack for my site. When you write a msg on a users wall (in my communitysite) it runs a ajax call, to insert the msg to the db and will then on success slide down and show it. Works fine with no problem. So I was rethinking alittle, I am using POST methods for this and if it was GET method you could easily do ?msg=haxmsg&usr=12345679. But what could you do to come around the POST method? I made a new html document, made a form and on action i set "site.com/insertwall.php" (the file that normally are being used in ajax), i made some input fields with names exactly like i am doing with the ajaxcall (msg, uID (userid), BuID (by userid) ) and made a submit button. I know I have a page_protect() function on which requires you to login and if you arent you will be header to index.php. So i logged in (started session on my site.com) and then I pressed on this submit button. And then wops I saw on my site that it has made a new message. I was like wow, was it so easy to hijack POST method i thought maybe it was little more secure or something. I would like to know what could I do to prevent this hijacking? As i wouldnt even want to know what real hackers could do with this "hole". The page_protect secures that the sessions are from the same http user agent and so, and this works fine (tried to run the form without logging in, and it just headers me to startpage) but yea wouldnt take long time to figure out to log in first and then run it. Any advices are appreciated alot. I would like to keep my ajax calls most secure as possible and all of them are running on the POST method. What could I do to the insertwall.php, to check that it comes from the server or something.. Thank you

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• [C++][OpenMP] Proper use of "atomic directive" to lock STL container

  - by conradlee

  I have a large number of sets of integers, which I have, in turn, put into a vector of pointers. I need to be able to update these sets of integers in parallel without causing a race condition. More specifically. I am using OpenMP's "parallel for" construct. For dealing with shared resources, OpenMP offers a handy "atomic directive," which allows one to avoid a race condition on a specific piece of memory without using locks. It would be convenient if I could use the "atomic directive" to prevent simultaneous updating to my integer sets, however, I'm not sure whether this is possible. Basically, I want to know whether the following code could lead to a race condition vector< set<int>* > membershipDirectory(numSets, new set<int>); #pragma omp for schedule(guided,expandChunksize) for(int i=0; i<100; i++) { set<int>* sp = membershipDirectory[5]; #pragma omp atomic sp->insert(45); } (Apologies for any syntax errors in the code---I hope you get the point) I have seen a similar example of this for incrementing an integer, but I'm not sure whether it works when working with a pointer to a container as in my case.

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• Android Camera intent creating two files

  - by Kyle Ramstad

  I am making a program that takes a picture and then shows it's thumbnail. When using the emulator all goes well and the discard button deletes the photo. But on a real device the camera intent saves the image at the imageUri variable and a second one that is named like if I had just opened up the camera and took a picture by itself. private static final int CAMERA_PIC_REQUEST = 1337; /** Called when the activity is first created. */ @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.camera); //start camera values = new ContentValues(); values.put(MediaStore.Images.Media.TITLE, "New Picture"); values.put(MediaStore.Images.Media.DESCRIPTION,"From your Camera"); imageUri = getContentResolver().insert(MediaStore.Images.Media.EXTERNAL_CONTENT_URI, values); image = (ImageView) findViewById(R.id.ImageView01); Intent intent = new Intent(MediaStore.ACTION_IMAGE_CAPTURE); intent.putExtra(MediaStore.EXTRA_OUTPUT, imageUri); startActivityForResult(intent, CAMERA_PIC_REQUEST); //save the image buttons Button save = (Button) findViewById(R.id.Button01); Button close = (Button) findViewById(R.id.Button02); } @Override protected void onActivityResult(int requestCode, int resultCode, Intent data) { if (requestCode == CAMERA_PIC_REQUEST && resultCode == RESULT_OK) { try{ thumbnail = MediaStore.Images.Media.getBitmap(getContentResolver(), imageUri); image.setImageBitmap(thumbnail); } catch(Exception e){ e.printStackTrace(); } } else{ finish(); } } public void myClickHandler(View view) { switch (view.getId()) { case R.id.Button01: finish(); break; case R.id.Button02: dicard(); } } private void dicard(){ getContentResolver().delete(imageUri, null, null); finish(); }

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• What's the best Linux backup solution?

  - by Jon Bright

  We have a four Linux boxes (all running Debian or Ubuntu) on our office network. None of these boxes are especially critical and they're all using RAID. To date, I've therefore been doing backups of the boxes by having a cron job upload tarballs containing the contents of /etc, MySQL dumps and other such changing, non-packaged data to a box at our geographically separate hosting centre. I've realised, however that the tarballs are sufficient to rebuild from, but it's certainly not a painless process to do so (I recently tried this out as part of a hardware upgrade of one of the boxes) long-term, the process isn't sustainable. Each of the boxes is currently producing a tarball of a couple of hundred MB each day, 99% of which is the same as the previous day partly due to the size issue, the backup process requires more manual intervention than I want (to find whatever 5GB file is inflating the size of the tarball and kill it) again due to the size issue, I'm leaving stuff out which it would be nice to include - the contents of users' home directories, for example. There's almost nothing of value there that isn't in source control (and these aren't our main dev boxes), but it would be nice to keep them anyway. there must be a better way So, my question is, how should I be doing this properly? The requirements are: needs to be an offsite backup (one of the main things I'm doing here is protecting against fire/whatever) should require as little manual intervention as possible (I'm lazy, and box-herding isn't my main job) should continue to scale with a couple more boxes, slightly more data, etc. preferably free/open source (cost isn't the issue, but especially for backups, openness seems like a good thing) an option to produce some kind of DVD/Blu-Ray/whatever backup from time to time wouldn't be bad My first thought was that this kind of incremental backup was what tar was created for - create a tar file once each month, add incrementally to it. rsync results to remote box. But others probably have better suggestions.

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• NMEA data received but empty. Is there any secret?

  - by Roland Bertolom

  I have a tablet "Futjitsu Stylistic Q550". It's running on Windows 7 (not Phone!). It has a built-in GPS-receiver "Sierra Wireless". I need to parse NMEA data from COM-port. I can do it but it's always empty! Like "$GPRMC,,V,,,,,,,,,,N*53". I've tried standing on open space a long time (so my Android device had located me via GPS for a long time) but NMEA data still empty. So I suppose that GPS is off. But I don't know how to figure it out. I've tried send to COM port $PARAM,START,0*61 but no changes. I've tried to insert SIM-card into the device, as it was suggested on one forum but result was the same. Well is it possible that GPS is idle or something or it's just not working? And if it is idle or off how can I enable it? And.. That looks strange but GSV enumerates satellites but everyone of them has still no data e.g.: $GPGSV,4,1,16,32,,,,11,,,,23,,,*78

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• NHibernate.MappingException on table insertion.

  - by Suja

  The table structure is : The controller action to insert a row to table is public bool CreateInstnParts(string data) { IDictionary myInstnParts = DeserializeData(data); try { HSInstructionPart objInstnPartBO = new HSInstructionPart(); using (ISession session = Document.OpenSession()) { using (ITransaction transaction = session.BeginTransaction()) { objInstnPartBO.DocumentId = Convert.ToInt32(myInstnParts["documentId"]); objInstnPartBO.InstructionId = Convert.ToInt32(myInstnParts["instructionId"]); objInstnPartBO.PartListId = Convert.ToInt32(myInstnParts["part"]); objInstnPartBO.PartQuantity = Convert.ToInt32(myInstnParts["quantity"]); objInstnPartBO.IncPick = Convert.ToBoolean(myInstnParts["incpick"]); objInstnPartBO.IsTracked = Convert.ToBoolean(myInstnParts["istracked"]); objInstnPartBO.UpdatedBy = User.Identity.Name; objInstnPartBO.UpdatedAt = DateTime.Now; session.Save(objInstnPartBO); transaction.Commit(); } return true; } } catch (Exception ex) { Console.Write(ex.Message); return false; } } This is throwing an exception NHibernate.MappingException was caught Message="No persister for: Hexsolve.Data.BusinessObjects.HSInstructionPart" Source="NHibernate" StackTrace: at NHibernate.Impl.SessionFactoryImpl.GetEntityPersister(String entityName) at NHibernate.Impl.SessionImpl.GetEntityPersister(String entityName, Object obj) at NHibernate.Event.Default.AbstractSaveEventListener.SaveWithGeneratedId(Object entity, String entityName, Object anything, IEventSource source, Boolean requiresImmediateIdAccess) at NHibernate.Event.Default.DefaultSaveOrUpdateEventListener.SaveWithGeneratedOrRequestedId(SaveOrUpdateEvent event) at NHibernate.Event.Default.DefaultSaveEventListener.SaveWithGeneratedOrRequestedId(SaveOrUpdateEvent event) at NHibernate.Event.Default.DefaultSaveOrUpdateEventListener.EntityIsTransient(SaveOrUpdateEvent event) at NHibernate.Event.Default.DefaultSaveEventListener.PerformSaveOrUpdate(SaveOrUpdateEvent event) at NHibernate.Event.Default.DefaultSaveOrUpdateEventListener.OnSaveOrUpdate(SaveOrUpdateEvent event) at NHibernate.Impl.SessionImpl.FireSave(SaveOrUpdateEvent event) at NHibernate.Impl.SessionImpl.Save(Object obj) at HexsolveMVC.Controllers.InstructionController.CreateInstnParts(String data) in F:\Project\HexsolveMVC\Controllers\InstructionController.cs:line 1342 InnerException: Can anyone help me solve this??

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• What's the SQL function for timestamp manipulation?

  - by Eric Leroy

  I'm new to SQL and the time functions are different than mySQL so I'm having a terrible time finding a good site reference with USEFUL timestamp queries. I'm not able to locate the correct way of doing this query in SQL: Id Timestamp ----------------------------------- 1145744 2012-10-10 18:15:11.500 1145743 2012-10-10 18:15:11.313 1145742 2012-10-10 18:15:11.313 1145741 2012-10-10 18:15:11.253 1145740 2012-10-10 18:15:11.190 1145739 2012-10-10 18:15:11.190 1145738 2012-10-10 18:15:11.127 1145737 2012-10-10 18:15:11.067 1145736 2012-10-10 18:15:11.063 1145735 2012-10-10 18:15:10.940 1145734 2012-10-10 18:15:10.817 SELECT * from table WHERE Timestamp ... RANGE I need the range of 2 timestamps so I can select rows by the following parameters: second range minute range hour range day range week range month range year range Is there one function to put in 2 timestamps and get the range? or is this a mix of functions I need? Any good site references would be greatly appriceated. MSDN site isn't helping me isolate the proper way of doing this. I've been searching for about an hour trying to get the last day from 1:30PM to 1:30PM today.

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• PHP GET issue - it aint workin!

  - by benhowdle89

  I have a simple PHP form which displays inputs with values from a mysql DB and send the form results to another page which updates a db table based on the GET results: echo "<form method='get' action='updateprojects.php'>"; echo "<table>"; echo "<tr>"; echo " <th>Project No</th> <th>Customer Name</th> <th>Description</th> </tr>"; while($row = mysql_fetch_array($result)) { echo "<tr>"; echo "<td><input value=" . $row['project_no'] . "></input></td>"; echo "<td><input value='" . $row['cust_name'] . "'></input></td>"; echo "<td><input value='" . $row['description'] . "'></input></td>"; echo "</tr>"; } echo "</table>"; echo "<input type='submit' value='Update' />"; echo "</form>"; on updateprojects.php i have set up the GET variable and even echoed them to check but nothing comes through! Cannot see why!? This is the start of updateprojects.php: echo $_GET['project_no'].$_GET['cust_name'].$_GET['description'];

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• How is timezone handled in the lifecycle of an ADO.NET + SQL Server DateTime column?

  - by stimpy77

  Using SQL Server 2008. This is a really junior question and I could really use some elaborate information, but the information on Google seems to dance around the topic quite a bit and it would be nice if there was some detailed elaboration on how this works... Let's say I have a datetime column and in ADO.NET I set it to DateTime.UtcNow. 1) Does SQL Server store DateTime.UtcNow accordingly, or does it offset it again based on the timezone of where the server is installed, and then return it offset-reversed when queried? I think I know that the answer is "of course it stores it without offsetting it again" but want to be certain. So then I query for it and cast it from, say, an IDataReader column to a DateTime. As far as I know, System.DateTime has metadata that internally tracks whether it is a UTC DateTime or it is an offsetted DateTime, which may or may not cause .ToLocalTime() and .ToUniversalTime() to have different behavior depending on this state. So, 2) Does this casted System.DateTime object already know that it is a UTC DateTime instance, or does it assume that it has been offset? Now let's say I don't use UtcNow, I use DateTime.Now, when performing an ADO.NET INSERT or UPDATE. 3) Does ADO.NET pass the offset to SQL Server and does SQL Server store DateTime.Now with the offset metadata? So then I query for it and cast it from, say, an IDataReader column to a DateTime. 4) Does this casted System.DateTime object already know that it is an offset time, or does it assume that it is UTC?

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• Listen to Response on HTML Form embedded in GWT View?

  - by confile

  I have a HTML like the following: <div> <form> <input type="text" /> <button class="sendForm" value="Send form" /> </form> </div> <script> // post the form with Jquery post // register a callback that handles the response </script> I use this type of form a lot with a JavaScript/JQuery overlay that displays the form. That could be handled for example with plugins like FancyBox. I also want to use this form embedded into a GWT view. Lets assume that the for cannot be created on client side because it has some server based markup language inside to set up some model data. If I want to use this form in GWT I have to do the following. Tell GWT the form request url and use a RequestBuilder to query the html content of this form. Then I can insert it into a div generated by GWT. So far so good. Problem: When the user hits the send button the response is handled my the JQuery callback that is inside the script under the form. Is there a way to access this callback from within GWT? Is there a way to overwrite the JQuery send action? Since, the code is HTML and comes from the server I cannot place ui-binder UiFields inside to get access to these DOM elements. I need to get the response if the submitted form accessible to GWT. Is there a way how I can achieve this with JSNI?

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• How do I rescue a small portion of data from a SQL Server database backup?

  - by Greg

  I have a live database that had some data deleted from it and I need that data back. I have a very recent copy of that database that has already been restored on another machine. Unrelated changes have been made to the live database since the backup, so I do not want to wipe out the live database with a full restore. The data I need is small - just a dozen rows - but those dozen rows each have a couple rows from other tables with foreign keys to it, and those couple rows have god knows how many rows with foreign keys pointing to them, so it would be complicated to restore by hand. Ideally I'd be able to tell the backup copy of the database to select the dozen rows I need, and the transitive closure of everything that they depend on, and everything that depends on them, and export just that data, which I can then import into the live database without touching anything else. What's the best approach to take here? Thanks. Everyone has mentioned sp_generate_inserts. When using this, how do you prevent Identity columns from messing everything up? Do you just turn IDENTITY INSERT on?

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• Ajax Request using jQuery in Rails

  - by Steve

  Hi... I am sending an Ajax Request using jQuery. What happens is that I am getting an "405 Method Not Allowed" Error. I am just posting a form, which would get the detail from the form and insert it into the DB. Just the usual stuff.I am using WEBrick that comes as default with the rails package. Can somebody please tell me how to fix this. This is the code that triggers the Ajax Request $.post($(this).attr("action") + ".js",$(this).serialize(),null,"script"); Response Headers Cache-Control no-cache Allow GET, PUT, DELETE Content-Type text/html; charset=utf-8 Content-Length 9502 Server WEBrick/1.3.1 (Ruby/1.9.1/2009-12-07) Date Wed, 02 Jun 2010 20:41:33 GMT Connection Keep-Alive Request Headers Host localhost:3000 User-Agent Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.6; en-US; rv:1.9.2.3) Gecko/20100401 Firefox/3.6.3 Accept application/json, text/javascript, */* Accept-Language en-us,en;q=0.5 Accept-Encoding gzip,deflate Accept-Charset ISO-8859-1,utf-8;q=0.7,*;q=0.7 Keep-Alive 115 Connection keep-alive Content-Type application/x-www-form-urlencoded; charset=UTF-8 X-Requested-With XMLHttpRequest Referer http://localhost:3000/viewspot/3 Content-Length 141 Pragma no-cache Cache-Control no-cache

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• Doubly Linked Lists Implementation

  - by user552127

  Hi All, I have looked at most threads here about Doubly linked lists but still unclear about the following. I am practicing the Goodrich and Tamassia book in Java. About doubly linked lists, please correct me if I am wrong, it is different from a singly linked list in that a node could be inserted anywhere, not just after the head or after the tail using both the next and prev nodes available, while in singly linked lists, this insertion anywhere in the list is not possible ? If one wants to insert a node in a doubly linked list, then the default argument should be either the node after the to-be inserted node or node before the to-be inserted node ? But if this is so, then I don't understand how to pass the node before or after. Should we be displaying all nodes that were inserted till now and ask the user to select the node before or after which some new node is to be inserted ? My doubt is how to pass this default node. Because I assume that will require the next and prev nodes of these nodes as well. For e.g, Head<-A<-B<-C<-D<-E<-tail If Z is the new node to be inserted after say D, then how should node D be passed ? I am confused with this though it seems pretty simple to most. But pl do explain. Thanks, Sanjay

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• Parse large XML file w/ script or use BioPython API ?

  - by jeremy04

  Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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• Load iframe in html, only with jquery

  - by phpExe

  In this jquery code: $(document).ready(function(){ $list = $(".channeList li"); $list.click(function(){ var $this = $(this); var $mainDesc = $(".ply"); var iframe = $("a", $this).attr("rel"); $("iframe", $mainDesc).attr("src", iframe); } ); } ); There is a list o channels in left that iframe loads from a rel's. I want to load first iframe in <div class="ply"></div> In html, I dont want insert the first item. Can we do this without load first item in html and do this only with jquery? The php function channel() { if (is_numeric($_GET['kanalID'])) { $kanalID = $_GET['kanalID']; } if ($_GET['kanalID'] == "") { $kanalID = 1;} $channel = '<ul class="channeList">'; foreach ($tv as $id => $kanal) { $class = $kanalID == $id ? $class = "currentt": ''; $channel .= '<li> <a href="#" rel="http://mysite.com/index.php?id='.$id.'&w=500&h=320" >'.$kanal.'</a></li>'; } $channel .= '</ul>'; $channel .= '<div class="ply"><iframe frameborder=0 width="500" height="320"></iframe></div>'; return $channel; } Thanks in advance

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• XMLHttpRequest POST Data Size

  - by usurper

  Hi, Is there a size limit to a XHR POST request? I am using the POST method for saving textdata into MySQL using PHP script and the data is cut off. Firebug sends me the following message: ... Firebug request size limit has been reached by Firebug. ... This is my code for sending the data: function makeXHR(recordData) { xmlhttp = createXHR(); var body = "q=" + encodeURIComponent(recordData); xmlhttp.open("POST", "insertRowData.php", true); xmlhttp.setRequestHeader("Content-Type", "application/x-www-form-urlencoded"); xmlhttp.setRequestHeader("Content-length", body.length); xmlhttp.setRequestHeader("Connection", "close"); xmlhttp.onreadystatechange = function() { if(xmlhttp.readyState == 4 && xmlhttp.status == 200) { //alert(xmlhttp.responseText); alert("Records were saved successfully!"); } } xmlhttp.send(body); } The only solution I can think of is splitting the data and making a queue of XHR requests but I don't like it. Is there another way?

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• inserting unique date into txt document

  - by durian

  I'm trying this script to insert only a unique date into a text file, but it isn't working properly: $log_file_name = "logfile.txt"; $log_file_path = "log_files/$id/$log_file_name"; if(file_exists($log_file_path)){ $not = "not"; $todaydate = date('d,m,Y'); $today = "$todaydate;"; $strlength = strlen($today); $file_contents = file_get_contents($log_file_path); $file_contents_arry = explode(";",$file_contents); if(!in_array($todaytodaydate,$file_contents_arry)){ $append = fopen($log_file_path, 'a'); $write = fwrite($append,$today); //writes our string to our file. $close = fclose($append); //closes our file } else { $append = fopen($log_file_path, 'a'); $write = fwrite($append,$not); //writes our string to our file. $close = fclose($append); //closes our file } } else{ mkdir("log_files/$id", 0700); $todaydate = date('d,m,Y'); $today = "$todaydate;"; $strlength = strlen($today); $create = fopen($log_file_path, "w"); $write = fwrite($create, $today, $strlength); //writes our string to our file. $close = fclose($create); //closes our file } The problem is with the if else statement where it should be written if it's already in the array.

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• JPA - Real primary key generated ID for references

  - by Val

  I have ~10 classes, each of them, have composite key, consist of 2-4 values. 1 of the classes is a main one (let's call it "Center") and related to other as one-to-one or one-to-many. Thinking about correct way of describing this in JPA I think I need to describe all the primary keys using @Embedded / @PrimaryKey annotations. Question #1: My concern is - does it mean that on the database level I will have # of additional columns in each table referring to the "Center" equal to number of column in "Center" PK? If yes, is it possible to avoid it by using some artificial unique key for references? Could you please give an idea how real PK and the artificial one needs to be described in this case? Note: The reason why I would like to keep the real PK and not just use the unique id as PK is - my application have some data loading functionality from external data sources and sometimes they may return records which I already have in local database. If unique ID will be used as PK - for new records I won't be able to do data update, since the unique ID will not be available for just downloaded ones. At the same time it is normal case scenario for application and it just need to update of insert new records depends on if the real composite primary key matches. Question #2: All of the 10 classes have common field "date" which I described in an abstract class which each of them extends. The "date" itself is never a key, but it always a part of composite key for each class. Composite key is different for each class. To be able to use this field as a part of PK should I describe it in each class or is there any way to use it as is? I experimented with @Embedded and @PrimaryKey annotations and always got an error that eclipselink can't find field described in an abstract class. Thank you in advance! PS. I'm using latest version of eclipselink & H2 database.

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• Performing a SVD on tweets. Memory problem

  - by plotti

  I have generated a huge csv file as an output from my pos tagging and stemming. It looks like this: word1, word2, word3, ..., word14400 person1 1 2 0 1 person2 0 0 1 0 ... person650 It contains the word counts for each person. Like this I am getting characteristic vectors for each person. I want to run a SVD on this beast, but it seems the matrix is too big to be held in memory to perform the operation. My quesion is: should i reduce the column size by removing words which have a column sum of for example 1, which means that they have been used only once. Do I bias the data too much with this attempt? I tried the rapidminer attempt, by loading the csv into the db. and then sequentially reading it in with batches for processing, like rapidminer proposes. But Mysql can't store that many columns in a table. If i transpose the data, and then retranspose it on import it also takes ages.... -- So in general I am asking for advice how to perform a svd on such a corpus.

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