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  • sed find pattern on line with another pattern

    - by user2962390
    I am trying to extract text from a file between a '<' and a '', but only on a line starting with another specific pattern. So in a file that looks like: XXX Something here XXX Something more here XXX <\Lines like this are a problem ZZZ something <\This is the text I need XXX Don't need any of this I would like to print only the "<\This is the text I need". If I do sed -n '/^ZZZ/p' FILENAME it pulls the correct lines I need to look at, but obviously prints the whole line. sed -n '/</,//p' FILENAME prints way too much. I have looked into grouping and tried sed -n '/^ZZZ/{/</,//} FILENAME but this doesn't seem to work at all. Any suggestions? They will be much appreciated. (Apologies for formatting, never posted on here before)

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  • finding empty directories unix

    - by soField
    i need to find empty directories for given list of directories some directories have directories inside it if inside directories also empty i can say main directory is empty otherwise it's not empty how can i test this for example A>A1(file1),A2 this is not empty beacuse of file1 B>B1(no file) this is empty C>C1,C2 this is empty thanks

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  • script to sum all numbers in a file (linux)

    - by Mark Roberts
    I have a file which contains several thousand numbers, each on it's own line: 34 42 11 6 2 99 ... I'm looking to write a script which will print the sum of all numbers in the file. I've got a solution, but it's not very efficient. (It takes several minutes to run.) I'm looking for a more efficient solution. Any suggestions?

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  • Uniq in awk; removing duplicate values in a column using awk

    - by D W
    I have a large datafile in the following format below: ENST00000371026 WDR78,WDR78,WDR78, WD repeat domain 78 isoform 1,WD repeat domain 78 isoform 1,WD repeat domain 78 isoform 2, ENST00000371023 WDR32 WD repeat domain 32 isoform 2 ENST00000400908 RERE,KIAA0458, atrophin-1 like protein isoform a,Homo sapiens mRNA for KIAA0458 protein, partial cds., The columns are tab separated. Multiple values within columns are comma separated. I would like to remove the duplicate values in the second column to result in something like this: ENST00000371026 WDR78 WD repeat domain 78 isoform 1,WD repeat domain 78 isoform 1,WD repeat domain 78 isoform 2, ENST00000371023 WDR32 WD repeat domain 32 isoform 2 ENST00000400908 RERE,KIAA0458 atrophin-1 like protein isoform a,Homo sapiens mRNA for KIAA0458 protein, partial cds., I tried the following code below but it doesn't seem to remove the duplicate values. awk ' BEGIN { FS="\t" } ; { split($2, valueArray,","); j=0; for (i in valueArray) { if (!( valueArray[i] in duplicateArray)) { duplicateArray[j] = valueArray[i]; j++; } }; printf $1 "\t"; for (j in duplicateArray) { if (duplicateArray[j]) { printf duplicateArray[j] ","; } } printf "\t"; print $3 }' knownGeneFromUCSC.txt How can I remove the duplicates in column 2 correctly?

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  • Import files directly to SVN repo without checking out first

    - by Werner
    Hi, I am using SVN and have a repository on a remote machine. Sometimes, when working on my local machine I realize that I need to add some new files to the repo. The usual procedure I know would then be: 1- at the current folder on my local machine checkout the whole SVN repo 2- enter there 3- copy the interesting file here 4- commit But this can be a bit tedious. I wonder if somehow, I can omit steps 1 to 3 and import the "interesting" file to SVN directly without necessity of checking out the repo first. Thanks

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  • Sed. How change line next to specific pattern

    - by kirill
    My file is: DIVIDER Sometext_string many lines of random text DIVIDER Another_Sometext_string many many lines DIVIDER Third_sometext_string .... How change lines following DIVIDER pattern Result must be: DIVIDER [begin]Sometext_string[end] many lines of random text DIVIDER [begin]Another_Sometext_string[end] many many lines DIVIDER [begin]Third_sometext_string[end] ....

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  • How to remove all words written in capital letters ONLY (by using sed and/or awk)

    - by Virtual_Lotos
    I am trying to delete all words written in capital letters only by using sed: sed -r "s/\b[A-Z]\w*\s*//g" < file1 > file2 But this solution capture all the words starting with capital letters and delete them (this in not the goal). Here's an example: file1 content: AAAAAAAAAAAA BBbbbbb AbAbAbAb aaaaaBBBBB AAAAAA BBBBBB A1-B1 a1-b1 A1-b1 AA AAAAA BBBBB AAAAA Abbbb AAA AAAAA AAAABB Abbbb Baaaa Aaaaa AB AAAAAA1 BBBBBBb AAAAAA 1 BBBBBB b Result should be like this (file2 content): BBbbbbb AbAbAbAb aaaaaBBBBB A1-B1 a1-b1 A1-b1 AA Abbbb AAA Abbbb Baaaa Aaaaa AB AAAAAA1 BBBBBBb AAAAAA 1 BBBBBB b Each line of at least one digit or one lowercase letter should remain intact (should not be deleted).

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  • Listing the content of a tar file or a directory only down to some level

    - by Tim
    I wonder how to list the content of a tar file only down to some level? I understand tar tvf mytar.tar will list all files, but sometimes I would like to only see directories down to some level. Similarly, for the command ls, how do I control the level of subdirectories that will be displayed? By default, it will only show the direct subdirectories, but not go further.

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  • Get file name before the extension

    - by ryanprayogo
    I have some files in the same directory (in UNIX filesystem) that looks like: a.txt.name b.xml.name c.properties.name a.txt.name2 b.xml.name2 c.properties.name2 How do I get the string before the name or name2 part using some shell command? ie. the a.txt, b.xml, c.properties part?

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  • symlink files newer than X age, then later remove symlink once file ages?

    - by bleomycin
    Hello everyone, i have a large number of files/folders coming in each day that are being sorted automatically to a wide variety of folders. I'm looking for a way to automatically find these files/folders and create symlinks to them all within an "incoming" folder. Searching for file age should be sufficient for finding the files, however searching for age and owner would be ideal. Then once the files/folders being linked to reach a certain age, say 5 days, remove the symlinks to them automatically from the "incoming" folder. Is this possible to do with a simple shell or python script that can be run with cron? Thanks!

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  • Parsing result of Diff in Shell Script

    - by Saobi
    I want to compare two files and see if they are the same or not in my shell script, my way is: diff_output=`diff ${dest_file} ${source_file}` if [ some_other_condition -o ${diff_output} -o some_other_condition2 ] then .... fi Basically, if they are the same ${diff_output} should contain nothing and the above test would evaluate to true. But when I run my script, it says [: too many arguments On the if [....] line. Any ideas?

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  • How do I conditionally redirect the output of a command to /dev/null?

    - by Lawrence Johnston
    I have a script. I would like to give this script a quiet mode and a verbose mode. This is the equivalent of: if $verbose then redirect="> /dev/null" fi echo "Verbose mode enabled" $redirect # This doesn't work because the redirect isn't evaluated. I'd really like a better way of doing this than writing if-elses for every statement affected. eval could work, but has obvious side effects on other variables.

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  • Linux: programatically setting a permanent environment variable

    - by Richard
    Hello All, I am writing a little install script for some software. All it does is unpack a target tar, and then i want to permanently set some environment variables - principally the location of the unpacked libs and updating $PATH. Do I need to programmatically edit the .bashrc file, adding the appropriate entries to the end for example, or is there another way? What's standard practice? Thanks

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  • How to write a program that mimics Fiddler by using tcpdump or from scratch?

    - by ????
    When Fiddler is not on Mac OS X or Ubuntu, and if we don't install/use Wireshark or any other more heavy duty tools, what is a way to use tcpdump so that 1) It can print out GET /foo/bar HTTP/1.1 [request content in RAW text] [response content in RAW text] POST /foo/... HTTP/1.1 this should be able to be done by tcpdump or by using tcpdump in a short shell script or Ruby / Python / Perl script. 2) Actually, it can be neat if a script can output HTML, with GET /foo/bar HTTP/1.1 POST /foo/... HTTP/1.1 on the page, for any browser to display, and then when clicked on any of those lines, it will expand to show the RAW content like (1) above does. Click again and it will hide the details. The expansion UI can be done using jQuery or any JS library. The script may be short... possibly less than 20 lines? Does anybody know how to do it either for (1) or (2)?

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  • Change -- to . for all files in a directory

    - by Larry
    Hello, I need to rename all the files in a directory. Some examples of the source filenames are: alpha--sometext.381928 comp--moretext.7294058 The resultant files would be renamed as: alpha.sometext.381928 comp.moretext.7294058 The number of characters before and after the -- is not consistant. The script needs to work on current installations of Ubuntu and FreeBSD. These are lean LAMP servers so only the necessary packages have been installed. Thanks

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  • find: What's up with basename and dirname?

    - by temp2290
    I'm using find for a task and I noticed that when I do something like this: find `pwd` -name "file.ext" -exec echo $(dirname {}) \; it will give you dots only for each match. When you s/dirname/basename in that command you get the full pathnames. Am I screwing something up here or is this expected behavior? I'm used to basename giving you the name of the file (in this case "file.ext") and dirname giving you the rest of the path.

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  • Save JSON outputed from a URL to a file

    - by Aidan
    Hey Guys, How would I save JSON outputed by an URL to a file? e.g from the Twitter search API (this http://search.twitter.com/search.json?q=hi) Language isn't important. Thanks! edit // How would I then append further updates to EOF?

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  • Create variables for unknown amount of arguments?

    - by user347600
    Working on an rsync script and the portion below is in a for loop. What I want to achieve is assign a variable to every arguement after 3. Just confused if I need to create another loop for that or not: #1: name name=$1 #2: ip ip=$2 #3: user user=$3 #4+: folder exlusion #any lines higher than 3 will be created as exlcude folders ex[ARG_NUMBER]=

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  • Using placeholders/variables in a sed command

    - by jesse_galley
    I want to store a specific part of a matched result as a variable to be used for replacement later. I would like to keep this in a one liner instead of finding the variable I need before hand. when configuring apache, and use mod_rewrite, you can specificy specific parts of patterns to be used as variables,like this: RewriteRule ^www.example.com/page/(.*)$ http://www.example.com/page.php?page=$1 [R=301,L] the part of the pattern match that's contained inside the parenthesis is stored as $1 for use later. So if the url was www.example.com/page/home, it would be replaced with www.example.com/page.php?page=home. So the "home" part of the match was saved in $1 because it was the part of the pattern inside the parenthesis. I want something like this functionality with a sed command, I need to automatically replace many strings in a SQL dump file, to add drop table if exist commands before each create table, but I need to know the table name to do this, so if the dump file contains something like: ... CREATE TABLE `orders` ... I need to run something like: cat dump.sql | sed "s/CREATE TABLE `(.*)`/DROP TABLE IF EXISTS $1\N CREATE TABLE `$1`/g" to get the result of: ... DROP TABLE IF EXISTS `orders` CREATE TABLE `orders` ... I'm using the mod_rewrite syntax in the sed command as a logical example of what I'm trying to do. Any suggestions?

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  • List content of tar file or a directory only down to some level

    - by Tim
    I wonder how to list content of tar file only down to some level? I understand "tar tvf mytar.tar" will list all files, but sometimes I wish I can just see directories down to some level. Similarly for command "ls" how to control the level of subdirectories that will be displayed? By default, it will only show the direct subdirectories, but not further. Thanks and regards

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  • What is common between environments within a shell terminal session?

    - by Matt1776
    I have a custom shell script that runs each time a user logs in or identity is assumed, its been placed in /etc/profile.d and performs some basic env variable operations. Recently I added some code so that if screen is running it will reattach it without needing me to type anything. There are some problems however. If I log-in as root, and su - to another user, the code runs a second time. Is there a variable I can set when the code runs the first time that will prevent a second run of the code? I thought to write something to the disk but then I dont want to prevent the code from running if I begin a new terminal session. Here is the code in question. It first attempts to reattach - if unsuccessful because its already attached (as it might be on an interruped session) it will 'take' the session back. screen -r if [ -z "$STY" ]; then exec screen -dR fi Ultimately this bug prevents me from substituting user to another user because as soon as I do so, it grabs the screen session and puts me right back where I started. Pretty frustrating

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  • Splitting string into array upon token

    - by Gnutt
    I'm writing a script to perform an offsite rsync backup, and whenever the rsyncline recieves some output it goes into a single variable. I then want to split that variable into an array upon the ^M token, so that I can send them to two different logger-sessions (so I get them on seperate lines in the log). My current line to perform the rsync result=rsync --del -az -e "ssh -i $cert" $source $destination 2>&1 Result in the log, when the server is unavailable ssh: connect to host offsite port 22: Connection timed out^M rsync: connection unexpectedly closed (0 bytes received so far) [sender] rsync error: unexplained error (code 255) at io.c(601) [sender=3.0.7]

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