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  • Can I accesss an external file when testing an R package?

    - by Abe
    I am using the testthat package to test an R package that is within a larger repository. I would like to test the contents of a file outside of the R package. Can I reference a file that is located outside of an R package while testing? What I have tried A reproducible example can be downloaded as MyRepo.tar.gz My repository is called "myRepo", and it includes an R package, "myRpkg" and a folder full of miscellaneous scripts ~/MyRepo/ ~/MyRepo/MyRpkg ~/MyRepo/Scripts The tests in "MyRpkg" are in the /tests/ folder ~/myRepo/myRpkg/tests/test.myscript.R And I want to be able to test a file in the Scripts folder: ~/MyRepo/Scripts/myscript.sh I would like to read the script to test the contents of the first line doing something like this: check.script <- readLines("../../../Scripts/myscript.sh")[1] expect_true(grepl("echo", check.script)) This works fine if I start from the MyRepo directory: cd ~/MyRepo R CMD check MyRpkg But if I move to another directory, it fails: cd R CMD check MyRepo/MyRpkg

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  • Import files directly to SVN repo without checking out first

    - by Werner
    Hi, I am using SVN and have a repository on a remote machine. Sometimes, when working on my local machine I realize that I need to add some new files to the repo. The usual procedure I know would then be: 1- at the current folder on my local machine checkout the whole SVN repo 2- enter there 3- copy the interesting file here 4- commit But this can be a bit tedious. I wonder if somehow, I can omit steps 1 to 3 and import the "interesting" file to SVN directly without necessity of checking out the repo first. Thanks

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  • Linux: programatically setting a permanent environment variable

    - by Richard
    Hello All, I am writing a little install script for some software. All it does is unpack a target tar, and then i want to permanently set some environment variables - principally the location of the unpacked libs and updating $PATH. Do I need to programmatically edit the .bashrc file, adding the appropriate entries to the end for example, or is there another way? What's standard practice? Thanks

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  • how to run few vim commands in a raw

    - by temujin.ya.ru
    Hello. This is really noob question. There is set of vim commands : command1 : command2 etc., which I would neet to type in in a raw quite often. How to I make it automatic? It is simple regexp replace command set, however I cannot script those in sed, since it involves non-latin locales and for some reason vim handles non-latin regexps correctly, while sed not.

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  • Find -type d with no subfolders

    - by titatom
    Good morning ! This is a simple one I believe, but I am still a noob :) I am trying to find all folders with a certain name. I am able to do this with the command find /path/to/look/in/ -type d | grep .texturedata The output gives me lots of folders like this : /path/to/look/in/.texturedata/v037/animBMP But I would like it to stop at .texturedata : /path/to/look/in/.texturedata/ I have hundreds of these paths and would like to lock them down by piping the output of grep into chmod 000 I was given a command with the argument -dpe once, but I have no idea what it does and the Internet has not be able to help me determine it's usage Thanks you very much for your help !

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  • Splitting string into array upon token

    - by Gnutt
    I'm writing a script to perform an offsite rsync backup, and whenever the rsyncline recieves some output it goes into a single variable. I then want to split that variable into an array upon the ^M token, so that I can send them to two different logger-sessions (so I get them on seperate lines in the log). My current line to perform the rsync result=rsync --del -az -e "ssh -i $cert" $source $destination 2>&1 Result in the log, when the server is unavailable ssh: connect to host offsite port 22: Connection timed out^M rsync: connection unexpectedly closed (0 bytes received so far) [sender] rsync error: unexplained error (code 255) at io.c(601) [sender=3.0.7]

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  • List content of tar file or a directory only down to some level

    - by Tim
    I wonder how to list content of tar file only down to some level? I understand "tar tvf mytar.tar" will list all files, but sometimes I wish I can just see directories down to some level. Similarly for command "ls" how to control the level of subdirectories that will be displayed? By default, it will only show the direct subdirectories, but not further. Thanks and regards

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  • Create variables for unknown amount of arguments?

    - by user347600
    Working on an rsync script and the portion below is in a for loop. What I want to achieve is assign a variable to every arguement after 3. Just confused if I need to create another loop for that or not: #1: name name=$1 #2: ip ip=$2 #3: user user=$3 #4+: folder exlusion #any lines higher than 3 will be created as exlcude folders ex[ARG_NUMBER]=

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  • Shell script syntax error: unexpected end of line

    - by user1557674
    I wrote a simple shell script to check for the existence of a xml file and if it exists, then rename an old xml file to be backup and then move the new xml file to where the old xml file was stored. #!/bin/sh oldFile="/Documents/sampleFolder/sampleFile.xml" newFile="/Documents/sampleFile.xml" backupFileName="/Documents/sampleFolder/sampleFile2.backup" oldFileLocation="/Documents/sampleFolder" if [ -f "$newFile" ] ; then echo "File found" #Rename old file mv $oldFile $backupFileName #move new file to old file's location mv $newFile $oldFileLocation else echo "File not found, do nothing" fi However, every time I try to run the script, I get 4 command not found messages and a syntax error: unexpected end of file. Any suggestions on why I get these command not found errors or the unexpected end of file? I double checked that I closed all my double quotes, I have code highlight :) EDIT: output from running script: : command not found: : command not found: : command not found1: : command not found6: replaceXML.sh: line 26: syntax error: unexpected end of file

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  • Listing the content of a tar file or a directory only down to some level

    - by Tim
    I wonder how to list the content of a tar file only down to some level? I understand tar tvf mytar.tar will list all files, but sometimes I would like to only see directories down to some level. Similarly, for the command ls, how do I control the level of subdirectories that will be displayed? By default, it will only show the direct subdirectories, but not go further.

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  • Detecting when a process has finished (but not exited)

    - by Egwor
    I have a program that's run in unix (that I have no control over) that when finished prints 'Completed successfully' but does not exit. I want to automatically detect when the process finishes (by checking the output of the command), so that I can kill the process and so that I can proceed do other activities. The complexity comes because I want to be able to run multiples of these scripts concurrently. (One activity I need to do requires the script to be called with various inputs, but each time the script runs it takes a while to return, and so I want to do them in parallel) Has anyone done something similar to this? I could redirect the stderr and stdout output of the command to a temporary file which has a random file name, then tail the file and pipe to grep for the end conditions (I.e. the certain log lines). The problem is, surely tail -f would keep running, and so it would never exit. Should I poll? If so, what's the best approach?

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  • What is the most robust way of determining the current codepage from a shell script?

    - by rewbs
    Hi all, I'd like to determine the environment's current codepage at runtime from a Unix shell script. What's the most reliable way of doing this? I'm looking into parsing environment variable $LC_ALL, but it isn't always set to a useful value, and its format seems to vary (can be <locale, or <locale.<code page, or <locale.<code page@<modifier etc...). Is there a better way? I'm essentially after a shell equivalent of what I'd get if I called nl_langinfo(CODESET) from C.

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  • Problem with cyrillic symbols in console

    - by woto
    Hi everyone, sorry for bad English. It's Ruby code. s = "???????" `touch #{s}` `cat #{s}` `cat < #{s}` Can anybody tell why it's code fails? With sh: cannot open ???????: No such file But thic code works fine s = "????????" `touch #{s}` `cat #{s}` `cat < #{s}` Problem is only when Russian symbol '?' in the word and with symobol '<' woto@woto-work:/tmp$ locale LANG=ru_RU.UTF-8 LC_CTYPE="ru_RU.UTF-8" LC_NUMERIC="ru_RU.UTF-8" LC_TIME="ru_RU.UTF-8" LC_COLLATE="ru_RU.UTF-8" LC_MONETARY="ru_RU.UTF-8" LC_MESSAGES="ru_RU.UTF-8" LC_PAPER="ru_RU.UTF-8" LC_NAME="ru_RU.UTF-8" LC_ADDRESS="ru_RU.UTF-8" LC_TELEPHONE="ru_RU.UTF-8" LC_MEASUREMENT="ru_RU.UTF-8" LC_IDENTIFICATION="ru_RU.UTF-8" LC_ALL= woto@woto-work:/tmp$ ruby -v ruby 1.8.7 (2010-01-10 patchlevel 249) [x86_64-linux] woto@woto-work:/tmp$ uname -a Linux woto-work 2.6.32-26-generic #48-Ubuntu SMP Wed Nov 24 10:14:11 UTC 2010 x86_64 GNU/Linux woto@woto-work:/tmp$ lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 10.04.1 LTS Release: 10.04 Codename: lucid

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  • find: missing argument to -exec

    - by Abs
    Hello all, I was helped out today with a command, but it doesn't seem to be working. This is the command: find /home/me/download/ -type f -name "*.rm" -exec ffmpeg -i {} -sameq {}.mp3 && rm {}\; The shell returns find: missing argument to `-exec' What I am basically trying to do is go through a directory recursively (if it has other directories) and run the ffmpeg command on the .rm file types and convert them to .mp3 file types. Once this is done, remove the .rm file that has just been converted. I appreciate any help on this.

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  • Curl: How to insert value to a cookie?

    - by Crazy_Bash
    Ho to insert cookies value in curl? from firebug "request headers" i can see in the following "Cookie: PHPSESSID=gg792c2ktu6sch6n8q0udd94o0; was=1; uncheck2=1; uncheck3=1; uncheck4=1; uncheck5=0; hd=1; uncheck1=1" I have tried the following: curl http://site.com/ -s -L -b cookie.c -c cookie.c -d "was=1; uncheck2=1; uncheck3=1; uncheck4=1; uncheck5=0; hd=1; uncheck1=1" > comic and the only thing i see in cookie.c is PHPSESSID=gg792c2ktu6sch6n8q0udd94o0; was=1;

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  • Get file name before the extension

    - by ryanprayogo
    I have some files in the same directory (in UNIX filesystem) that looks like: a.txt.name b.xml.name c.properties.name a.txt.name2 b.xml.name2 c.properties.name2 How do I get the string before the name or name2 part using some shell command? ie. the a.txt, b.xml, c.properties part?

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  • Change -- to . for all files in a directory

    - by Larry
    Hello, I need to rename all the files in a directory. Some examples of the source filenames are: alpha--sometext.381928 comp--moretext.7294058 The resultant files would be renamed as: alpha.sometext.381928 comp.moretext.7294058 The number of characters before and after the -- is not consistant. The script needs to work on current installations of Ubuntu and FreeBSD. These are lean LAMP servers so only the necessary packages have been installed. Thanks

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  • Linux: Find all symlinks of a given 'original' file? (reverse 'readlink')

    - by sdaau
    Hi all, Consider the following command line snippet: $ cd /tmp/ $ mkdir dirA $ mkdir dirB $ echo "the contents of the 'original' file" > orig.file $ ls -la orig.file -rw-r--r-- 1 $USER $USER 36 2010-12-26 00:57 orig.file # create symlinks in dirA and dirB that point to /tmp/orig.file: $ ln -s $(pwd)/orig.file $(pwd)/dirA/ $ ln -s $(pwd)/orig.file $(pwd)/dirB/lorig.file $ ls -la dirA/ dirB/ dirA/: total 44 drwxr-xr-x 2 $USER $USER 4096 2010-12-26 00:57 . drwxrwxrwt 20 root root 36864 2010-12-26 00:57 .. lrwxrwxrwx 1 $USER $USER 14 2010-12-26 00:57 orig.file -> /tmp/orig.file dirB/: total 44 drwxr-xr-x 2 $USER $USER 4096 2010-12-26 00:58 . drwxrwxrwt 20 root root 36864 2010-12-26 00:57 .. lrwxrwxrwx 1 $USER $USER 14 2010-12-26 00:58 lorig.file -> /tmp/orig.file At this point, I can use readling to see what is the 'original' (well, I guess the usual term here is either 'target' or 'source', but those in my mind can be opposite concepts as well, so I'll just call it 'original') file of the symlinks, i.e. $ readlink -f dirA/orig.file /tmp/orig.file $ readlink -f dirB/lorig.file /tmp/orig.file ... However, what I'd like to know is - is there a command I could run on the 'original' file, and find all the symlinks that point to it? In other words, something like (pseudo): $ getsymlinks /tmp/orig.file /tmp/dirA/orig.file /tmp/dirB/lorig.file Thanks in advance for any comments, Cheers!

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  • How to run command in the background and notify me via email when done

    - by Abs
    Hello all, I have the following command which will take ages to run (couple of hours). I would like to make it a background process and for it to send me an email when its done. For the cherry on the top, any errors it encountered should write to a text file when an error has occurred? find . -type f -name "*.rm" -exec ./rm2mp3.sh \{} \; -exec rm \{} \; How can I do this with my above command?

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  • replace new lines with comas in shell

    - by mpapis
    I want to replace new lines in text with coma or space but do not change the last new line. I know of this question: How to replace new lines with tab characters - but it does produce an tab on end instead of new line. So far I have come with: awk 'NR>1{printf","} {printf $1} END{printf"\n"}' Is there an easier way to do this? This is not an assignment, I am just curious want to level up my scripting.

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  • php/ssh2 script does not display the stdout to $stream

    - by kamal
    The following php script works for simple linux commands, like ps -ef , but when i use ./dstat -t -a , it seems to hang and i dont get the prompt back on my local machine. Kep in mind that all commands are executed over ssh on a remote host: <?php $target = time() . '_' . 'txt'; if($ssh = ssh2_connect('10.1.0.174', 22)) { if(ssh2_auth_password($ssh, 'root', 'kmoon77')) { //$stream = ssh2_exec($ssh, 'whoami'); $sCommand = 'dstat -a'; //$sCommand = 'ps -ef'; $stream = ssh2_exec($ssh, $sCommand); //$stream = ssh2_exec($ssh, 'pwd'); stream_set_blocking($stream, true); $data = ''; while($buffer = fread($stream, 4096)) { $data .= $buffer; } //fclose($stream); echo $data; // user } } ?>

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  • How to perform an action when a remote (Http) file changed?

    - by ZeissS
    Hi, I want to create a script that checks an URL and perform an action (download + unzip) when the "Last-Modified" header of the remote file changed. I thought about fetching the header with curl but then I have to store it somewhere for each file and perform a date comparison. Does anyone have a different idea using (mostly) standard unix tools? thanks

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  • Improved technique to store a filename in a variable?

    - by SDGuero
    Greetings, I need to store the filename of a log into a variable so my script can perform some checks on the daily log files. These logs always have a different name because they have a timestamp in the name. Currently I'm using a hodge podged method that pipes an ls command to sed, sort, cut, and tail in order to get the name out. CRON_LOG=$(ls -1 $LOGS_DIR/fetch_cron_{true,false}_$CRON_DATE*.log 2> /dev/null | sed 's/^[^0-9][^0-9]*\([0-9][0-9]*\).*/\1 &/' | sort -n | cut -d ' ' -f2- | tail -1 ) UPDATE: $CRON_DATE is supplied as an argument to the script. It is the date (to the day) that the log was created on. Sometimes multiple logs will exist for the same day so I want this to get the most recent one. A typical filename is fetch_cron_false_031810090452.log I'm pretty sure I kluged this together from some stuff I found google a few months ago. it works now but I'm not really happy with the technique. I have some ideas about how to do this better but I have had great success on this site before and thought it might be best to refer to the stackoverflow gods first. All answers are greatly appreciated. Thanks, Ryan

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