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• Virtual dedicated server repetitive draining RAM, OOM constantly

  - by Deerly

  My linux (fedora red hat 7) virtual dedicated server has been experiencing OOM multiple times a day for the past several days. I thought the issue was with spamd/spamassassin but after disabling this the errors remains. The highest usage displayed on ps faux --cumulative: USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND root 28412 8.7 0.5 309572 109308 ? Sl 22:15 0:17 /usr/java/jdk1. mysql 7716 0.0 0.0 136256 18000 ? Sl 22:12 0:00 _ /usr/libexe named 17697 0.0 0.0 120904 15316 ? Ssl 22:09 0:00 /usr/sbin/named I'm not running any java applications so I'm not sure why the top issue is showing up. It is frustrating as I barely have anything running on the server and use the tiniest fraction of bandwidth. Any help or suggestions on zeroing in on the source of the drain would be much appreciated! Thanks!

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• Testing installation package in OpenSolaris

  - by Alex Farber

  Testing my "configure - make - make install" installation package on OpenSolaris, I found that all required files are placed to expected locations. usr/local/bin contains myprogram file. If I type in command line: /usr/local/bin/myprogram, it is working. However, typing "myprogram" without path does not work. Is /usr/local/bin directory included in OpenSolaris executable path? If not, why autoconfig tools place my executable to this directory? Installation package is created in Ubuntu.

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• can't start MySql in Mac OS 10.6 Snow Leopard

  - by nacho4d

  I've googled this and could'nt find anything new and useful for Apple's new OS SnowLeopard. I wonder if this is my mistake or I do need to do something? this is what I did: Downloaded from mysql site: http://dev.mysql.com/downloads/mysql/5.1.html#macosx-dmg I choose : Mac OS X 10.5 (x86_64) I run all the packages and installed all of them. So now I certainly have mysql in /usr/local/mysql/ But when trying to start it from preferences panel, it is always STOPPED. When I try to do (in the terminal): /usr/local/mysql/bin/mysql I got : -bash: /usr/local/mysql/bin/mysql: Bad CPU type in executable What is wrong here? Any help would be very appreciated. Thanks

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• MySql UDF using shared library won't load

  - by Jarrod

  I am attempting to create a mysql UDF which will match a fingerprint using Digital Persona's free linux SDK library. I have written a trivial UDF as a learning experience which worked fine. However, when I added a dependency to Digital Persona's shared object I can no longer get MySql to load my UDF. I added includes to DP's headers and compiled my UDF using: gcc -fPIC -Wall -I/usr/src/mysql-5.0.45-linux-i686-icc-glibc23/include -shared -o dp_udf.so dp_udf.cc I also tried adding the -static argument, but whenever I restart MySql, I get the error: Can't open shared library 'dp_udf.so' (errno: 0 /usr/local/mysql/lib/plugin/dp_udf.so: undefined symbol: MC_verifyFeaturesEx) MC_verifyFeaturesEx is a function defined "dpMatch.h" which I included, and is implemented in libdpfpapi.so which I have tried placing in the same location as my dp_udf.so and in /usr/lib. Am I doing something wrong with my call to gcc (my C++ skills are rusty) or does MySql not allow UDFs to use additional shared objects?

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• Error running celeryd

  - by Eric Palakovich Carr

  I'm posting this question (and answer) so if anybody else has this problem in the future, you'll be able to google it. If you are trying to run celeryd in Django like so: python manage.py celeryd You can receive the following error immediately after it has started: celery@eric-desktop-dev has started. Traceback (most recent call last): File "manage.py", line 11, in <module> execute_manager(settings) <... snip ...> File "/usr/local/lib/python2.6/dist-packages/amqplib-0.6.1-py2.6.egg/amqplib/client_0_8/connection.py", line 134, in __init__ self._x_start_ok(d, login_method, login_response, locale) File "/usr/local/lib/python2.6/dist-packages/amqplib-0.6.1-py2.6.egg/amqplib/client_0_8/connection.py", line 704, in _x_start_ok args.write_longstr(response) File "/usr/local/lib/python2.6/dist-packages/amqplib-0.6.1-py2.6.egg/amqplib/client_0_8/serialization.py", line 352, in write_longstr self.write_long(len(s)) TypeError: object of type 'NoneType' has no len() A rather cryptic error message, with no real clue as to where to go to fix the problem. See below for the answer so you don't waste a bunch of time on this error like I did today :)

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• Error when using --static option with macrubyc

  - by Jakub Hampl

  I want to create a binary executable for a relatively simple script that would not require people to install macruby or HotCocoa. The script is here. I've understood that I want to use the --static option for the compiler and I'm using the following command: macrubyc -o postprocessor --static postprocessor.rb I get the following error: ld: library not found for -lLLVMBitWriter collect2: ld returned 1 exit status Error when executing `/usr/bin/g++ -o "postprocessor" -arch x86_64 -L/Library/Frameworks/MacRuby.framework/Versions/0.6/usr/lib -lmacruby-static -L/usr/local/lib -lpthread -lffi -lm -lLLVMBitWriter -lLLVMX86CodeGen -lLLVMX86Info -lLLVMSelectionDAG -lLLVMAsmPrinter -lLLVMJIT -lLLVMExecutionEngine -lLLVMCodeGen -lLLVMScalarOpts -lLLVMTransformUtils -lLLVMipa -lLLVMAnalysis -lLLVMTarget -lLLVMMC -lLLVMCore -lLLVMSupport -lLLVMSystem -lpthread -ldl -lxml2 -lobjc -lauto -licucore -framework Foundation "/var/folders/wU/wUGgoG1JGeKBgwalWLPMAU+++TI/-Tmp-/main-72203.o" "./postprocessor.o"' What should I do to get this running?

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• data directory in automake

  - by Alex Farber

  I have some data files that should be distributed with my program. Using dist_pkgdata_DATA in Makefile.am, I get these files installed to /usr/local/data/share/package-name. The problem is that data is read-only, and my program needs to modify it. Playing with dist_sharedstate_DATA, dist_localstate_DATA, dist-data_DATA varibles, I got different installation directories, like /usr/local/com, usr/local/var, but data is always read-only. How can I distribute modifiable data files with my package? I need some common directory for all users, or maybe local data in a user directory.

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• Handle mysql restart in SQLAlchemy

  - by wRAR

  My Pylons app uses local MySQL server via SQLAlchemy and python-MySQLdb. When the server is restarted, open pooled connections are apparently closed, but the application doesn't know about this and apparently when it tries to use such connection it receives "MySQL server has gone away": File '/usr/lib/pymodules/python2.6/sqlalchemy/engine/default.py', line 277 in do_execute cursor.execute(statement, parameters) File '/usr/lib/pymodules/python2.6/MySQLdb/cursors.py', line 166 in execute self.errorhandler(self, exc, value) File '/usr/lib/pymodules/python2.6/MySQLdb/connections.py', line 35 in defaulterrorhandler raise errorclass, errorvalue OperationalError: (OperationalError) (2006, 'MySQL server has gone away') This exception is not caught anywhere so it bubbles up to the user. If I should handle this exception somewhere in my code, please show the place for such code in a Pylons WSGI app. Or maybe there is a solution in SA itself?

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• Redirect PHP-Shell-Script output

  - by Corelgott

  Hi Folks, i have got a php-script foo.php #!/usr/bin/php -c /etc/php5/cli/php.ini -q <?php echo 'hello'; // & do some stuff ?> I call this script not wrapped by a sh-script but using it directly in a cron job. To get rid of it's output i normally would just create a sh-file which calls /usr/bin/php -c /etc/php5/cli/php.ini -q foo.php > /dev/null 2 > /dev/null now i'd like to do this in the interpreter-declaration of the php file it self... so i am looking for the syntax for: #!/usr/bin/php -args [file's content] > /redirect 2 > /redirect i have kind of a hard time googleing for it... so if anybody could point me into the right direction i would really appreciate it! Thx in advance Corelgott

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• Rails "rake test" crashing

  - by Homer J. Simpson

  Hi, this might be rather unspecific, but I'm trying to do 'rake test' on a new rails app, and end up with (in /Users/myname/dev/railstest/RailsApplication1) /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby -I"lib:test" "/Library/Ruby/Gems/1.8/gems/rake-0.8.7/lib/rake/rake_test_loader.rb" /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby -I"lib:test" "/Library/Ruby/Gems/1.8/gems/rake-0.8.7/lib/rake/rake_test_loader.rb" /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby -I"lib:test" "/Library/Ruby/Gems/1.8/gems/rake-0.8.7/lib/rake/rake_test_loader.rb" No other output. System is Leopard 10.5, Rails 2.3.5, Ruby 1.86 Any ideas ?

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• yiic shell: failed to perform 'crud'

  - by ufw

  Debian Squeeze, PHP 5.3.2-1, Yii 1.1.2, PHP $path to php is /usr/bin/php, permissions are '777'. When I try to run 'crud Test' in yii shell, I get the following error message: PHP Warning: include(/var/www/test/protected/models/Test.php): failed to open stream: No such file or directory in /var/www/yii/framework/YiiBase.php on line 335 PHP Warning: include(): Failed opening '/var/www/test/protected/models/Test.php' for inclusion (include_path='.:/var/www/test/protected/components:/var/www/test/protected/models:/usr/share/php:/usr/share/pear') in /var/www/yii/framework/YiiBase.php on line 335 PHP Fatal error: Class 'Test' not found in /var/www/yii/framework/db/ar/CActiveRecord.php on line 341

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• openssl error wehn compiling Ruby from source

  - by Florian Salihovic

  Prelude: I don't want to use rvm. I installed ruby 2 with the following configuration on Mac OS X 10.8.5 ./configure --prefix=/usr/local \ --enable-pthread \ --with-readline-dir=/usr/local \ --enable-shared It is installed, version is printed correctly ... Now, when invoking gem install jekyll I get the following error: ERROR: Loading command: install (LoadError) cannot load such file -- openssl ERROR: While executing gem ... (NoMethodError) undefined method `invoke_with_build_args' for nil:NilClass I installed openssl into /usr/local but i'm really banging my head against the wall on how installing gems. It can't be that big of a deal right?

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• DEADLOCK_WRAP error when using Berkeley Db in python (bsddb)

  - by JiminyCricket

  I am using a berkdb to store a huge list of key-value pairs but for some reason when i try to access some of the data later i get this error: try: key = 'scrape011201-590652' contenttext = contentdict[key] except: print the error <type 'exceptions.KeyError'> 'scrape011201-590652' in contenttext = contentdict[key]\n', ' File "/usr/lib64/python2.5/bsddb/__init__.py", line 223, in __getitem__\n return _DeadlockWrap(lambda: self.db[key]) # self.db[key]\n', 'File "/usr/lib64/python2.5/bsddb/dbutils.py", line 62, in DeadlockWrap\n return function(*_args, **_kwargs)\n', ' File "/usr/lib64/python2.5/bsddb/__init__.py", line 223, in <lambda>\n return _DeadlockWrap(lambda: self.db[key]) # self.db[key]\n'] I am not sure what DeadlockWrap is but there isnt any other program or process accessing the berkdb or writing to it (as far as i know,) so not sure how we could get a deadlock, if its referring to that. Is it possible that I am trying to access the data to rapidly? I have this function call in a loop, so something like for i in hugelist: #try to get a value from the berkdb #do something with it I am running this with multiple datasets and this error only occurs with one of them, the largest one, not the others.

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• Twisted chainDeferred not working as expected

  - by Martin Gergov

  I have a problem figuring out a somewhat simple twisted python code. From what I have red in the docs, the code here should work without Unhandled Error. I get this: HELLO! HANDLED! HANDLED 2! Unhandled error in Deferred: Unhandled Error Traceback (most recent call last): File "package_tester.py", line 31, in <module> a().callback(2) File "/usr/local/lib/python2.7/dist-packages/twisted/internet/defer.py", line 368, in callback self._startRunCallbacks(result) File "/usr/local/lib/python2.7/dist-packages/twisted/internet/defer.py", line 464, in _startRunCallbacks self._runCallbacks() --- <exception caught here> --- File "/usr/local/lib/python2.7/dist-packages/twisted/internet/defer.py", line 551, in _runCallbacks current.result = callback(current.result, *args, **kw) File "package_tester.py", line 5, in c raise Exception() exceptions.Exception: Isn't the failure from the chained deferred passed to end() errback ?

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• Error: Cannot parse function definition from ' hello()' in Mytest.xs, line 9

  - by Nikole

  Hi I am trying to use perl XS in RHEL 5. but simple programm is giving error.I followed same code as in Example 1 in perldoc perlxstut Can anyone help me in correcting the following error? [root@localhost Mytest]# [root@localhost Mytest]# pwd /home/nikole/perlcode/Mytest [root@localhost Mytest]# ls blib lib MANIFEST Mytest.xs pm_to_blib README Changes Makefile.PL Mytest.c Mytest.xsc ppport.h t [root@localhost Mytest]# perl Makefile.PL Checking if your kit is complete... Looks good Writing Makefile for Mytest [root@localhost Mytest]# [root@localhost Mytest]# [root@localhost Mytest]# make /usr/bin/perl /usr/lib/perl5/5.8.8/ExtUtils/xsubpp -typemap /usr/lib/perl5/5.8.8/ExtUtils/typemap Mytest.xs Mytest.xsc && mv Mytest.xsc Mytest.c Error: Cannot parse function definition from ' hello()' in Mytest.xs, line 9 Please specify prototyping behavior for Mytest.xs (see perlxs manual) make: *** [Mytest.c] Error 1 [root@localhost Mytest]# Thanks

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• Set environment variable in Ubuntu

  - by Junho Park

  In Ubuntu, I'd like to switch my JAVA_HOME environment variable back and forth between Java 5 and 6. I open a terminal and type in the following to set the JAVA_HOME environment variable: export JAVA_HOME=/usr/lib/jvm/java-1.5.0-sun And in that same terminal window, I type the following to check that the environment variable has been updated: echo $JAVA_HOME And I see /usr/lib/jvm/java-1.5.0-sun which is what I'm expecting to see. In addition, I modify ~/.profile and set the JAVA_HOME environment variable to /usr/lib/jvm/java-1.5.0-sun. And now for the problem--when I open a new terminal window and I check my JAVA_HOME environment variable by typing in echo $JAVA_HOME I see that my JAVA_HOME environment variable has been reverted back to Java 6. When I reboot my machine (or log out and back in, I suppose) the JAVA_HOME environment variable is set to Java 5 (presumably because of the modification I made in my ~/.profile). Is there a way around this so that I can change my JAVA_HOME environment without having to log out and back in (AND make that environment variable change stick in all new terminal windows)?

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• Object of class mysqli_result could not be converted to string

  - by Joann

  I asked Google to help me I got no luck. :-( Here's the particular code that generates the error: $this->conn->query("UPDATE tz_members SET confirm='yes' WHERE usr='".$uname."'"); The whole function is the following: function update_confirm_field($code) { $uname = $this->conn->query("SELECT usr FROM tz_members WHERE confirm='".$code."'"); $this->conn->query("UPDATE tz_members SET confirm='yes' WHERE usr='".$uname."'"); } Forgive me if I have missed something stupid. Can anyone tell me what's causing the problem please???

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• How do I shorten the repository URL using svn+ssh similar to svnserve -r?

  - by Marcus

  In the svnbook, it shows you how to shorten the URL to your repositories when using svnserve as a daemon, using -r like: svnserve -d -r /usr/local/repositories That way, you can refer to the repository you need right after the hostname in the URL without revealing any of the local path (which is /usr/local/repositories/project1): svn checkout svn://host.example.com/project1 However, now that I am switching to svn+ssh, I have the local path back in my repository URL: svn checkout svn+ssh://host.example.com/usr/local/repositories/project1 Does anyone know how to hide that local path and use a shorter URL as up above, using svn+ssh and WITHOUT using a UNIX soft link on the svn server? (you still end up with an extra string in the URL if you use a soft link...) UPDATE: The solution to this can be found in the accepted answer over on ServerFault (the green-checked answer). Yay!

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• Having trouble with post-commit hook

  - by John Isaacks

  I am following this tutorial that is like the hello world for post-commit I am using unbuntu 10.04. I installed svnnotify and ran $ which svnnotify which output: /usr/bin/svnnotify so I changed the path in the turorial from /usr/local/bin/svnnotify to /usr/bin/svnnotify I also tried changing the line: #!/bin/sh to #!/bin/bash since bash is the login shell in ubuntu 10.04. I tried to run it the way the tutorial originally had it, with my changes, and combinations of the two. Everytime the commit is successful but I get Warning: post-commit hook failed (exit code 1) with no output. The original way had output not found I am very new to linux and shell scripting and have exhausted everything I can think of. What am I doing wrong?

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• Python script shows different pythonpath

  - by Bird Jaguar IV

  Attempting to run runsnake gives ImportError: No module named wx Opening an ipython or python session seems to work fine: >>> import wx >>> import sys >>> print [p for p in sys.path if 'wx' in p] ['/usr/local/lib/wxPython-2.9.4.0/lib/python2.7/site-packages', '/usr/local/lib/wxPython-2.9.4.0/lib/python2.7/site-packages/wx-2.9.4-osx_cocoa', '/usr/local/lib/wxPython-2.9.4.0/lib/python2.7/site-packages/wx-2.9.1-osx_cocoa/tools'] as does putting that code in a script and calling python script.py. But putting that code at the beginning of runsnake.py prints an empty list (printing the whole sys.path prints a path quite different from my $PYTHONPATH). Why would it be different, and how to I get it to recognize wxPython?

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• C++'s std::string pools, debug builds? std::string and valgrind problems

  - by Den.Jekk

  Hello, I have a problem with many valgrind warnings about possible memory leaks in std::string, like this one: 120 bytes in 4 blocks are possibly lost in loss record 4,192 of 4,687 at 0x4A06819: operator new(unsigned long) (vg_replace_malloc.c:230) by 0x383B89B8B0: std::string::_Rep::_S_create(unsigned long, unsigned long, std::allocator<char> const&) (in /usr/lib64/libstdc++.so.6.0.8) by 0x383B89C3B4: (within /usr/lib64/libstdc++.so.6.0.8) by 0x383B89C4A9: std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, unsigned long, std::allocator<char> const&) (in /usr/lib64/libstdc++.so.6.0.8) I'm wondering: does std::string (GCC 4.1.2) use any memory pools? if so, is there any way to disable the pools (in form of a debug build etc.)? Regards, Den

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• LLVM Clang 5.0 explicit in copy-initialization error

  - by kevzettler

  I'm trying to compile an open source project on OSX that has only been tested on Linux. $: g++ -v Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-da I'm trying to compile with the following command line options g++ -MMD -Wall -std=c++0x -stdlib=libc++ -Wno-sign-compare -Wno-unused-variable -ftemplate-depth=1024 -I /usr/local/Cellar/boost/1.55.0/include/boost/ -g -O3 -c level.cpp -o obj-opt/level.o I am seeing several errors that look like this: ./square.h:39:70: error: chosen constructor is explicit in copy-initialization int strength = 0, double flamability = 0, map<SquareType, int> constructions = {}, bool ticking = false); The project states the following are requirements for the Linux setup. How can I confirm I'm making that? gcc-4.8.2 git libboost 1.5+ with libboost-serialize libsfml-dev 2+ (Ubuntu ppa that contains libsfml 2: ) freeglut-dev libglew-dev

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• What is the recommended way to package perl scripts for CPAN (and CorporatePAN)?

  - by szabgab

  Recently I looked at a module on CPAN that comes with a script to be installed which made me wonder. What is the recommended way to include a script in a package that should end up on the public CPAN and if there is any different recommendation for packages that would be released on an in-house CPAN server? The script starts like this: #!/usr/bin/perl eval 'exec /usr/bin/perl -S $0 ${1+"$@"}' if 0; # not running under some shell Two questions Do I understand correctly the eval part is unnecessary? That will be embedded by the CPAN client during installation and it will be very different when installing on Windows. What is the recommended sh-bang line? Would that be #!/usr/bin/env perl instead of the above?

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• Query to sum duplicated fields

  - by g0sha

  Here is mysql data id usr good quant delayed cart_ts ------------------------------------------------------ 14 4 1 1 0 20100601235348 13 4 11 1 0 20100601235345 12 4 4 1 0 20100601235335 11 4 1 1 0 20100601235051 10 4 11 1 0 20100601235051 9 4 4 1 0 20100601235051 15 4 2 1 0 20100601235350 16 4 7 1 0 20100602000537 17 4 3 1 0 20100602000610 18 4 3 1 0 20100602000616 19 4 8 1 0 20100602000802 20 4 8 1 0 20100602000806 21 4 8 1 0 20100602000828 22 4 8 1 0 20100602000828 23 4 8 1 0 20100602000828 24 4 8 1 0 20100602000828 25 4 8 1 0 20100602000828 26 4 8 1 0 20100602000829 27 4 8 1 0 20100602000829 28 4 9 1 0 20100602001045 29 4 10 1 0 20100602001046 I need to group fields in witch usr & good has duplicated values with summing quant field for getting smth like this: id usr good quant delayed cart_ts ------------------------------------------------------ 14 4 1 2 0 20100601235348 13 4 11 2 0 20100601235345 12 4 4 2 0 20100601235335 15 4 2 1 0 20100601235350 16 4 7 1 0 20100602000537 17 4 3 2 0 20100602000610 19 4 8 9 0 20100602000802 28 4 9 1 0 20100602001045 29 4 10 1 0 20100602001046 Which MySQL query I need to do to have this effect?

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• How can I change ruby log level in unit tests based on context

  - by Stuart

  I'm new to ruby so forgive me if this is simple or I get some terminology wrong. I've got a bunch of unit tests (actually they're integration tests for another project, but they use ruby test/unit) and they all include from a module that sets up an instance variable for the log object. When I run the individual tests I'd like log.level to be debug, but when I run a suite I'd like log.level to be error. Is it possible to do this with the approach I'm taking, or does the code need to be restructured? Here's a small example of what I have so far. The logging module: #!/usr/bin/env ruby require 'logger' module MyLog def setup @log = Logger.new(STDOUT) @log.level = Logger::DEBUG end end A test: #!/usr/bin/env ruby require 'test/unit' require 'mylog' class Test1 < Test::Unit::TestCase include MyLog def test_something @log.info("About to test something") # Test goes here @log.info("Done testing something") end end A test suite made up of all the tests in its directory: #!/usr/bin/env ruby Dir.foreach(".") do |path| if /it-.*\.rb/.match(File.basename(path)) require path end end

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