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Search found 24 results on 1 pages for 'sge'.

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• SGE: invoking qmake raises "critical error: can't resolve group"

  - by Pierre

  I'm new to SGE an I'm trying to run qmake with the simple following Makefile with our very new cluster: merge.txt: job1.txt job2.txt job3.txt ... cat $^ > $@ job1.txt: sleep 1 echo "Hello From " $@ > $@ sleep 1 job2.txt: sleep 2 echo "Hello From " $@ > $@ sleep 2 job3.txt: (...) the following command…

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• Sun Grid Engine (SGE) / limiting simultaneous array job sub-tasks

  - by wfaulk

  I am installing a Sun Grid Engine environment and I have a scheduler limit that I can't quite figure out how to implement. My users will create array jobs that have hundreds of sub-tasks. I would like to be able to limit those jobs to only running a set number of tasks at the same time, independent of other jobs. Like I might have one…

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• querying sge using job_name

  - by user39212

  Hello, qstat manual says -j [job_list] Prints either for all pending jobs or the jobs con- tained in job_list various information. The job_list can contain job_ids, job_names, or wildcard expression sge_types(1). i.e. qstat -j job_name should work. But whenver I try i get an error…

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• SGE: downtime planning

  - by mousee

  I need to plan a downtime for a maintenance of my environment (or some part of my environment) by means of Sun Grid Engine. Is it possible to somehow use backfilling information to tell the grid engine to plan only those jobs on cluster which are able to finish (i have backfilling information) till let's say 10 am next day? Can I…

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• Avoid generating empty STDOUT and STDERR files with Sun Grid Engine (SGE) and array jobs

  - by vy32

  I am running array jobs with Sun Grid Engine (SGE). My carefully scripted array job workers generate no stdout and no stderr when they function properly. Unfortunately, SGE insists on creating an empty stdout and stderr file for each run. Sun's manual states: STDOUT and STDERR of array job tasks will be…

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• How to specify the equivalent of ppn (on PBS) in SGE queuing system ?

  - by debugger

  Hello All, Is there a way to specify the ppn ( or equivalent ) in SGE ? i don't want to use all cpus in one node so i will be able to have more memory per core. ( In PBS you would do -l nodes=16:ppn=2 for exemple) Thanks.

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• How to specify the equivalent of ppn (on PBS) in SGE queuing system ?

  - by debugger

  Hello All, Is there a way to specify the ppn ( or equivalent ) in SGE ? i don't want to use all cpus in one node so i will be able to have more memory per core. ( In PBS you would do -l nodes=16:ppn=2 for exemple) Thanks.

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• SGE - limit a user to a certain host, using resource quota configuration

  - by pufferfish

  Is it possible to limit a user to a particular host, using the Resource Quota Configuration option in qmon for Sun Grid Engine? I'm thinking of a line to the effect of: { ... limit users {john} to hostname=compute-1-1.local } The documentation mentions built in resource types: slots, arch, mem_total, num_proc,…

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• alternatives to SGE

  - by bmargulies

  Once upon at time there was the free SGE from Sun. tricky to install and configure, but functional and free. Now we've got: open source packages on Ubuntu that don't quite work out of the box (details on request). the actual source behind them, with a build process that depends on the c-shell and other…

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• low performance on HPC cluster (sge) when running multiple jobs

  - by Yotam

  O know this is a long-shot but I'm clueless here. I'm running several computer simulations on High Performance Computation cluster (HPC) of oracale grid engine (sge). A single job runs at a certain speed (roughly 80 steps per second) when I add jobs to the machine, at a certain treshhold, the speed is…

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• Sun Grid Engine (SGE) Jobs Not Visible After Adding virtual_free

  - by Gary Richardson

  I'm trying to to use virtual_free to limit the number of large memory jobs running each grid node in my cluster. This seems to be working as expected. After I modified my code to submit jobs with the memory instances, qstat -f -q $queueName no longer shows a list of jobs waiting for a slot. The jobs…

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• using qsub (sge) with multi-threaded applications

  - by dan12345

  i wanted to submit a multi-threaded job to the cluster network i'm working with - but the man page about qsub is not clear how this is done - By default i guess it just sends it as a normal job regardless of the multi-threading - but this might cause problems, i.e. sending many multi-threaded jobs to…

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• Sun Grid Engine : jobs are not well balanced

  - by GlinesMome

  I use Open Grid Scheduler (a fork/copy of Sun Grid Engine). I have tried this configuration from master: # qconf -mattr exechost complex_values slots=8 slave2 # qconf -mq all.q | grep slots slots 100,[slave1=1],[slave2=8] slave1 is down, then I run 10 qsub with a sleep example (so…

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• Is there a way to tell SGE to run specific jobs as root on the execution node?

  - by Rick Reynolds

  The title kinda says it all... We're using SGE/OGE to submit jobs to a set of worker nodes that then do things with specific pieces of equipment. The programs and scripts that have been created that manipulate this equipment rely on running as root. I'd like SGE to handle allocation of resources…

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• Parallel Environment (PE) on Sun Grid Engine (6.2u5) won't run jobs: "only offers 0 slots"

  - by Peter Van Heusden

  I have Sun Grid Engine set up (version 6.2u5) on a Ubuntu 10.10 server with 8 cores. In order to be able to reserve multiple slots, I have a parallel environment (PE) set up like this: pe_name serial slots 999 user_lists NONE xuser_lists NONE start_proc_args …

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• How to specify the equivalent of ppn (on PBS) in SGE queuing system ?

  - by debugger

  Hello All, Is there a way to specify the ppn ( or equivalent ) in SGE ? i don't want to use all cpus in one node so i will be able to have more memory per core. ( In PBS you would do -l nodes=16:ppn=2 for exemple) Thanks.

  Read the article

• How to specify the equivalent of ppn in SGE queing system ?

  - by debugger

  Hello All, Is there a way to specify the ppn ( or equivalent ) in SGE ? i don't want to use all cpus in one node so i will be able to have more memory per core. ( In PBS you would do -l nodes=16:ppn=2 for exemple) Thanks.

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• Can't configure PAM + LDAP on Debian Lenny - Getting error=49 on server logs

  - by Jorge Suárez de Lis

  I've been migrating some servers and desktops using Ubuntu 10.04 from getting the users from an old OpenLDAP implementation to a newer Centos Active Directory. I haven't had any problems so far, until I reached a Debian Lenny server. I've set up the server as the others, setting /etc/ldap.conf and…

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• Open Grid Engine or Akka/Something more fault tolerant?

  - by Mike Lyons

  My use case is that I have a pipeline of independent, stand alone programs, that I want to execute in a certain order on specific pieces of data that our output from previous pipeline stages. The pipeline is entirely linear and doesn't do anything in terms of alternate paths through the pipe. …

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• Sun Grid Engine: Automatically Terminating Idle Interactive Jobs

  - by dmcer

  We're considering using Sun Grid Engine on a small compute cluster. Right now, the current set up is pretty crude and just involves having people ssh to an open machine to run their jobs. We'd like to allow interactive jobs, since that should ease the transition from manually starting jobs to…

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• How to execute a command on multiple hosts using IPv6 only?

  - by math

  First of all there is pdsh which is essentially a parallel distributed shell which may execute commands on a list of given hosts. However, I find myself in an IPv6 only problem setting. It seems that pdsh is not able to use IPv6, as I am getting error messages: pdsh -w ^hostnames my_command…

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• Is there a DRMAA Java library that works with Torque/PBS?

  - by dondondon

  Does anybody know a Java implementation of the DRMAA-API that is known to work with PBS/Torque cluster software? The background behind this: I would like to submit jobs to a newly set-up linux cluster from java using a DRMAA compliant API. The cluster is managed by PBS/Torque. Torque…

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• JSF index out of bounds exception when submiting a form

  - by selvin

  When I click submit button in a JSF form the following exception occurs. It says an Indexout of bounds exception, but I did not use any ArrayList associated with the code. Is this a bug? what should i do to get rid of this error.. Mojarra: 2.0.2 FCS with primefaces 2.2 JSF: 2.0 …

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• LSI 9285-8e and Supermicro SC837E26-RJBOD1 duplicate enclosure ID and slot numbers

  - by Andy Shinn

  I am working with 2 x Supermicro SC837E26-RJBOD1 chassis connected to a single LSI 9285-8e card in a Supermicro 1U host. There are 28 drives in each chassis for a total of 56 drives in 28 RAID1 mirrors. The problem I am running in to is that there are duplicate slots for the 2…

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