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• xts error - order.by requires an appropriate time-based object

  - by Samo

  I can not resolve why error in simple creation of xts object xts(rep(0, NROW(TICK.NYSE)), order.by = index(TICK.NYSE)) Error in xts(rep(0, NROW(TICK.NYSE)), order.by = index(TICK.NYSE)) : order.by requires an appropriate time-based object appeared while this was working perfectly 14 days ago when I last used the same code (since then the only difference is that TICK.NYSE grow in length since data was added since then). More details below: > Sys.getenv("TZ") [1] "EST" > tail(xts(rep(0, NROW(TICK.NYSE)), order.by = index(TICK.NYSE))) Error in xts(rep(0, NROW(TICK.NYSE)), order.by = index(TICK.NYSE)) : order.by requires an appropriate time-based object > class(index(TICK.NYSE["T09:30/T09:31"])) [1] "POSIXct" > tail(xts(rep(0, NROW(tail(TICK.NYSE))), order.by = index(tail(TICK.NYSE)))) Error in xts(rep(0, NROW(tail(TICK.NYSE))), order.by = index(tail(TICK.NYSE))) : order.by requires an appropriate time-based object > tail(TICK.NYSE) TICK-NYSE.Open TICK-NYSE.High TICK-NYSE.Low TICK-NYSE.Close 2012-03-15 14:54:00 -278 -89 -299 -89 2012-03-15 14:55:00 -89 427 -89 201 2012-03-15 14:56:00 201 318 30 234 2012-03-15 14:57:00 234 242 -222 -64 2012-03-15 14:58:00 -64 346 -82 346 2012-03-15 14:59:00 346 525 36 525 TICK-NYSE.Volume TICK-NYSE.WAP TICK-NYSE.hasGaps 2012-03-15 14:54:00 0 0 0 2012-03-15 14:55:00 0 0 0 2012-03-15 14:56:00 0 0 0 2012-03-15 14:57:00 0 0 0 2012-03-15 14:58:00 0 0 0 2012-03-15 14:59:00 0 0 0 TICK-NYSE.Count 2012-03-15 14:54:00 31 2012-03-15 14:55:00 31 2012-03-15 14:56:00 31 2012-03-15 14:57:00 31 2012-03-15 14:58:00 29 2012-03-15 14:59:00 30 > str(TICK.NYSE) An ‘xts’ object from 2011-01-18 09:30:00 to 2012-03-15 14:59:00 containing: Data: num [1:114090, 1:8] -5 -144 24 -148 -184 -77 20 121 111 -60 ... - attr(*, "dimnames")=List of 2 ..$ : NULL ..$ : chr [1:8] "TICK-NYSE.Open" "TICK-NYSE.High" "TICK-NYSE.Low" "TICK-NYSE.Close" ... Indexed by objects of class: [POSIXct,POSIXt] TZ: xts Attributes: List of 4 $ from : chr "20110119 23:59:59" $ to : chr "20110124 23:59:59" $ src : chr "IB" $ updated: POSIXct[1:1], format: "2012-01-19 02:34:52" > str(index(TICK.NYSE)) Class 'POSIXct' atomic [1:114090] 1.3e+09 1.3e+09 1.3e+09 1.3e+09 1.3e+09 ... ..- attr(*, "tzone")= chr "" ..- attr(*, "tclass")= chr [1:2] "POSIXct" "POSIXt" > Sys.getenv("TZ") [1] "EST" > tail(index(TICK.NYSE)) [1] "2012-03-15 14:54:00 EST" "2012-03-15 14:55:00 EST" [3] "2012-03-15 14:56:00 EST" "2012-03-15 14:57:00 EST" [5] "2012-03-15 14:58:00 EST" "2012-03-15 14:59:00 EST" > head(index(TICK.NYSE)) [1] "2011-01-18 09:30:00 EST" "2011-01-18 09:31:00 EST" [3] "2011-01-18 09:32:00 EST" "2011-01-18 09:33:00 EST" [5] "2011-01-18 09:34:00 EST" "2011-01-18 09:35:00 EST" > Sys.info() sysname "Linux" release "3.0.0-16-generic" version "#28-Ubuntu SMP Fri Jan 27 17:44:39 UTC 2012" > sessionInfo() R version 2.14.1 (2011-12-22) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=en_US.UTF-8 [9] LC_ADDRESS=en_US.UTF-8 LC_TELEPHONE=en_US.UTF-8 [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] lattice_0.20-0 multicore_0.1-7 [3] doSNOW_1.0.5 snow_0.3-8 [5] doRedis_1.0.4 rredis_1.6.3 [7] foreach_1.3.2 codetools_0.2-8 [9] iterators_1.0.5 PerformanceAnalytics_1.0.3.3 [11] quantstrat_0.6.1 blotter_0.8.4 [13] twsInstrument_1.3-3 FinancialInstrument_0.10.6 [15] IBrokers_0.9-6 quantmod_0.3-18 [17] TTR_0.21-0 xts_0.8-4 [19] Defaults_1.1-1 strucchange_1.4-6 [21] sandwich_2.2-8 zoo_1.7-7 [23] rj_1.0.2-5 loaded via a namespace (and not attached): [1] grid_2.14.1 tools_2.14.1 > dput(tail(TICK.NYSE)) structure(c(-385, -213, -42, -334, -233, -111, -121, 20, -14, -125, -73, 265, -583, -269, -426, -520, -443, -440, -213, -42, -334, -233, -111, 119, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 31, 31, 30, 30, 31, 31), class = c("xts", "zoo" ), .indexCLASS = c("POSIXct", "POSIXt"), .indexTZ = "", from = "20110119 23:59:59", to = "20110124 23:59:59", src = "IB", updated = structure(1326958492.96405, class = c("POSIXct", "POSIXt")), index = structure(c(1331927640, 1331927700, 1331927760, 1331927820, 1331927880, 1331927940), tzone = "", tclass = c("POSIXct", "POSIXt")), .Dim = c(6L, 8L), .Dimnames = list(NULL, c("TICK-NYSE.Open", "TICK-NYSE.High", "TICK-NYSE.Low", "TICK-NYSE.Close", "TICK-NYSE.Volume", "TICK-NYSE.WAP", "TICK-NYSE.hasGaps", "TICK-NYSE.Count")))

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• endpoints (bug?) behavior in xts

  - by Alex

  If I try to get endpoints for every year, for example, and do the following: xts.data <- xts(1:10000, order.by=seq(from=as.Date("1970-01-01"), by=1, len=10000)) z <- endpoints(xts.data, on="months", k=12) The return value for this is: > z [1] 0 10000 Same with numbers higher than 12. Why would xts simply not return indices of every year or 13th month starting from the beginning. Is it limited by the number of periods in a year? That is if i did: z <- endpoints(xts.data, on="weeks", k=54) This seems to work fine.

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• R - Subsetting XTS via Time and Which

  - by user2844947

  Currently, I have a XTS, called Data, which contains a Date, and two value columns which are numbers. I would like to get a single number as output and which would be the mean of Value1 in the time period from a point where Value2 < mean(Value2) and going forward 14 data points, weeks in this particular data set. In order to get the dates where Value2 < mean(Value2), I wrote the below code Data[which(Data$Value2 < mean(Data$Value2)),"Date"] However, I am not sure how to get the mean of Value1 in the period, going 14 days forward from each of the resultant dates from the above code.

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• Is there a work around for slow performance of do.call(cbind.xts,...) in R 2.15.2?

  - by Petr Matousu

  I would expect cbind.xts and do.call(cbind.xts) to perform with similar elapsed time. That was true for R2.11, R2.14. For R2.15.2 and xts 0.8-8, the do.call(cbind.xts,...) variant performs drastically slower, which effectively breaks my previous codes. As Josh Ulrich notes in a comment below, the xts package maintainers are aware of this problem. In the meantime, is there a convenient work around?

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• AES-XTS implementation in C#

  - by Ranhiru

  Is there any implementation of AES-XTS written in C# available in the Internet? Bouncy Castle disappointed me :( I took the source codes of TrueCrypt and FreeOTFE but they are written in C which is very hard for me to understand... Anyone?

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• C++ .NET DLL vs C# Managed Code ? (File Encrypting AES-128+XTS)

  - by Ranhiru

  I need to create a Windows Mobile Application (WinMo 6.x - C#) which is used to encrypt/decrypt files. However it is my duty to write the encryption algorithm which is AES-128 along with XTS as the mode of operation. RijndaelManaged just doesn't cut it :( Very much slower than DES and 3DES CryptoServiceProviders :O I know it all depends on how good I am at writing the algorithm in the most efficient way. (And yes I my self have to write it from scratch but i can take a look @ other implementations) Nevertheless, does writing a C++ .NET DLL to create the encryption/decryption algorithm + all the file handling and using it from C# have a significant performance advantage OVER writing the encryption algorithm + file handling in completely managed C# code? If I use C++ .NET to create the encryption algorithm, should I use MFC Smart Device DLL or ATL? What is the difference and is there any impact on which one I choose? And can i just add a reference to the C++ DLL from C# or should I use P/Invoke? I am fairly competent with C# than C++ but performance plays a major role as I have convinced my lecturers that AES is a very efficient cryptographic algorithm for resource constrained devices. Thanx a bunch :)

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• Subset and lagging list data structure R

  - by user1234440

  I have a list that is indexed like the following: >list.stuff [[1]] [[1]]$vector ... [[1]]$matrix .... [[1]]$vector [[2]] null [[3]] [[3]]$vector ... [[3]]$matrix .... [[3]]$vector . . . Each segment in the list is indexed according to another vector of indexes: >index.list 1, 3, 5, 10, 15 In list.stuff, only at each of the indexes 1,3,5,10,15 will there be 2 vectors and one matrix; everything else will be null like [[2]]. What I want to do is to lag like the lag.xts function so that whatever is stored in [[1]] will be pushed to [[3]] and the last one drops off. This also requires subsetting the list, if its possible. I was wondering if there exists some functions that handle list manipulation. My thinking is that for xts, a time series can be extracted based on an index you supply: xts.object[index,] #returns the rows 1,3,5,10,15 From here I can lag it with: lag.xts(xts.object[index,]) Any help would be appreciated thanks: EDIT: Here is a reproducible example: list.stuff<-list() vec<-c(1,2,3,4,5,6,7,8,9) vec2<-c(1,2,3,4,5,6,7,8,9) mat<-matrix(c(1,2,3,4,5,6,7,8),4,2) list.vec.mat<-list(vec=vec,mat=mat,vec2=vec2) ind<-c(2,4,6,8,10) for(i in ind){ list.stuff[[i]]<-list.vec.mat }

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• Very poor read performance compared to write performance on md(raid1) / crypt(luks) / lvm

  - by Android5360

  I'm experiencing very poor read performance over raid1/crypt/lvm. In the same time, write speeds are about 2x+ faster on the same setup. On another raid1 setup on the same machine I get normal read speeds (maybe because I'm not using cryptsetup). OS related disks: sda + sdb. I have raid1 configuration with two disks, both are in place. I'm using LVM over the RAID. No encryption. Both disks are WD Green, 5400 rpm. IO test results on this raid1: dd if=/dev/zero of=/tmp/output.img3 bs=8k count=256k conv=fsync - 2147483648 bytes (2.1 GB) copied, 22.3392 s, 96.1 MB/s sync echo 3 > /proc/sys/vm/drop_caches dd if=/tmp/output.img3 of=/dev/null bs=8k - 2147483648 bytes (2.1 GB) copied, 15.9 s, 135 MB/s And here is the problematic setup (on the same machine). Currently I have only one sdc (WD Green, 5400rpm) configured in software raid1 + crypt (luks, serpent-xts-plain) + lvm. Tomorrow I will attach another disk (sdd) to complete this two-disk raid1 setup. IO tests results on this raid1: dd if=/dev/zero of=output.img3 bs=8k count=256k conv=fsync 2147483648 bytes (2.1 GB) copied, 17.7235 s, 121 MB/s sync echo 3 > /proc/sys/vm/drop_caches dd if=output.img3 of=/dev/null bs=8k 2147483648 bytes (2.1 GB) copied, 36.2454 s, 59.2 MB/s We can see that the read performance is very very bad (59MB/s compared to 135MB/s when using no encryption). Nothing is using the disks during benchmark. I can confirm this because I checked with iostat and dstat. Details on the hardware: disks: all are WD green, 5400rpm, 64mb cache. cpu: FX-8350 at stock speed ram: 4x4GB at 1066Mhz. Details on the software: OS: Debian Wheezy 7, amd64 mdadm: v3.2.5 - 18th May 2012 LVM version: 2.02.95(2) (2012-03-06) LVM Library version: 1.02.74 (2012-03-06) LVM Driver version: 4.22.0 cryptsetup: 1.4.3 Here is how I configured the slow raid1+crypt+lvm setup: parted /dev/sdc mklabel gpt type: ext4 start: 2048s end: -1 Now the raid, crypt and the lvm configuration: mdadm --create /dev/md1 --level=1 --raid-disks=2 missing /dev/sdc cryptsetup --cipher serpent-xts-plain luksFormat /dev/md1 cryptsetup luksOpen /dev/md1 md1_crypt vgcreate vg_sql /dev/mapper/md1_crypt lvcreate -l 100%VG vg_sql -n lv_sql mkfs.ext4 /dev/mapper/vg_sql-lv-sql mount /dev/mapper/vg_sql-lv_sql /sql So guys, can you help me identify the reason and fix it? It has to be something with the cryptsetup as there is no such read slowdown on the other setup (sda+sdb) where no encryption is present. But I have no idea what to do. Thanks!

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• How do you re-arrange vector order in R?

  - by Milktrader

  I have three vectors in an xts R object. Call them V1, V2, V3. After merging, the order of them left to right is V2, V3, V1. How do I re-arrange them so they read (from left to right) as V1, V2, V3?

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• Linux bcm43224 wifi adapter slows down a couple minutes after boot

  - by Blubber

  I just installed Ubuntu on my mid 2012 MacBook Air. Everything worked out of the box, but the wifi is showing some weird behavior. When I first login it's really fast, loading google.com is near instant, and browsing in general feels at least as smooth as it did on Mac OS. However, after a couple minutes the connection slows down dramatically, sometimes it takes over 5s to load google.com, a simple reboot fixes the problem for another couple minutes. Specs: Wifi: 02:00.0 Network controller: Broadcom Corporation BCM43224 802.11a/b/g/n (rev 01) Driver: open-source brcmsmac driver Kernel: Linux wega 3.8.0-21-generic #32-Ubuntu SMP Tue May 14 22:16:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux Distro: Ubuntu 13.04 (uptodate) I tried a number of things, none of which actually helped Use proprietary sta driver from broadcom Installed firmware into /lib/firmware/brcms (which, as far as I can tell from logs, does not get loaded at all) Switch router to only use 2.4 OR 5 GHz Set router to only use a OR g OR n Set router to use AES encryption only Turned off power management on the adapter Set regulatory region to the correct value (NL) on both router and laptop Disable ipv6 Nothing seems to help, the slowdown always occurs. I did notice that the latency (ping google.com) stays roughly the same (around 9ms). Below is some more information that might be of use. $ lspci -nnk | grep -iA2 net 02:00.0 Network controller [0280]: Broadcom Corporation BCM43224 802.11a/b/g/n [14e4:4353] (rev 01) Subsystem: Apple Inc. Device [106b:00e9] Kernel driver in use: bcma-pci-bridge $ rfkill list 0: hci0: Bluetooth Soft blocked: no Hard blocked: no 1: phy0: Wireless LAN Soft blocked: no Hard blocked: no $ lsmod Module Size Used by dm_crypt 22820 1 arc4 12615 2 brcmsmac 550698 0 coretemp 13355 0 kvm_intel 132891 0 parport_pc 28152 0 kvm 443165 1 kvm_intel ppdev 17073 0 cordic 12574 1 brcmsmac brcmutil 14755 1 brcmsmac mac80211 606457 1 brcmsmac cfg80211 510937 2 brcmsmac,mac80211 bnep 18036 2 rfcomm 42641 12 joydev 17377 0 applesmc 19353 0 input_polldev 13896 1 applesmc snd_hda_codec_hdmi 36913 1 microcode 22881 0 snd_hda_codec_cirrus 23829 1 nls_iso8859_1 12713 1 uvcvideo 80847 0 btusb 22474 0 snd_hda_intel 39619 3 videobuf2_vmalloc 13056 1 uvcvideo snd_hda_codec 136453 3 snd_hda_codec_hdmi,snd_hda_intel,snd_hda_codec_cirrus bcm5974 17347 0 bluetooth 228619 22 bnep,btusb,rfcomm snd_hwdep 13602 1 snd_hda_codec lpc_ich 17061 0 videobuf2_memops 13202 1 videobuf2_vmalloc videobuf2_core 40513 1 uvcvideo videodev 129260 2 uvcvideo,videobuf2_core bcma 41051 1 brcmsmac snd_pcm 97451 3 snd_hda_codec_hdmi,snd_hda_codec,snd_hda_intel snd_page_alloc 18710 2 snd_pcm,snd_hda_intel snd_seq_midi 13324 0 snd_seq_midi_event 14899 1 snd_seq_midi snd_rawmidi 30180 1 snd_seq_midi snd_seq 61554 2 snd_seq_midi_event,snd_seq_midi snd_seq_device 14497 3 snd_seq,snd_rawmidi,snd_seq_midi snd_timer 29425 2 snd_pcm,snd_seq snd 68876 16 snd_hwdep,snd_timer,snd_hda_codec_hdmi,snd_pcm,snd_seq,snd_rawmidi,snd_hda_codec,snd_hda_intel,snd_seq_device,snd_hda_codec_cirrus mei 41158 0 soundcore 12680 1 snd apple_bl 13673 0 mac_hid 13205 0 lp 17759 0 parport 46345 3 lp,ppdev,parport_pc usb_storage 57204 0 hid_apple 13237 0 hid_generic 12540 0 ghash_clmulni_intel 13259 0 aesni_intel 55399 399 aes_x86_64 17255 1 aesni_intel xts 12885 1 aesni_intel lrw 13257 1 aesni_intel gf128mul 14951 2 lrw,xts ablk_helper 13597 1 aesni_intel cryptd 20373 4 ghash_clmulni_intel,aesni_intel,ablk_helper i915 600351 3 ahci 25731 3 libahci 31364 1 ahci video 19390 1 i915 i2c_algo_bit 13413 1 i915 drm_kms_helper 49394 1 i915 usbhid 47074 0 drm 286313 4 i915,drm_kms_helper hid 101002 3 hid_generic,usbhid,hid_apple $ dmesg | egrep 'b43|bcma|brcm|[F]irm' [ 0.055025] [Firmware Bug]: ioapic 2 has no mapping iommu, interrupt remapping will be disabled [ 0.152336] [Firmware Bug]: ACPI: BIOS _OSI(Linux) query ignored [ 2.187681] pci_root PNP0A08:00: [Firmware Info]: MMCONFIG for domain 0000 [bus 00-99] only partially covers this bridge [ 12.553600] bcma-pci-bridge 0000:02:00.0: enabling device (0000 -> 0002) [ 12.553657] bcma: bus0: Found chip with id 0xA8D8, rev 0x01 and package 0x08 [ 12.553688] bcma: bus0: Core 0 found: ChipCommon (manuf 0x4BF, id 0x800, rev 0x22, class 0x0) [ 12.553715] bcma: bus0: Core 1 found: IEEE 802.11 (manuf 0x4BF, id 0x812, rev 0x17, class 0x0) [ 12.553764] bcma: bus0: Core 2 found: PCIe (manuf 0x4BF, id 0x820, rev 0x0F, class 0x0) [ 12.605777] bcma: bus0: Bus registered [ 12.852925] brcmsmac bcma0:0: mfg 4bf core 812 rev 23 class 0 irq 17 [ 13.085176] brcmsmac bcma0:0: brcms_ops_bss_info_changed: qos enabled: false (implement) [ 13.085186] brcmsmac bcma0:0: brcms_ops_config: change power-save mode: false (implement) [ 20.862617] brcmsmac bcma0:0: brcmsmac: brcms_ops_bss_info_changed: associated [ 20.862622] brcmsmac bcma0:0: brcms_ops_bss_info_changed: arp filtering: enabled true, count 0 (implement) [ 20.862625] brcmsmac bcma0:0: brcms_ops_bss_info_changed: qos enabled: true (implement) [ 20.897957] brcmsmac bcma0:0: brcms_ops_bss_info_changed: arp filtering: enabled true, count 1 (implement) $ iwconfig lo no wireless extensions. wlan0 IEEE 802.11abgn ESSID:"wlan" Mode:Managed Frequency:5.22 GHz Access Point: E0:46:9A:4E:63:9A Bit Rate=65 Mb/s Tx-Power=17 dBm Retry long limit:7 RTS thr:off Fragment thr:off Power Management:off Link Quality=63/70 Signal level=-47 dBm Rx invalid nwid:0 Rx invalid crypt:0 Rx invalid frag:0 Tx excessive retries:13 Invalid misc:56 Missed beacon:0

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• How do I get a rt2800usb wireless device working?

  - by Jii

  My brand new desktop running 13.04 has endless problems with wireless. Dozens of others are flooding forums with reports of the same problems. It worked fine for a few days, then there were a few days where it started having problems sometimes and working sometimes. Now it never works at all. I have 5+ devices all able to connect without any trouble at all, including iPhone, Android phone, 3DS, multiple game consoles, a laptop running windows 7, and even a second desktop machine running Ubuntu 12.04 sitting right behind the 13.04 machine. All other devices have full wireless bars displayed (strong signals). At any moment, one of the following is happening, and it changes randomly: Trying to connect forever, but never establishing a connection. Wireless icon constantly animating. Finds no wireless networks at all. (There are 12+ in range according to other devices.) Will not try to connect to the network. If I use the icon to connect, it will display "Disconnected" within a few seconds. Will continuously ask for the network password. Typing it in correctly does not help. Wireless is working fine. This happens sometimes. It can work for days at a time, or only 10 mins at a time. Various things that usually do nothing but sometimes fix the problem: Reboot. This has the best chance of helping, but it usually takes 5+ times. Disable/re-enable Wi-Fi using the wireless icon. Disable/re-enable Networking using the wireless icon. Use the icon to try and connect to a network (if found). Use the icon to open Edit Connections and delete my connection info, causing it to be recreated (once it's actually found again). Various things that seem to make no difference: Changing between using Linux headers in grub at bootup, between 3.10.0, 3.9.0, or 3.8.0. Move the wireless router very close to the desktop. Running sudo rfkill unblock all (I dunno what this is supposed to do.) I've used Ubuntu for 6 years and I've never had a problem with networking. Now I'm spending all my time reading through endless problem reports and trying all the answers. None of them have helped. I am doing this instead of getting work done, which is defeating the whole purpose of using Ubuntu. It's heartbreaking to be honest. In the current state of "no networks are showing up", here are outputs from the random things that other people are usually asked to run: lspic 00:00.0 Host bridge: Intel Corporation Haswell DRAM Controller (rev 06) 00:01.0 PCI bridge: Intel Corporation Haswell PCI Express x16 Controller (rev 06) 00:14.0 USB controller: Intel Corporation Lynx Point USB xHCI Host Controller (rev 04) 00:16.0 Communication controller: Intel Corporation Lynx Point MEI Controller #1 (rev 04) 00:19.0 Ethernet controller: Intel Corporation Ethernet Connection I217-V (rev 04) 00:1a.0 USB controller: Intel Corporation Lynx Point USB Enhanced Host Controller #2 (rev 04) 00:1b.0 Audio device: Intel Corporation Lynx Point High Definition Audio Controller (rev 04) 00:1c.0 PCI bridge: Intel Corporation Lynx Point PCI Express Root Port #1 (rev d4) 00:1c.2 PCI bridge: Intel Corporation 82801 PCI Bridge (rev d4) 00:1d.0 USB controller: Intel Corporation Lynx Point USB Enhanced Host Controller #1 (rev 04) 00:1f.0 ISA bridge: Intel Corporation Lynx Point LPC Controller (rev 04) 00:1f.2 SATA controller: Intel Corporation Lynx Point 6-port SATA Controller 1 [AHCI mode] (rev 04) 00:1f.3 SMBus: Intel Corporation Lynx Point SMBus Controller (rev 04) 01:00.0 VGA compatible controller: NVIDIA Corporation GF119 [GeForce GT 610] (rev a1) 01:00.1 Audio device: NVIDIA Corporation GF119 HDMI Audio Controller (rev a1) 03:00.0 PCI bridge: ASMedia Technology Inc. ASM1083/1085 PCIe to PCI Bridge (rev 03) lsmod Module Size Used by e100 41119 0 nls_iso8859_1 12713 1 parport_pc 28284 0 ppdev 17106 0 bnep 18258 2 rfcomm 47863 12 binfmt_misc 17540 1 arc4 12573 2 rt2800usb 27201 0 rt2x00usb 20857 1 rt2800usb rt2800lib 68029 1 rt2800usb rt2x00lib 55764 3 rt2x00usb,rt2800lib,rt2800usb coretemp 13596 0 mac80211 656164 3 rt2x00lib,rt2x00usb,rt2800lib kvm_intel 138733 0 kvm 452835 1 kvm_intel cfg80211 547224 2 mac80211,rt2x00lib crc_ccitt 12707 1 rt2800lib ghash_clmulni_intel 13259 0 aesni_intel 55449 0 usb_storage 61749 1 aes_x86_64 17131 1 aesni_intel joydev 17613 0 xts 12922 1 aesni_intel nouveau 1001310 3 snd_hda_codec_hdmi 37407 1 lrw 13294 1 aesni_intel gf128mul 14951 2 lrw,xts mxm_wmi 13021 1 nouveau snd_hda_codec_realtek 46511 1 ablk_helper 13597 1 aesni_intel wmi 19256 2 mxm_wmi,nouveau snd_hda_intel 44397 5 ttm 88251 1 nouveau drm_kms_helper 49082 1 nouveau drm 295908 5 ttm,drm_kms_helper,nouveau snd_hda_codec 190010 3 snd_hda_codec_realtek,snd_hda_codec_hdmi,snd_hda_intel cryptd 20501 3 ghash_clmulni_intel,aesni_intel,ablk_helper snd_hwdep 13613 1 snd_hda_codec snd_pcm 102477 3 snd_hda_codec_hdmi,snd_hda_codec,snd_hda_intel btusb 18291 0 snd_page_alloc 18798 2 snd_pcm,snd_hda_intel snd_seq_midi 13324 0 i2c_algo_bit 13564 1 nouveau snd_seq_midi_event 14899 1 snd_seq_midi snd_rawmidi 30417 1 snd_seq_midi snd_seq 61930 2 snd_seq_midi_event,snd_seq_midi bluetooth 251354 22 bnep,btusb,rfcomm snd_seq_device 14497 3 snd_seq,snd_rawmidi,snd_seq_midi lpc_ich 17060 0 snd_timer 29989 2 snd_pcm,snd_seq mei 46588 0 snd 69533 20 snd_hda_codec_realtek,snd_hwdep,snd_timer,snd_hda_codec_hdmi,snd_pcm,snd_seq,snd_rawmidi,snd_hda_codec,snd_hda_intel,snd_seq_device psmouse 97838 0 microcode 22923 0 soundcore 12680 1 snd video 19467 1 nouveau mac_hid 13253 0 serio_raw 13215 0 lp 17799 0 parport 46562 3 lp,ppdev,parport_pc hid_generic 12548 0 usbhid 47346 0 hid 101248 2 hid_generic,usbhid ahci 30063 3 libahci 32088 1 ahci e1000e 207005 0 ptp 18668 1 e1000e pps_core 14080 1 ptp sudo lshw -c network 00:00.0 Host bridge: Intel Corporation Haswell DRAM Controller (rev 06) 00:01.0 PCI bridge: Intel Corporation Haswell PCI Express x16 Controller (rev 06) 00:14.0 USB controller: Intel Corporation Lynx Point USB xHCI Host Controller (rev 04) 00:16.0 Communication controller: Intel Corporation Lynx Point MEI Controller #1 (rev 04) 00:19.0 Ethernet controller: Intel Corporation Ethernet Connection I217-V (rev 04) 00:1a.0 USB controller: Intel Corporation Lynx Point USB Enhanced Host Controller #2 (rev 04) 00:1b.0 Audio device: Intel Corporation Lynx Point High Definition Audio Controller (rev 04) 00:1c.0 PCI bridge: Intel Corporation Lynx Point PCI Express Root Port #1 (rev d4) 00:1c.2 PCI bridge: Intel Corporation 82801 PCI Bridge (rev d4) 00:1d.0 USB controller: Intel Corporation Lynx Point USB Enhanced Host Controller #1 (rev 04) 00:1f.0 ISA bridge: Intel Corporation Lynx Point LPC Controller (rev 04) 00:1f.2 SATA controller: Intel Corporation Lynx Point 6-port SATA Controller 1 [AHCI mode] (rev 04) 00:1f.3 SMBus: Intel Corporation Lynx Point SMBus Controller (rev 04) 01:00.0 VGA compatible controller: NVIDIA Corporation GF119 [GeForce GT 610] (rev a1) 01:00.1 Audio device: NVIDIA Corporation GF119 HDMI Audio Controller (rev a1) 03:00.0 PCI bridge: ASMedia Technology Inc. ASM1083/1085 PCIe to PCI Bridge (rev 03) sudo iwconfig eth0 no wireless extensions. lo no wireless extensions. wlan0 IEEE 802.11bgn ESSID:off/any Mode:Managed Access Point: Not-Associated Tx-Power=20 dBm Retry long limit:7 RTS thr:off Fragment thr:off Encryption key:off Power Management:on sudo iwlist scan eth0 Interface doesn't support scanning. lo Interface doesn't support scanning. wlan0 No scan results NOTE: This dmesg was done after a reboot where the network manager was continuously displaying the "disconnected" message over and over. So it must have been trying to connect at this time. My network was displayed in the list of options, as the only option despite other devices picking up 12+ access points. The router channel is set to auto. dmesg | tail -30 [ 187.418446] wlan0: associated [ 190.405601] wlan0: disassociated from 00:14:d1:a8:c3:44 (Reason: 15) [ 190.443312] cfg80211: Calling CRDA to update world regulatory domain [ 190.443431] wlan0: deauthenticating from 00:14:d1:a8:c3:44 by local choice (reason=3) [ 190.451635] cfg80211: World regulatory domain updated: [ 190.451643] cfg80211: (start_freq - end_freq @ bandwidth), (max_antenna_gain, max_eirp) [ 190.451648] cfg80211: (2402000 KHz - 2472000 KHz @ 40000 KHz), (300 mBi, 2000 mBm) [ 190.451652] cfg80211: (2457000 KHz - 2482000 KHz @ 20000 KHz), (300 mBi, 2000 mBm) [ 190.451656] cfg80211: (2474000 KHz - 2494000 KHz @ 20000 KHz), (300 mBi, 2000 mBm) [ 190.451659] cfg80211: (5170000 KHz - 5250000 KHz @ 40000 KHz), (300 mBi, 2000 mBm) [ 190.451662] cfg80211: (5735000 KHz - 5835000 KHz @ 40000 KHz), (300 mBi, 2000 mBm) [ 191.824451] wlan0: authenticate with 00:14:d1:a8:c3:44 [ 191.850608] wlan0: send auth to 00:14:d1:a8:c3:44 (try 1/3) [ 191.884604] wlan0: send auth to 00:14:d1:a8:c3:44 (try 2/3) [ 191.886309] wlan0: authenticated [ 191.886579] rt2800usb 3-5.3:1.0 wlan0: disabling HT as WMM/QoS is not supported by the AP [ 191.886588] rt2800usb 3-5.3:1.0 wlan0: disabling VHT as WMM/QoS is not supported by the AP [ 191.889556] wlan0: associate with 00:14:d1:a8:c3:44 (try 1/3) [ 192.001493] wlan0: associate with 00:14:d1:a8:c3:44 (try 2/3) [ 192.040274] wlan0: RX AssocResp from 00:14:d1:a8:c3:44 (capab=0x431 status=0 aid=3) [ 192.044235] wlan0: associated [ 193.948188] wlan0: deauthenticating from 00:14:d1:a8:c3:44 by local choice (reason=3) [ 193.981501] cfg80211: Calling CRDA to update world regulatory domain [ 193.984080] cfg80211: World regulatory domain updated: [ 193.984082] cfg80211: (start_freq - end_freq @ bandwidth), (max_antenna_gain, max_eirp) [ 193.984084] cfg80211: (2402000 KHz - 2472000 KHz @ 40000 KHz), (300 mBi, 2000 mBm) [ 193.984085] cfg80211: (2457000 KHz - 2482000 KHz @ 20000 KHz), (300 mBi, 2000 mBm) [ 193.984085] cfg80211: (2474000 KHz - 2494000 KHz @ 20000 KHz), (300 mBi, 2000 mBm) [ 193.984086] cfg80211: (5170000 KHz - 5250000 KHz @ 40000 KHz), (300 mBi, 2000 mBm) [ 193.984087] cfg80211: (5735000 KHz - 5835000 KHz @ 40000 KHz), (300 mBi, 2000 mBm) The router uses MAC filtering, and security is WPA PSK with cipher as auto. So, any ideas? Or is the solution just to not use 13.04 unless you have a wired connection? (I don't have this option.) If so, please just tell me straight. I survived 9.04 Jaunty, and I can survive 13.04 Raring. Update #1 Results from trying Wild Man's first answer: jii@conan:~$ echo "options rt2800usb nohwcrypt=y" | sudo tee /etc/modprobe.d/rt2800usb.conf options rt2800usb nohwcrypt=y jii@conan:~$ sudo modprobe -rfv rt2800usb rmmod rt2800usb rmmod rt2800lib rmmod crc_ccitt rmmod rt2x00usb rmmod rt2x00lib rmmod mac80211 rmmod cfg80211 jii@conan:~$ sudo modprobe -v rt2800usb insmod /lib/modules/3.10.0-031000-generic/kernel/lib/crc-ccitt.ko insmod /lib/modules/3.10.0-031000-generic/kernel/net/wireless/cfg80211.ko insmod /lib/modules/3.10.0-031000-generic/kernel/net/mac80211/mac80211.ko insmod /lib/modules/3.10.0-031000-generic/kernel/drivers/net/wireless/rt2x00/rt2x00lib.ko insmod /lib/modules/3.10.0-031000-generic/kernel/drivers/net/wireless/rt2x00/rt2800lib.ko insmod /lib/modules/3.10.0-031000-generic/kernel/drivers/net/wireless/rt2x00/rt2x00usb.ko insmod /lib/modules/3.10.0-031000-generic/kernel/drivers/net/wireless/rt2x00/rt2800usb.ko nohwcrypt=y I tried: gksudo gedit /etc/pm/power.d/wireless but I didn't have the package. It said to install gksu. I tried that, but of course, not having Internet, I didn't get the package. So instead I did: sudo gedit /etc/pm/power.d/wireless Which created the file. Here is the body: #!/bin/sh /sbin/iwconfig wlan0 power off I then rebooted. No change. I tried adding exit 0 to the bottom of the wireless file, and rebooted. No change. Please note that this is a desktop machine. I'm assuming power management is primarily for laptops, but the iwconfig does state that power management is on, so who knows. The recommended router changes I did not do, since the current router settings are (I think) required for some of the older devices I have, and because the current settings work on all my modern devices including Ubuntu 12.04 and Windows 7. I do appreciate the advice though, and I'll look into it when I have time. Anything else to try? Update #2 I booted into Ubuntu 12.04.3 from a dvd, and the same problems exist. I have a separate old desktop machine with 12.04 installed that has no wireless problems at all. So obviously the problem is wireless hardware compatibility in both 12.04.03 LTS and 13.04. Update #3 The same problems exist even when using a wired connection. I plugged an ethernet cable directly to the router and the network manager added an "Auto Ethernet" entry, but it cannot establish a connection to it. So the problem is not specific to wireless. Meanwhile, I purchased a Trendnet N300 wireless USB adapter, TEW-664UB. I plugged it in, but I have no idea how to get Ubuntu to try and use it. Can anyone tell me how? Can I download a package on another computer and copy the .deb over to do an install, etc? I'm installing windows 7 to double check that the internet connection works there and it's not just some magically faulty hardware. Thanks for your help.

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• Bad performance with Linux software RAID5 and LUKS encryption

  - by Philipp Wendler

  I have set up a Linux software RAID5 on three hard drives and want to encrypt it with cryptsetup/LUKS. My tests showed that the encryption leads to a massive performance decrease that I cannot explain. The RAID5 is able to write 187 MB/s [1] without encryption. With encryption on top of it, write speed is down to about 40 MB/s. The RAID has a chunk size of 512K and a write intent bitmap. I used -c aes-xts-plain -s 512 --align-payload=2048 as the parameters for cryptsetup luksFormat, so the payload should be aligned to 2048 blocks of 512 bytes (i.e., 1MB). cryptsetup luksDump shows a payload offset of 4096. So I think the alignment is correct and fits to the RAID chunk size. The CPU is not the bottleneck, as it has hardware support for AES (aesni_intel). If I write on another drive (an SSD with LVM) that is also encrypted, I do have a write speed of 150 MB/s. top shows that the CPU usage is indeed very low, only the RAID5 xor takes 14%. I also tried putting a filesystem (ext4) directly on the unencrypted RAID so see if the layering is problem. The filesystem decreases the performance a little bit as expected, but by far not that much (write speed varying, but 100 MB/s). Summary: Disks + RAID5: good Disks + RAID5 + ext4: good Disks + RAID5 + encryption: bad SSD + encryption + LVM + ext4: good The read performance is not affected by the encryption, it is 207 MB/s without and 205 MB/s with encryption (also showing that CPU power is not the problem). What can I do to improve the write performance of the encrypted RAID? [1] All speed measurements were done with several runs of dd if=/dev/zero of=DEV bs=100M count=100 (i.e., writing 10G in blocks of 100M). Edit: If this helps: I'm using Ubuntu 11.04 64bit with Linux 2.6.38. Edit2: The performance stays approximately the same if I pass a block size of 4KB, 1MB or 10MB to dd.

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• rbind.zoo doesn't seem create consistent zoo object

  - by a-or-b

  I want to rbind.zoo two zoo object together. When I was testing I came across the following issue(?)... Note: The below is an example, there is clearly no point to it apart from being illustrative. I have an zoo object, call it, 'X'. I want to break it into two parts and then rbind.zoo them together. When I compare it to the original object then all.equal gives differences. It appears that the '$class' attribute differs, but I can't see how or why. Is I make these xts objects then the all.equal works as expected. i.e. ..... X.date <- as.POSIXct(paste("2003-", rep(1:4, 4:1), "-", sample(1:28, 10, replace = TRUE), sep = "")) X <- zoo(matrix(rnorm(24), ncol = 2), X.date) a <- X[c(1:3), ] # first 3 elements b <- X[c(4:6), ] # second 3 elements c <- rbind.zoo(a, b) # rbind into an object of 6 elements d <- X[c(1:6), ] # all 6 elements all.equal(c, d) # are they equal? ~~~~ all.equal gives me the following difference: "Attributes: < Component 3: Attributes: < Length mismatch: comparison on first 1 components "

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