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  • Creating multiple csv files from data within a csv file.

    - by S1syphus
    System OSX or Linux I'm trying to automate my work flow at work, each week I receive an excel file, which I convert to a csv. An example is: ,,L1,,,L2,,,L3,,,L4,,,L5,,,L6,,,L7,,,L8,,,L9,,,L10,,,L11, Title,r/t,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,neede d,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst EXAMPLEfoo,60,6,6,6,0,0,0,0,0,0,6,6,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 EXAMPLEbar,30,6,6,12,6,7,14,6,6,12,6,6,12,6,8,16,6,7,14,6,7.5,15,6,6,12,6,8,16,6,0,0,6,7,14 EXAMPLE1,60,3,3,3,3,5,5,3,4,4,3,3,3,3,6,6,3,4,4,3,3,3,3,4,4,3,8,8,3,0,0,3,4,4 EXAMPLE2,120,6,6,3,0,0,0,6,8,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 EXAMPLE3,60,6,6,6,6,8,8,6,6,6,6,6,6,0,0,0,0,0,0,6,8,8,6,6,6,0,0,0,0,0,0,0,10,10 EXAMPLE4,30,6,6,12,6,7,14,6,6,12,6,6,12,3,5.5,11,6,7.5,15,6,6,12,6,0,0,6,9,18,6,0,0,6,6.5,13 And so you can get a picture of how it looks in excel: What I need to do, is create multiple csv files for each instance in row 1, so L1, L2, L3, L4... And within that each csv file it needs to contain the title, r/t, needed So for L1 an example out put would look like: EXAMPLEfoo,60,6 EXAMPLEbar,30,6 EXAMPLE1,60,3 EXAMPLE2,120,6 EXAMPLE3,60,6 EXAMPLE4,30,6 And for L2: EXAMPLEfoo,60,0 EXAMPLEbar,30,6 EXAMPLE1,60,3 EXAMPLE2,120,0 EXAMPLE3,60,6 EXAMPLE4,30,6 And so on. I have tried playing around with sed and awk and hit google but I have found nothing that really solves the issue. I'd imagine perl would be particular suited to this or maybe python, so I would be more than happy to accept suggestions from users. So, any suggestions? Thanks in advance.

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  • How do I fix my Ruby installation

    - by Robin Fisher
    Hi all, I rather cleverly (or not in hindsight) installed RVM, which kept hanging whilst compiling Rubies. I have removed the .rvm directory but now my system has reverted to Ruby 1.8.7 i.e. when I type: ruby -v which ruby they both point to 1.8.7. How do I get the ruby command to point to my 1.9.1 installation, which is located in /usr/local/lib/ruby/1.9.1? I'm on OSX 10.6. Thanks Robin

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  • Sorting tab delimited text file based on multiple columns in natural way [duplicate]

    - by Vignesh
    This question already has an answer here: Sorting a column of CSV file resulting in 1123 appearing before 232 1 answer I am trying to sort a file based on all two columns Eg: chr19 1070019 1070020 chr16 869712 869713 chr1 1378131 1378132 chr12 189386 189387 chr4 254941 254942 chr16 1476500 1476501 chr2 1476810 1476811 chr19 313283 313284 chr17 595817 595818 chr18 656897 656898 chr19 1061829 1061830 I Tried sort -t $\t -k1,1 2,2 <filename> but doesn't work. I want the output to be sorted by first column and second column based on first column. I want to do a natural sort. Not lexical sorting. Eg: chr1 1378131 1378132 chr2 1476810 1476811 chr4 254941 254942 chr12 189386 189387 chr16 869712 869713 chr16 1476500 1476501 chr17 595817 595818 chr18 656897 656898 chr19 313283 313284 chr19 1061829 1061830 chr19 1070019 1070020 Anyone any idea?

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  • Inserting text in a file from a variable

    - by user754905
    I have a file that looks something like this: ABC DEF GHI I have a shell variable that looks something like this: var="MRD" What I want to do, is to make my file look like this: ABC MRD DEF GHI I was trying to do this: sed -i -e 's/ABC/&$var/g' text.txt but it only inserts $var instead of the value. I also tried this: sed -i -e 's/ABC/&"$var"/g' text.txt but that didn't work either. Any thoughts? Thanks!

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  • Running an array of processes

    - by User1
    I have the following array: procs=( 'one a b c' 'two d e f' 'three g h i' ) I try run these processes from a loop (using echo instead of eval so I can debug): for proc in ${procs[@]} do echo $proc done I get: one a b c two d e f three g h i I wanted: one a b c two d e f three g h i What went wrong?

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  • Using terminal to record/save a data stream

    - by jonhurlock
    I want to be able to save a data stream which i am returning using the curl command. I have tried using the cat command, and piping it the curl command, however i'm doing it wrong. The code im currently using is: cat > file.txt | curl http://datastream.com/data Any help would be appreciated.

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  • escape from a linux cli for loop

    - by aidan
    I'm doing something like this: for f in `find -iname '*.html'`; do scp $f remoteserver:$f; done; I've got through about 3 of the 1000 files and I've decided I want to abort the operation. CTRL+C only escapes the SCP login prompt and takes me to the next one, rather than escaping the for loop. Is there a better way than hitting CTRL+C 9997 times? Thanks!

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  • Force line-buffering of stdout when piping to tee

    - by houbysoft
    Usually, stdout is line-buffered. In other words, as long as your printf argument ends with a newline, you can expect the line to be printed instantly. This does not appear to hold when using a pipe to redirect to tee. I have a C++ program, a, that outputs strings, always \n-terminated, to stdout. When it is run by itself (./a), everything prints correctly and at the right time, as expected. However, if I pipe it to tee (./a | tee output.txt), it doesn't print anything until it quits, which defeats the purpose of using tee. I know that I could fix it by adding a fflush(stdout) after each printing operation in the C++ program. But is there a cleaner, easier way? Is there a command I can run, for example, that would force stdout to be line-buffered, even when using a pipe?

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  • I have an Errno 13 Permission denied with subprocess in python

    - by wDroter
    The line with the issue is ret=subprocess.call(shlex.split(cmd)) cmd = /usr/share/java -cp pig-hadoop-conf-Simpsons:lib/pig-0.8.1-cdh3u1-core.jar:lib/hadoop-core-0.20.2-cdh3u1.jar org.apache.pig.Main -param func=cat -param from =foo.txt -x mapreduce fsFunc.pig The error is. File "./run_pig.py", line 157, in process ret=subprocess.call(shlex.split(cmd)) File "/usr/lib/python2.7/subprocess.py", line 493, in call return Popen(*popenargs, **kwargs).wait() File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ errread, errwrite) File "/usr/lib/python2.7/subprocess.py", line 1249, in _execute_child raise child_exception OSError: [Errno 13] Permission denied Let me know if any more info is needed. Any help is appreciated. Thanks.

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  • Find directories not containing a specific directory

    - by Morgan ARR Allen
    Been searching around for a bit and cannot find a solution for this one. I guess I'm looking for a leaf-directory by name. In this example I'd like to get a list of directories call 'modules' that do NOT have a subdirectory called module. modules/package1/modules/spackage1 modules/package1/modules/spackage2 modules/package1/modules/spackage3/modules modules/package1/modules/spackage3/modules/spackage1 modules/package2/modules/ The list I desire would contain modules/package1/modules/spackage3/modules/ modules/package2/modules/ All the directories named module that do not have a subdirectory called module I started with trying something this with no luck find . -name modules \! -exec sh -c 'find -name modules' \; -exec works on exit code, okay lets pass the count as exit code find . -name modules -exec sh -c 'exit $(find {} -name modules|grep -n ""|tail -n1|cut -d: -f1)' \; This should take the count of each subdirectory called modules and exit with it. No such love.

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  • Tee a Pipe Asynchronously

    - by User1
    I would like to write the same information to two pipes, but I don't want to wait for the first pipe to read. Here's an example mkfifo one mkfifo two echo hi | tee one two & cat one & cat two & cat one does not start reading until cat two is run. Is there a way to make cat one run without waiting?

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  • Is there a reasonable way to attach new path to PATH in bashrc?

    - by Ripley
    Guys I constantly need to attach new paths to the PATH environment variable in .bashrc, like below: export PATH=/usr/local/bin:$PATH Then to make it take effect, I always do 'source ~/.bashrc' or '. ~/.bashrc', while I found one shortcoming of doing so which make me uncomfortable. If I keep doing so, the PATH will getting longer and longer with many duplicated entries, for example in the previous command, if I source it twice, the value of PATH will be PATH=/usr/local/bin:/usr/local/bin:/usr/local/bin:$PATH(<-the original path). Is there a more decent way to attach new path to PATH in bashrc without making it ugly?

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  • shell command to find a process id and attach to it?

    - by lallous
    Hello I want to attach to a running process using 'ddd', what I manually do is: # ps -ax | grep PROCESS_NAME Then I get a list and the pid, then I type: # ddd PROCESS_NAME THE_PID Is there is a way to type just one command directly? Remark: When I type ps -ax | grep PROCESS_NAME <- grep will match both the process and grep command line itself.

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  • run multiple programs in linux

    - by Betamoo
    I am trying to write a .sh file that runs many programs simultaneously I tried this prog1 prog2 But that runs prog1 then waits until prog1 ends and then starts prog2... So how can I run them in parallel? Thanks

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  • How can I get `find` to ignore .svn directories?

    - by John Kugelman
    I often use the find command to search through source code, delete files, whatever. Annoyingly, because Subversion stores duplicates of each file in its .svn/text-base/ directories my simple searches end up getting lots of duplicate results. For example, I want to recursively search for uint in multiple messages.h and messages.cpp files: # find -name 'messages.*' -exec grep -Iw uint {} + ./messages.cpp: Log::verbose << "Discarding out of date message: id " << uint(olderMessage.id) ./messages.cpp: Log::verbose << "Added to send queue: " << *message << ": id " << uint(preparedMessage->id) ./messages.cpp: Log::error << "Received message with invalid SHA-1 hash: id " << uint(incomingMessage.id) ./messages.cpp: Log::verbose << "Received " << *message << ": id " << uint(incomingMessage.id) ./messages.cpp: Log::verbose << "Sent message: id " << uint(preparedMessage->id) ./messages.cpp: Log::verbose << "Discarding unsent message: id " << uint(preparedMessage->id) ./messages.cpp: for (uint i = 0; i < 10 && !_stopThreads; ++i) { ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Discarding out of date message: id " << uint(olderMessage.id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Added to send queue: " << *message << ": id " << uint(preparedMessage->id) ./.svn/text-base/messages.cpp.svn-base: Log::error << "Received message with invalid SHA-1 hash: id " << uint(incomingMessage.id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Received " << *message << ": id " << uint(incomingMessage.id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Sent message: id " << uint(preparedMessage->id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Discarding unsent message: id " << uint(preparedMessage->id) ./.svn/text-base/messages.cpp.svn-base: for (uint i = 0; i < 10 && !_stopThreads; ++i) { ./virus/messages.cpp:void VsMessageProcessor::_progress(const string &fileName, uint scanCount) ./virus/messages.cpp:ProgressMessage::ProgressMessage(const string &fileName, uint scanCount) ./virus/messages.h: void _progress(const std::string &fileName, uint scanCount); ./virus/messages.h: ProgressMessage(const std::string &fileName, uint scanCount); ./virus/messages.h: uint _scanCount; ./virus/.svn/text-base/messages.cpp.svn-base:void VsMessageProcessor::_progress(const string &fileName, uint scanCount) ./virus/.svn/text-base/messages.cpp.svn-base:ProgressMessage::ProgressMessage(const string &fileName, uint scanCount) ./virus/.svn/text-base/messages.h.svn-base: void _progress(const std::string &fileName, uint scanCount); ./virus/.svn/text-base/messages.h.svn-base: ProgressMessage(const std::string &fileName, uint scanCount); ./virus/.svn/text-base/messages.h.svn-base: uint _scanCount; How can I tell find to ignore the .svn directories?

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  • Fastest way to sort files

    - by Werner
    Hi, I have a huge text file with lines like: -568.563626 159 33 -1109.660591 -1231.295129 4.381508 -541.181308 159 28 -1019.279615 -1059.115975 4.632301 -535.370812 155 29 -1033.071786 -1152.907805 4.420473 -533.547101 157 28 -1046.218277 -1063.389677 4.423696 What I want is to sort the file, depending on the 5th column, so I would get -568.563626 159 33 -1109.660591 -1231.295129 4.381508 -535.370812 155 29 -1033.071786 -1152.907805 4.420473 -533.547101 157 28 -1046.218277 -1063.389677 4.423696 -541.181308 159 28 -1019.279615 -1059.115975 4.632301 For this I use: for i in file.txt ; do sort -k5n $i ; done I wonder if this is the fastest or more efficient way Thanks

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  • Merge two text files at a specific location, sed or awk.

    - by S1syphus
    I have two text files, I want to place a text in the middle of another, I did some research and found information about adding single strings: I have a comment in the second text file called STUFFGOESHERE, so I tried: sed '/^STUFFGOESHERE/a file1.txt' file2.txt sed: 1: "/^STUFFGOESHERE/a long.txt": command a expects \ followed by text So I tried something different, trying to place the contents of the text based on a given line, but no luck. Any ideas?

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