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• mysql never releases memory

  - by Ishu

  I have a production server clocking about 4 million page views per month. The server has got 8GB of RAM and mysql acts as a database. I am facing problems in handling mysql to take this load. I need to restart mysql twice a day to handle this thing. The problem with mysql is that it starts with some particular occupation, the memory consumed by mysql keeps on increasing untill it reaches the maximum it can consume and then mysql stops responding slowly or does not respond at all, which freezes the server. All my tables are indexed properly and there are no long queries. I need some one to help on how to go about debugging what to do here. All my tables are myisam. I have tried configuring the parameters key_buffer etc but to no rescue. Any sort of help is greatly appreciated. Here are some parameters which may help. mysql --version mysql Ver 14.12 Distrib 5.0.77, for redhat-linux-gnu (i686) using readline 5.1 mysql> show variables; +---------------------------------+------------------------------------------------------------+ | Variable_name | Value | +---------------------------------+------------------------------------------------------------+ | auto_increment_increment | 1 | | auto_increment_offset | 1 | | automatic_sp_privileges | ON | | back_log | 50 | | basedir | /usr/ | | bdb_cache_size | 8384512 | | bdb_home | /var/lib/mysql/ | | bdb_log_buffer_size | 262144 | | bdb_logdir | | | bdb_max_lock | 10000 | | bdb_shared_data | OFF | | bdb_tmpdir | /tmp/ | | binlog_cache_size | 32768 | | bulk_insert_buffer_size | 8388608 | | character_set_client | latin1 | | character_set_connection | latin1 | | character_set_database | latin1 | | character_set_filesystem | binary | | character_set_results | latin1 | | character_set_server | latin1 | | character_set_system | utf8 | | character_sets_dir | /usr/share/mysql/charsets/ | | collation_connection | latin1_swedish_ci | | collation_database | latin1_swedish_ci | | collation_server | latin1_swedish_ci | | completion_type | 0 | | concurrent_insert | 1 | | connect_timeout | 10 | | datadir | /var/lib/mysql/ | | date_format | %Y-%m-%d | | datetime_format | %Y-%m-%d %H:%i:%s | | default_week_format | 0 | | delay_key_write | ON | | delayed_insert_limit | 100 | | delayed_insert_timeout | 300 | | delayed_queue_size | 1000 | | div_precision_increment | 4 | | keep_files_on_create | OFF | | engine_condition_pushdown | OFF | | expire_logs_days | 0 | | flush | OFF | | flush_time | 0 | | ft_boolean_syntax | + -><()~*:""&| | | ft_max_word_len | 84 | | ft_min_word_len | 4 | | ft_query_expansion_limit | 20 | | ft_stopword_file | (built-in) | | group_concat_max_len | 1024 | | have_archive | NO | | have_bdb | YES | | have_blackhole_engine | NO | | have_compress | YES | | have_crypt | YES | | have_csv | NO | | have_dynamic_loading | YES | | have_example_engine | NO | | have_federated_engine | NO | | have_geometry | YES | | have_innodb | YES | | have_isam | NO | | have_merge_engine | YES | | have_ndbcluster | NO | | have_openssl | DISABLED | | have_ssl | DISABLED | | have_query_cache | YES | | have_raid | NO | | have_rtree_keys | YES | | have_symlink | YES | | | init_connect | | | init_file | | | init_slave | | | interactive_timeout | 28800 | | join_buffer_size | 131072 | | key_buffer_size | 2621440000 | | key_cache_age_threshold | 300 | | key_cache_block_size | 1024 | | key_cache_division_limit | 100 | | language | /usr/share/mysql/english/ | | large_files_support | ON | | large_page_size | 0 | | large_pages | OFF | | lc_time_names | en_US | | license | GPL | | local_infile | ON | | locked_in_memory | OFF | | log | OFF | | log_bin | ON | | log_bin_trust_function_creators | OFF | | log_error | | | log_queries_not_using_indexes | OFF | | log_slave_updates | OFF | | log_slow_queries | ON | | log_warnings | 1 | | long_query_time | 8 | | low_priority_updates | OFF | | lower_case_file_system | OFF | | lower_case_table_names | 0 | | max_allowed_packet | 8388608 | | max_binlog_cache_size | 4294963200 | | max_binlog_size | 1073741824 | | max_connect_errors | 10 | | max_connections | 400 | | max_delayed_threads | 20 | | max_error_count | 64 | | max_heap_table_size | 16777216 | | max_insert_delayed_threads | 20 | | max_join_size | 4294967295 | | max_length_for_sort_data | 1024 | | max_prepared_stmt_count | 16382 | | max_relay_log_size | 0 | | max_seeks_for_key | 4294967295 | | max_sort_length | 1024 | | max_sp_recursion_depth | 0 | | max_tmp_tables | 32 | | max_user_connections | 0 | | max_write_lock_count | 4294967295 | | multi_range_count | 256 | | myisam_data_pointer_size | 6 | | myisam_max_sort_file_size | 2146435072 | | myisam_recover_options | OFF | | myisam_repair_threads | 1 | | myisam_sort_buffer_size | 16777216 | | myisam_stats_method | nulls_unequal | | net_buffer_length | 16384 | | net_read_timeout | 30 | | net_retry_count | 10 | | net_write_timeout | 60 | | new | OFF | | old_passwords | OFF | | open_files_limit | 2000 | | optimizer_prune_level | 1 | | optimizer_search_depth | 62 | | pid_file | /var/run/mysqld/mysqld.pid | | plugin_dir | | | port | 3306 | | preload_buffer_size | 32768 | | profiling | OFF | | profiling_history_size | 15 | | protocol_version | 10 | | query_alloc_block_size | 8192 | | query_cache_limit | 1048576 | | query_cache_min_res_unit | 4096 | | query_cache_size | 134217728 | | query_cache_type | ON | | query_cache_wlock_invalidate | OFF | | query_prealloc_size | 8192 | | range_alloc_block_size | 4096 | | read_buffer_size | 2097152 | | read_only | OFF | | read_rnd_buffer_size | 8388608 | | relay_log | | | relay_log_index | | | relay_log_info_file | relay-log.info | | relay_log_purge | ON | | relay_log_space_limit | 0 | | rpl_recovery_rank | 0 | | secure_auth | OFF | | secure_file_priv | | | server_id | 1 | | skip_external_locking | ON | | skip_networking | OFF | | skip_show_database | OFF | | slave_compressed_protocol | OFF | | slave_load_tmpdir | /tmp/ | | slave_net_timeout | 3600 | | slave_skip_errors | OFF | | slave_transaction_retries | 10 | | slow_launch_time | 2 | | socket | /var/lib/mysql/mysql.sock | | sort_buffer_size | 2097152 | | sql_big_selects | ON | | sql_mode | | | sql_notes | ON | | sql_warnings | OFF | | ssl_ca | | | ssl_capath | | | ssl_cert | | | ssl_cipher | | | ssl_key | | | storage_engine | MyISAM | | sync_binlog | 0 | | sync_frm | ON | | system_time_zone | CST | | table_cache | 256 | | table_lock_wait_timeout | 50 | | table_type | MyISAM | | thread_cache_size | 8 | | thread_stack | 196608 | | time_format | %H:%i:%s | | time_zone | SYSTEM | | timed_mutexes | OFF | | tmp_table_size | 33554432 | | tmpdir | /tmp/ | | transaction_alloc_block_size | 8192 | | transaction_prealloc_size | 4096 | | tx_isolation | REPEATABLE-READ | | updatable_views_with_limit | YES | | version | 5.0.77-log | | version_bdb | Sleepycat Software: Berkeley DB 4.1.24: (January 29, 2009) | | version_comment | Source distribution | | version_compile_machine | i686 | | version_compile_os | redhat-linux-gnu | | wait_timeout | 28800 | +---------------------------------+------------------------------------------------------------+

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• Cannot install Fast debugger in Netbeans 6.8 for Ruby 1.9

  - by Bragaadeesh

  Hi, I am using Netbeans 6.8 version and Ruby 1.9.1 installed on Windows XP. I tried to install the fast debugger and I am getting the following error. Building native extensions. This could take a while... ERROR: Error installing ruby-debug-ide: ERROR: Failed to build gem native extension. D:/Ruby19/bin/ruby.exe mkrf_conf.rb Building native extensions. This could take a while... Gem files will remain installed in D:/Ruby19/lib/ruby/gems/1.9.1/gems/ruby-debug-ide-0.4.9 for inspection. Results logged to D:/Ruby19/lib/ruby/gems/1.9.1/gems/ruby-debug-ide-0.4.9/ext/gem_make.out Have someone else faced this problem before. Please help. Thanks.

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• Having problems building Cairo on x64 CentOS

  - by Vnuk

  I've done this many times on 32 bit CentOS and everything went ok without a hitch. But now, on x64 CentOS, I can't get cairo to find pixman. Pixman 0.18.0 is installed in /usr/local/lib (which I believe is the usual location). Configure for Cairo 1.8.10 can't find it: checking for cairo's image surface backend feature... checking for pixman... no no checking whether cairo's image surface backend feature could be enabled... no (requires pixman-1 >= 0.12.0 http://cairographics.org/releases/) configure: error: mandatory image surface backend feature could not be enabled I've tried setting environment variable pixman_LIBS=/usr/local/lib but wihtout any luck. Any idea what is going wrong? Is it possible for me to see where is cairo's configure looking for pixman? Search paths or something like that?

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• generateUrl problem

  - by Daniel Hertz

  I am trying to generate a url but I keep getting a strange warning even though it works. I am making an api xml page and I use the following call in the controller: public function executeList(sfWebRequest $request) { $this->users = array(); foreach($this->getRoute()->getObjects() as $user) { $this->users[$this->generateUrl('user_show', $user, true)] = $user->asArray($request->getHost()); } } The user_show route is as follows: # api urls user_show: url: /user/:nickname param: { module: user, action: show } And the xml outputs as follows: <br /> <b>Warning</b>: array_diff_key() [<a href='function.array-diff-key'>function.array-diff-key</a>]: Argument #1 is not an array in <b>/opt/local/lib/php/symfony/routing/sfRoute.class.php</b> on line <b>253</b><br /> <br /> <b>Warning</b>: array_diff_key() [<a href='function.array-diff-key'>function.array-diff-key</a>]: Argument #1 is not an array in <b>/opt/local/lib/php/symfony/routing/sfRoute.class.php</b> on line <b>253</b><br /> <br /> <b>Warning</b>: array_diff_key() [<a href='function.array-diff-key'>function.array-diff-key</a>]: Argument #1 is not an array in <b>/opt/local/lib/php/symfony/routing/sfRoute.class.php</b> on line <b>253</b><br /> <?xml version="1.0" encoding="utf-8"?> <users> <user url="http://krowdd.dev/frontend_dev.php/user/danny"> <name>Danny tz</name> <nickname>danny</nickname> <email>[email protected]</email> <image></image> </user> <user url="http://krowdd.dev/frontend_dev.php/user/adrian"> <name>Adrian Sooian</name> <nickname>adrian</nickname> </user> </users> So it outputs the correct xml but I do not know why it throws thows warning when calling the generateurl method. Thanks!

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• JPA 2.0, hiberante 3.5, jars & persistence.xml location

  - by phmr

  I'm building a desktop application using hibernate 3.5 & JPA 2.0. I have 2 jars, the lib, which defines every entity and DAO, packages looks like this : org.my.package.models org.my.package.models.dao org.my.package.models.utils In org.my.package.utils I defined my hibernate utility class for getting EM & EMF instances, which means the lib is bound to a Persistence Unit name but that's not a problem for now (anyway you can recommend me a better way to manage that) the second jars is built as follow: org.my.package.app META-INF is defined on the root of the project which means in my jar I can find this directories directly in the root: META-INF/ META-INF/persistence.xml org/ org/my/ ... org/my/package/app/Main.class META-INF/ When I run the app, hibernate doesn't managed to find persistence.xml it throws an exception something like "package or class for PersistenceUnitName not found". I googled a bit about the problem but I can't get the source code organisation right. Any help ?

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• Notification CeSetUserNotificationEx with custom sound

  - by inTagger

  Hail all! I want to display notification and play custom sound on my Windows Mobile 5/6 device. I have tried something like that, but my custom sound does not play, though message is displayed with standart sound. If i edit Wave key in [HKEY_CURRENT_USER\ControlPanel\Notifications{15F11F90-8A5F-454c-89FC-BA9B7AAB0CAD}] to sound file i need then it plays okay. But why there are flag NotificationAction.Sound and property UserNotification.Sound? It doesn't work. Also Vibration and Led don't work, if i use such flags. (You can obtain full project sources from http://dl.dropbox.com/u/1758206/Code/Thunder.zip) var trigger = new UserNotificationTrigger { StartTime = DateTime.Now + TimeSpan.FromSeconds(1), Type = NotificationType.ClassicTime }; var userNotification = new UserNotification { Sound = @"\Windows\Alarm1.wma", Text = "Hail from Penza, Russia!", Action = NotificationAction.Dialog | NotificationAction.Sound, Title = string.Empty, MaxSound = 16384 }; NotificationTools.SetUserNotification(0, trigger, userNotification); UserNotificationTrigger.cs: using System; using System.Runtime.InteropServices; namespace Thunder.Lib.ThunderMethod1 { /// <summary> /// Specifies the type of notification. /// </summary> public enum NotificationType { /// <summary> /// Equivalent to using the SetUserNotification function. /// The standard command line is supplied. /// </summary> ClassicTime = 4, /// <summary> /// System event notification. /// </summary> Event = 1, /// <summary> /// Time-based notification that is active for the time period between StartTime and EndTime. /// </summary> Period = 3, /// <summary> /// Time-based notification. /// </summary> Time = 2 } /// <summary> /// System Event Flags /// </summary> public enum NotificationEvent { None, TimeChange, SyncEnd, OnACPower, OffACPower, NetConnect, NetDisconnect, DeviceChange, IRDiscovered, RS232Detected, RestoreEnd, Wakeup, TimeZoneChange, MachineNameChange, RndisFNDetected, InternetProxyChange } /// <summary> /// Defines what event activates a notification. /// </summary> [StructLayout(LayoutKind.Sequential)] public class UserNotificationTrigger { internal int dwSize = 52; private int dwType; private int dwEvent; [MarshalAs(UnmanagedType.LPWStr)] private string lpszApplication = string.Empty; [MarshalAs(UnmanagedType.LPWStr)] private string lpszArguments; internal SYSTEMTIME stStartTime; internal SYSTEMTIME stEndTime; /// <summary> /// Specifies the type of notification. /// </summary> public NotificationType Type { get { return (NotificationType) dwType; } set { dwType = (int) value; } } /// <summary> /// Specifies the type of event should Type = Event. /// </summary> public NotificationEvent Event { get { return (NotificationEvent) dwEvent; } set { dwEvent = (int) value; } } /// <summary> /// Name of the application to execute. /// </summary> public string Application { get { return lpszApplication; } set { lpszApplication = value; } } /// <summary> /// Command line (without the application name). /// </summary> public string Arguments { get { return lpszArguments; } set { lpszArguments = value; } } /// <summary> /// Specifies the beginning of the notification period. /// </summary> public DateTime StartTime { get { return stStartTime.ToDateTime(); } set { stStartTime = SYSTEMTIME.FromDateTime(value); } } /// <summary> /// Specifies the end of the notification period. /// </summary> public DateTime EndTime { get { return stEndTime.ToDateTime(); } set { stEndTime = SYSTEMTIME.FromDateTime(value); } } } } UserNotification.cs: using System.Runtime.InteropServices; namespace Thunder.Lib.ThunderMethod1 { /// <summary> /// Contains information used for a user notification. /// </summary> [StructLayout(LayoutKind.Sequential)] public class UserNotification { private int ActionFlags; [MarshalAs(UnmanagedType.LPWStr)] private string pwszDialogTitle; [MarshalAs(UnmanagedType.LPWStr)] private string pwszDialogText; [MarshalAs(UnmanagedType.LPWStr)] private string pwszSound; private int nMaxSound; private int dwReserved; /// <summary> /// Any combination of the <see cref="T:Thunder.Lib.NotificationAction" /> members. /// </summary> /// <value>Flags which specifies the action(s) to be taken when the notification is triggered.</value> /// <remarks>Flags not valid on a given hardware platform will be ignored.</remarks> public NotificationAction Action { get { return (NotificationAction) ActionFlags; } set { ActionFlags = (int) value; } } /// <summary> /// Required if NotificationAction.Dialog is set, ignored otherwise /// </summary> public string Title { get { return pwszDialogTitle; } set { pwszDialogTitle = value; } } /// <summary> /// Required if NotificationAction.Dialog is set, ignored otherwise. /// </summary> public string Text { get { return pwszDialogText; } set { pwszDialogText = value; } } /// <summary> /// Sound string as supplied to PlaySound. /// </summary> public string Sound { get { return pwszSound; } set { pwszSound = value; } } public int MaxSound { get { return nMaxSound; } set { nMaxSound = value; } } } } NativeMethods.cs: using System; using System.Runtime.InteropServices; namespace Thunder.Lib.ThunderMethod1 { [StructLayout(LayoutKind.Sequential)] public struct SYSTEMTIME { public short wYear; public short wMonth; public short wDayOfWeek; public short wDay; public short wHour; public short wMinute; public short wSecond; public short wMillisecond; public static SYSTEMTIME FromDateTime(DateTime dt) { return new SYSTEMTIME { wYear = (short) dt.Year, wMonth = (short) dt.Month, wDayOfWeek = (short) dt.DayOfWeek, wDay = (short) dt.Day, wHour = (short) dt.Hour, wMinute = (short) dt.Minute, wSecond = (short) dt.Second, wMillisecond = (short) dt.Millisecond }; } public DateTime ToDateTime() { if ((((wYear == 0) && (wMonth == 0)) && ((wDay == 0) && (wHour == 0))) && ((wMinute == 0) && (wSecond == 0))) return DateTime.MinValue; return new DateTime(wYear, wMonth, wDay, wHour, wMinute, wSecond, wMillisecond); } } /// <summary> /// Specifies the action to take when a notification event occurs. /// </summary> [Flags] public enum NotificationAction { /// <summary> /// Displays the user notification dialog box. /// </summary> Dialog = 4, /// <summary> /// Flashes the LED. /// </summary> Led = 1, /// <summary> /// Dialog box z-order flag. /// Set if the notification dialog box should come up behind the password. /// </summary> Private = 32, /// <summary> /// Repeats the sound for 10–15 seconds. /// </summary> Repeat = 16, /// <summary> /// Plays the sound specified. /// </summary> Sound = 8, /// <summary> /// Vibrates the device. /// </summary> Vibrate = 2 } internal class NativeMethods { [DllImport("coredll.dll", CallingConvention = CallingConvention.Winapi, CharSet = CharSet.Unicode, SetLastError = true)] internal static extern int CeSetUserNotificationEx(int hNotification, UserNotificationTrigger lpTrigger, UserNotification lpUserNotification); } } NotificationTools.cs: using System.ComponentModel; using System.Runtime.InteropServices; namespace Thunder.Lib.ThunderMethod1 { public static class NotificationTools { /// <summary> /// This function modifies an existing user notification. /// </summary> /// <param name="handle">Handle of the Notification to be modified</param> /// <param name="trigger">A UserNotificationTrigger that defines what event activates a notification.</param> /// <param name="notification">A UserNotification that defines how the system should respond when a notification occurs.</param> /// <returns>Handle to the notification event if successful.</returns> public static int SetUserNotification(int handle, UserNotificationTrigger trigger, UserNotification notification) { int num = NativeMethods.CeSetUserNotificationEx(handle, trigger, notification); if (num == 0) throw new Win32Exception(Marshal.GetLastWin32Error(), "Error setting UserNotification"); return num; } } }

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• Can I use swank-clojure with the clojure 1.2 master branch?

  - by Rob

  I'm happily using swank-clojure, installed via elpa. But I'd like to do some work with deftype, defprotocol, etc., which aren't aren't available in clojure 1.1. To use my own class paths, I'm using the excellent suggestion by Rick Moynihan in the stackoverflow question about setting custom classpaths, which was to set up a script like: #!/bin/bash java -server -cp "./lib/*":./src clojure.main -e "(do (require 'swank.swank) (swank.swank/start-repl))" And that works swimmingly if the clojure jar file in lib is 1.1, but with 1.2, it blows up: Exception in thread "main" java.lang.NoSuchMethodError: clojure.lang.RestFn.<init>(I)V (macroexpand.clj:1) at clojure.lang.Compiler.eval(Compiler.java:5274) at clojure.lang.Compiler.load(Compiler.java:5663) at clojure.lang.RT.loadResourceScript(RT.java:330) at clojure.lang.RT.loadResourceScript(RT.java:321) at clojure.lang.RT.load(RT.java:399) at clojure.lang.RT.load(RT.java:371) at clojure.core$load__5663$fn__5671.invoke(core.clj:4255) at clojure.core$load__5663.doInvoke(core.clj:4254) at clojure.lang.RestFn.invoke(RestFn.java:409) ...and many, many more So is there some magical incantation to make this work, or is clojure 1.2 compatibility not there yet?

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• importing pywiiuse to test out

  - by Patrick Burton

  This is probably a simple problem. But I downloaded the pywiiuse library from here and I also downloaded the examples. However when I try to run one of the examples I end up with import issues. I'm not certain I have everything configured properly to run. One error I receive when trying to run example.py: Press 1&2 Traceback (most recent call last): File "example.py", line 73, in <module> wiimotes = wiiuse.init(nmotes) File "/home/thed0ctor/Descargas/wiiuse-0.12/wiiuse/__init__.py", line 309, in init dll = ctypes.cdll.LoadLibrary('libwiiuse.so') File "/usr/lib/python2.7/ctypes/__init__.py", line 431, in LoadLibrary return self._dlltype(name) File "/usr/lib/python2.7/ctypes/__init__.py", line 353, in __init__ self._handle = _dlopen(self._name, mode) OSError: libwiiuse.so: cannot open shared object file: No such file or directory I'm really just starting out with this library and don't really see any documentation on how to configure pywiiuse so any help is much appreciated.

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• Having Problems Getting FreeTTS and JSAPI Working

  - by Travis

  I have a simple project idea based off of FreeTTS and the JSAPI (Java Speech API) I've downloaded and unpacked FreeTTS and run their build script. Then tried compiling my code linking in the lib directory into the class path like this: javac -cp /home/travis/Desktop/freetts-1.2/lib HelloUnleashedReader.java Which then compiles to java bytecode just fine. However when I run: java HelloUnleashedReader I get the following error: Exception in thread "main" java.lang.NoClassDefFoundError: javax/speech/EngineModeDesc Any help on this issue would be greatly appreciated as there are many sites around the net discussing problems with getting it to work but not many that discuss their solution.

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• OpenCV 2.0 and Python

  - by Jive Dadson

  I cannot get the example Python programs to run. When executing the Python command "from opencv import cv" I get the message "ImportError: No module named _cv". There is a stale _cv.pyd in the site-packages directory, but no _cv.py anywhere. See step 5 below. MS Windows XP, VC++ 2008, Python 2.6, OpenCV 2.0 Here's what I have done. Downloaded and ran the MS Windows installer for OpenCV2.0. Downloaded and installed CMake Downloaded and installed SWIG Ran CMake. After unchecking "ENABLE_OPENMP" in the CMake GUI, I was able to build OpenCV using INSTALL.vcproj and BUILD_ALL.vcproj. I do not know what the difference is, so I built everything under both of those project files. The C example programs run fine. Copied contents of OpenCV2.0/Python2.6/lib/site-packages to my installed Python2.6/lib/site-packages directory. I notice that it contains an old _cv.pyd and an old libcv.dll.a.

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• How to build gnu `libiconv` on & for windows?

  - by claws

  Hello, I want to build a static library (*.LIB file) GNU libiconv on windows to be used with other libraries in Visual C++. Other libraries I'm using are built with "MultiThreaded DLL" (/MD) Runtime option. So, I need to build libiconv with the same option. Problem is the libiconv uses GNU build system and I want to compile with /MD option. You can see the source structure of libiconv here: http://cvs.savannah.gnu.org/viewvc/libiconv/?root=libiconv Actually, Mr. Zlatkovic maintains the windows port of GNU libiconv for libxml2 you can see them here: ftp://xmlsoft.org/libxml2/win32/iconv-1.9.2.win32.zip ftp://xmlsoft.org/libxml2/win32/iconv-1.9.2.win32.zip I cannot use his port. I need to build from the latest version of libiconv-1.13. I wonder how this guy has ported it? Can some one please tell me how to build *.lib from this and compile it using MSVC?

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• help installing odfWeave

  - by Andreas

  This is not a programming question per se - but I hope someone can help: I can't install odfWeave - it looks like the problem is with the package XML - which i can't install either. checking for xml2-config... no Cannot find xml2-config ERROR: configuration failed for package ‘XML’ * removing ‘/home/andreas/R/i486-pc-linux-gnu-library/2.10/XML’ * installing source package ‘odfWeave’ ... ** R ** inst ** preparing package for lazy loading Warning in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : there is no package called 'XML' Error : package 'XML' could not be loaded ERROR: lazy loading failed for package ‘odfWeave’ * removing ‘/home/andreas/R/i486-pc-linux-gnu-library/2.10/odfWeave’ Any help much appreciated System: ubuntu 9.04

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• How to use numpy with OpenBLAS instead of Atlas in Ubuntu?

  - by pierotiste

  I have looked for an easy way to install/compile Numpy with OpenBLAS but didn't find an easy answer. All the documentation I have seen takes too much knowledge as granted for someone like me who is not used to compile software. There are two packages in Ubuntu related to OpenBLAS : libopenblas-base and libopenblas-dev. Once they are installed, what should I do to install Numpy again with them? Thanks! Note that when these OpenBLAS packages are installed, Numpy doesn't work anymore: it can't be imported: ImportError: /usr/lib/liblapack.so.3gf: undefined symbol: ATL_chemv. This was noticed here already. Answer to the question: Run sudo update-alternatives --all and set liblapack.so.3gf to /usr/lib/lapack/liblapack.so.3gf

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• Puppet's automatically generated certificates failing

  - by gparent

  I am running a default configuration of Puppet on Debian Squeeze 6.0.4. The server's FQDN is master.example.com. The client's FQDN is client.example.com. I am able to contact the puppet master and send a CSR. I sign it using puppetca -sa but the client will still not connect. Date of both machines is within 2 seconds of Tue Apr 3 20:59:00 UTC 2012 as I wrote this sentence. This is what appears in /var/log/syslog: Apr 3 17:03:52 localhost puppet-agent[18653]: Reopening log files Apr 3 17:03:52 localhost puppet-agent[18653]: Starting Puppet client version 2.6.2 Apr 3 17:03:53 localhost puppet-agent[18653]: Could not retrieve catalog from remote server: SSL_connect returned=1 errno=0 state=SSLv3 read server certificate B: certificate verify failed Apr 3 17:03:53 localhost puppet-agent[18653]: Using cached catalog Apr 3 17:03:53 localhost puppet-agent[18653]: Could not retrieve catalog; skipping run Here is some interesting output: OpenSSL client test: client:~# openssl s_client -host master.example.com -port 8140 -cert /var/lib/puppet/ssl/certs/client.example.com.pem -key /var/lib/puppet/ssl/private_keys/client.example.com.pem -CAfile /var/lib/puppet/ssl/certs/ca.pem CONNECTED(00000003) depth=1 /CN=Puppet CA: master.example.com verify return:1 depth=0 /CN=master.example.com verify error:num=7:certificate signature failure verify return:1 depth=0 /CN=master.example.com verify return:1 18509:error:1409441B:SSL routines:SSL3_READ_BYTES:tlsv1 alert decrypt error:s3_pkt.c:1102:SSL alert number 51 18509:error:140790E5:SSL routines:SSL23_WRITE:ssl handshake failure:s23_lib.c:188: client:~# master's certificate: root@master:/etc/puppet# openssl x509 -text -noout -in /etc/puppet/ssl/certs/master.example.com.pem Certificate: Data: Version: 3 (0x2) Serial Number: 2 (0x2) Signature Algorithm: sha1WithRSAEncryption Issuer: CN=Puppet CA: master.example.com Validity Not Before: Apr 2 20:01:28 2012 GMT Not After : Apr 2 20:01:28 2017 GMT Subject: CN=master.example.com Subject Public Key Info: Public Key Algorithm: rsaEncryption RSA Public Key: (1024 bit) Modulus (1024 bit): 00:a9:c1:f9:4c:cd:0f:68:84:7b:f4:93:16:20:44: 7a:2b:05:8e:57:31:05:8e:9c:c8:08:68:73:71:39: c1:86:6a:59:93:6e:53:aa:43:11:83:5b:2d:8c:7d: 54:05:65:c1:e1:0e:94:4a:f0:86:58:c3:3d:4f:f3: 7d:bd:8e:29:58:a6:36:f4:3e:b2:61:ec:53:b5:38: 8e:84:ac:5f:a3:e3:8c:39:bd:cf:4f:3c:ff:a9:65: 09:66:3c:ba:10:14:69:d5:07:57:06:28:02:37:be: 03:82:fb:90:8b:7d:b3:a5:33:7b:9b:3a:42:51:12: b3:ac:dd:d5:58:69:a9:8a:ed Exponent: 65537 (0x10001) X509v3 extensions: X509v3 Basic Constraints: critical CA:FALSE Netscape Comment: Puppet Ruby/OpenSSL Internal Certificate X509v3 Key Usage: critical Digital Signature, Key Encipherment X509v3 Subject Key Identifier: 8C:2F:14:84:B6:A1:B5:0C:11:52:36:AB:E5:3F:F2:B9:B3:25:F3:1C X509v3 Extended Key Usage: critical TLS Web Server Authentication, TLS Web Client Authentication Signature Algorithm: sha1WithRSAEncryption 7b:2c:4f:c2:76:38:ab:03:7f:c6:54:d9:78:1d:ab:6c:45:ab: 47:02:c7:fd:45:4e:ab:b5:b6:d9:a7:df:44:72:55:0c:a5:d0: 86:58:14:ae:5f:6f:ea:87:4d:78:e4:39:4d:20:7e:3d:6d:e9: e2:5e:d7:c9:3c:27:43:a4:29:44:85:a1:63:df:2f:55:a9:6a: 72:46:d8:fb:c7:cc:ca:43:e7:e1:2c:fe:55:2a:0d:17:76:d4: e5:49:8b:85:9f:fa:0e:f6:cc:e8:28:3e:8b:47:b0:e1:02:f0: 3d:73:3e:99:65:3b:91:32:c5:ce:e4:86:21:b2:e0:b4:15:b5: 22:63 root@master:/etc/puppet# CA's certificate: root@master:/etc/puppet# openssl x509 -text -noout -in /etc/puppet/ssl/certs/ca.pem Certificate: Data: Version: 3 (0x2) Serial Number: 1 (0x1) Signature Algorithm: sha1WithRSAEncryption Issuer: CN=Puppet CA: master.example.com Validity Not Before: Apr 2 20:01:05 2012 GMT Not After : Apr 2 20:01:05 2017 GMT Subject: CN=Puppet CA: master.example.com Subject Public Key Info: Public Key Algorithm: rsaEncryption RSA Public Key: (1024 bit) Modulus (1024 bit): 00:b5:2c:3e:26:a3:ae:43:b8:ed:1e:ef:4d:a1:1e: 82:77:78:c2:98:3f:e2:e0:05:57:f0:8d:80:09:36: 62:be:6c:1a:21:43:59:1d:e9:b9:4d:e0:9c:fa:09: aa:12:a1:82:58:fc:47:31:ed:ad:ad:73:01:26:97: ef:d2:d6:41:6b:85:3b:af:70:00:b9:63:e9:1b:c3: ce:57:6d:95:0e:a6:d2:64:bd:1f:2c:1f:5c:26:8e: 02:fd:d3:28:9e:e9:8f:bc:46:bb:dd:25:db:39:57: 81:ed:e5:c8:1f:3d:ca:39:cf:e7:f3:63:75:f6:15: 1f:d4:71:56:ed:84:50:fb:5d Exponent: 65537 (0x10001) X509v3 extensions: X509v3 Basic Constraints: critical CA:TRUE Netscape Comment: Puppet Ruby/OpenSSL Internal Certificate X509v3 Key Usage: critical Certificate Sign, CRL Sign X509v3 Subject Key Identifier: 8C:2F:14:84:B6:A1:B5:0C:11:52:36:AB:E5:3F:F2:B9:B3:25:F3:1C Signature Algorithm: sha1WithRSAEncryption 1d:cd:c6:65:32:42:a5:01:62:46:87:10:da:74:7e:8b:c8:c9: 86:32:9e:c2:2e:c1:fd:00:79:f0:ef:d8:73:dd:7e:1b:1a:3f: cc:64:da:a3:38:ad:49:4e:c8:4d:e3:09:ba:bc:66:f2:6f:63: 9a:48:19:2d:27:5b:1d:2a:69:bf:4f:f4:e0:67:5e:66:84:30: e5:85:f4:49:6e:d0:92:ae:66:77:50:cf:45:c0:29:b2:64:87: 12:09:d3:10:4d:91:b6:f3:63:c4:26:b3:fa:94:2b:96:18:1f: 9b:a9:53:74:de:9c:73:a4:3a:8d:bf:fa:9c:c0:42:9d:78:49: 4d:70 root@master:/etc/puppet# Client's certificate: client:~# openssl x509 -text -noout -in /var/lib/puppet/ssl/certs/client.example.com.pem Certificate: Data: Version: 3 (0x2) Serial Number: 3 (0x3) Signature Algorithm: sha1WithRSAEncryption Issuer: CN=Puppet CA: master.example.com Validity Not Before: Apr 2 20:01:36 2012 GMT Not After : Apr 2 20:01:36 2017 GMT Subject: CN=client.example.com Subject Public Key Info: Public Key Algorithm: rsaEncryption RSA Public Key: (1024 bit) Modulus (1024 bit): 00:ae:88:6d:9b:e3:b1:fc:47:07:d6:bf:ea:53:d1: 14:14:9b:35:e6:70:43:e0:58:35:76:ac:c5:9d:86: 02:fd:77:28:fc:93:34:65:9d:dd:0b:ea:21:14:4d: 8a:95:2e:28:c9:a5:8d:a2:2c:0e:1c:a0:4c:fa:03: e5:aa:d3:97:98:05:59:3c:82:a9:7c:0e:e9:df:fd: 48:81:dc:33:dc:88:e9:09:e4:19:d6:e4:7b:92:33: 31:73:e4:f2:9c:42:75:b2:e1:9f:d9:49:8c:a7:eb: fa:7d:cb:62:22:90:1c:37:3a:40:95:a7:a0:3b:ad: 8e:12:7c:6e:ad:04:94:ed:47 Exponent: 65537 (0x10001) X509v3 extensions: X509v3 Basic Constraints: critical CA:FALSE Netscape Comment: Puppet Ruby/OpenSSL Internal Certificate X509v3 Key Usage: critical Digital Signature, Key Encipherment X509v3 Subject Key Identifier: 8C:2F:14:84:B6:A1:B5:0C:11:52:36:AB:E5:3F:F2:B9:B3:25:F3:1C X509v3 Extended Key Usage: critical TLS Web Server Authentication, TLS Web Client Authentication Signature Algorithm: sha1WithRSAEncryption 33:1f:ec:3c:91:5a:eb:c6:03:5f:a1:58:60:c3:41:ed:1f:fe: cb:b2:40:11:63:4d:ba:18:8a:8b:62:ba:ab:61:f5:a0:6c:0e: 8a:20:56:7b:10:a1:f9:1d:51:49:af:70:3a:05:f9:27:4a:25: d4:e6:88:26:f7:26:e0:20:30:2a:20:1d:c4:d3:26:f1:99:cf: 47:2e:73:90:bd:9c:88:bf:67:9e:dd:7c:0e:3a:86:6b:0b:8d: 39:0f:db:66:c0:b6:20:c3:34:84:0e:d8:3b:fc:1c:a8:6c:6c: b1:19:76:65:e6:22:3c:bf:ff:1c:74:bb:62:a0:46:02:95:fa: 83:41 client:~#

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• Ruby on rails - Radrails IDE - mysql issues.

  - by ThomasReggi

  I have been trying to get Ruby on Rails to migrate a database for the good part of today, the problems all seem to result with this issue, can someone please help! If its a radrails specific problem I guess Ill take this to their forums. Something is telling me this is an easy fix. >rake db:migrate (in C:/Users/Thomas/My Documents/Aptana RadRails Workspace/rp) !!! The bundled mysql.rb driver has been removed from Rails 2.2. Please install the mysql gem and try again: gem install mysql. rake aborted! 126: The specified module could not be found. - C:/Ruby/lib/ruby/gems/1.8/gems/mysql-2.8.1-x86-mswin32/lib/1.8/mysql_api.so (See full trace by running task with --trace)

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• apache virtual host to work with django

  - by khelll

  My project is under: /home/projects/testing and I'm adding this to the buttom of my /etc/httpd/conf/httpd.conf file on Centos machine, but that is not working, <Location "/testing/"> SetHandler python-program PythonHandler django.core.handlers.modpython SetEnv DJANGO_SETTINGS_MODULE testing.settings PythonOption django.root /testing PythonDebug On PythonPath "['/home/projects/'] + sys.path" </Location> but when requesting http://localhost/testing/jobs for example, I get: Mod_python error: "PythonHandler django.core.handlers.modpython" Traceback (most recent call last): File "/usr/lib/python2.4/site-packages/mod_python/apache.py", line 299, in HandlerDispatch result = object(req) ............. File "/usr/lib/python2.4/site-packages/Django-1.1.1-py2.4.egg/django/conf/__init__.py", line 75, in __init__ raise ImportError, "Could not import settings '%s' (Is it on sys.path? Does it have syntax errors?): %s" % (self.SETTINGS_MODULE, e) ImportError: Could not import settings 'testing.settings' (Is it on sys.path? Does it have syntax errors?): No module named testing.settings

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• How do I use test Perl modules from test Perl scripts?

  - by DVK

  If my Perl code has a production code location and "test" code location (e.g. production Perl code us in /usr/code/scripts, test Perl code is in /usr/code/test/scripts; production Perl libraries are in /usr/code/lib/perl and test versions of those libraries are in /usr/code/test/lib/perl, is there an easy way for me to achieve such a setup? The exact requirements are: The code must be THE SAME in production and test location. To clarify, to promote any code (library or script) from test to production, the ONLY thing which needs to happen is literally issuing cp command from test to prod location - both the file name AND file contents must remain identical. Test versions of scripts must call other test scripts and test libraries (if exist) or production libraries (if test libraries do not exist) The code paths must be the same between test and production with the exception of base directory (/usr/code/ vs /usr/code/test/) I will present how we solved the problem as an answer to this question, but I'd like to know if there's a better way.

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• Eclipse c++ with mingw comiler cant build boost regex example, can find .a library files

  - by Kim

  Hi, I'm trying to build the boost regex example in eclipse using mingw on vista. I built boost ok with mingw as there are library files XXXX.a. I could build/compile the first boost example that doesnt require any of the compiled boost libraries. When I compile the regex example I get a linker error saying it cant find the library file. I have tried various libray file names eg leave off the .a extension, leave off the lib prefix etc. Now the interesting thing is that if I leave off the library extension and rename the library file to XXX.lib it works and runs ok. So why cant it read the .a library file? It must be my setup somewhere but I dont know where or what to set. From what I read everyone is ok linking the .a file except me :( Thanks in advance, Kim

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• how to setup the sphinx with netbeans

  - by Pradeep

  i have successfully configured sphinx4 with eclipse. for that these steps i have used. copy my java and config files to SRC folder all the necessary jar files (in the lib). the lib folder added to the root of the project build those jar files (jsapi files too) change the configuration file and give the proper path test the java file but in Netbeans i really dont understand how to do the proper steps. can someone help me. the jar files should be added to "Libraries" rite. then after adding them how to build them. in the netbeans it dont show a SRC folder. so all the java files and configuration files should go to Source Packages folder rite. can someone help me with this. please

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• django auth : strange error with authenticate()

  - by Rohit

  I am using authenticate() to authenticating users manually. Using admin interface I can see that there is no 'last_login' attribute for Users Debug traceback is : Environment: Request Method: GET Request URL: https://localhost/login/ Django Version: 1.1.1 Python Version: 2.6.5 Installed Applications: ['django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'django.contrib.admin', 'mobius.polls'] Installed Middleware: ('django.middleware.common.CommonMiddleware', 'django.contrib.sessions.middleware.SessionMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware') Traceback: File "/usr/lib/pymodules/python2.6/django/core/handlers/base.py" in get_response 92. response = callback(request, *callback_args, **callback_kwargs) File "/usr/lib/pymodules/python2.6/django/contrib/auth/__init__.py" in login 55. user.last_login = datetime.datetime.now() Exception Type: AttributeError at /login/ Exception Value: 'unicode' object has no attribute 'last_login' I cant figure out, why is there this discrepancy. Any kind of help would be appreciated. Thanks in advance!

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• How do I use logback-access in combination with Tomcat 5.5?

  - by mcduke

  I've got several Web apps running on a Tomcat 5.5 server, and I'm working on improving/updating the overall logging system used throughout the system. I already had some success with logback-classic. However, when I try to use logback-access (i.e. access the lbAccessStatus servlet), I get this exception: exception javax.servlet.ServletException: Wrapper cannot find servlet class ch.qos.logback.access.ViewStatusMessagesServlet or a class it depends on org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:433) ... root cause java.lang.ClassNotFoundException: ch.qos.logback.access.ViewStatusMessagesServlet org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1386) ... I have everything set up according to the docs: common/lib: logback-classic-0.9.15.jar logback-core-0.9.15.jar server/lib: logback-access-0.9.15.jar Moving around the libraries doesn't seem to help. logback-classic seems to work fine, it's just logback-access that causes problems.

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• where to find a windsor controller factory for mvc 2 ? There is no mvccontrib.castle.dll anymore o_O

  - by Omu

  I was using WindsorControllerFactory from mvccontrib.castle lib until now, after i migrated to mvc 2 it doesn't work anymore, I've downloaded the latest mvccontrib release and no factories in there

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• Problems with mod_Rewrite

  - by Giorgi

  Hello, Originally I had following .htaccess file: php_value display_errors 1 php_value error_reporting 7 AddDefaultCharset utf-8 Options -Indexes <Files ~ ".*\.(info|tpl)$"> Order allow,deny Deny from all </Files> RewriteEngine On RewriteBase / RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_FILENAME} !-d RewriteRule ^(.*)$ /index.php/$1 [L,QSA] Which triggered 500 internal server error, so I moved first two lines to the php.ini file. after that, error disappeared, but redirect is not working, it simply redirects to the empty page, error log shows: file not found also, another log shows: PHP Warning: Unknown: open_basedir restriction in effect. File() is not within the allowed path(s): (/home/:/usr/lib/php:/usr/local/lib/php:/tmp/:/usr/local/:/usr/bin) in Unknown on line 0 I tried to write in RewriteLog which triggered 500 server error again A little help? Thank you in advance P.S. cPanel 11.24.5-STABLE (Build: 38506) Apache version 2.2.15 (Unix) MySQL version 5.0.85-community PHP version 5.2.9 Operating system Linux Apache/2.2.15 (Unix) mod_ssl/2.2.15 OpenSSL/0.9.8e-fips-rhel5 mod_auth_passthrough/2.1 mod_bwlimited/1.4 FrontPage/5.0.2.2635 mod_fcgid/2.3.5

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• SWIG generated code fails to run on PHP 5.3.2 undefined symbol: zend_error_noreturn

  - by wookiebreath

  I have a library that I have been using successfully with PHP 5.1.6 with the help of some wrapper code generated by SWIG (v1.3.40). I have just upgraded to PHP 5.3.2 and I am seeing the following error: PHP Warning: PHP Startup: Unable to load dynamic library '/usr/lib/php/modules/myLib_php.so' - /usr/lib/php/modules/myLib_php.so: undefined symbol: zend_error_noreturn in Unknown on line 0 On investigation it appears that the wrapper code produced by SWIG (myLib_wrap.c) includes calls to the PHP function: zend_error_noreturn and that this function isn't available in PHP 5.3.2? Has anyone seen this issue before? Things seem to work if I manually update the generated code so that instead of calling zend_error_noreturn it just calls zend_error. Is this approach safe?

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• JavaScript "Cannot retrieve referenced URL"

  - by jb

  I have JavaScript inside a .wsf file and I'm getting the error: C:\bin\LDLSInfo.wsf(53, 34) Windows Script Host: Cannot retrieve referenced URL: S:\tools\JScript\lib\StandardWSH.js At line 53, it says <script language="JScript" src="S:\tools\JScript\lib\StandardWSH.js"/> I know that LDLSInfo.wsf (the main script) and StandardWSH.js (the script to load) both work fine, because I've ran them from a different machine. It works fine on one machine and not on the other, both are Windows 7 x64 computers. So I'm thinking I'm missing some .dll's. Thanks for the help, -jb

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