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  • Som maps problem in matlab

    - by Serdar Demir
    I have a text file that include data. My text file: young, myopic, no, reduced, no young, myopic, no, normal, soft young, myopic, yes, reduced, no young, myopic, yes, normal, hard young, hyperopia, no, reduced, no young, hyperopia, no, normal, soft young, hyperopia, yes, reduced, no young, hyperopia, yes, normal, hard I read my text file load method %young=1 %myopic=2 %no=3 etc. load iris.txt net = newsom(1,[1 5]); [net,tr] = train(net,1); plotsomplanes(net); Error code: ??? Undefined function or method 'plotsomplanes' for input arguments of type 'network'.

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  • Convert cell array of cells into cell array of strings in MATLAB

    - by yuk
    Using regexp with tokens on cell array of strings I've got cell array of cells. Here is simplified example: S = {'string 1';'string 2';'string 3'}; res = regexp(S,'(\d)','tokens') res = {1x1 cell} {1x1 cell} {1x1 cell} res{2}{1} ans = '2' I know I have only one match per cell string in S. How I can convert this output into cell arrays of strings in a vectorized form?

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  • accelerating Wheel - psychtoolbox in matlab

    - by ariel
    Hi I am trying to write a code that will show an acceleration wheel. as long as the user press 'a' the wheel should accelerate counterclock wize. the thing is that it turn in the right direction but it doesn't accelerate. This is the code I am using . PTB-3 windows XP. img=imread('c:\images.jpg'); [yimg,ximg,z]=size(img); rot_spd = 1; larrow = KbName('a'); % modify this for Windows rarrow = KbName('b'); [w,rect]=Screen('OpenWindow',0,[0 0 0]); sx = 400; % desired x-size of image (pixels) sy = yimg*sx/ximg; % desired y-size--keep proportional t = Screen('MakeTexture',w,img); bdown=0; th = 0; % initial rotation angle (degrees) HideCursor while(~any(bdown)) % exit loop if mouse button is pressed [x,y,bdown]=GetMouse; [keyisdown,secs,keycode] = KbCheck; if(keycode(larrow)) th = th - rot_spd-1; % accelerate counterclockwise th end if(keycode(rarrow)) th = th + rot_spd+1; % accelerate clockwise th end destrect=[x-sx/2,y-sy/2,x+sx/2,y+sy/2]; Screen('DrawTexture',w,t,[],destrect,th); Screen('Flip',w); end Screen('Close',w) ShowCursor If anyone has an odea why it doesn't accelerate I'd appriciate it very much. Ariel

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  • Retrieve blob field from mySQL database with MATLAB

    - by yuk
    I'm accessing public mySQL database using JDBC and mySQL java connector. exonCount is int(10), exonStarts and exonEnds are longblob fields. javaaddpath('mysql-connector-java-5.1.12-bin.jar') host = 'genome-mysql.cse.ucsc.edu'; user = 'genome'; password = ''; dbName = 'hg18'; jdbcString = sprintf('jdbc:mysql://%s/%s', host, dbName); jdbcDriver = 'com.mysql.jdbc.Driver'; dbConn = database(dbName, user , password, jdbcDriver, jdbcString); gene.Symb = 'CDKN2B'; % Check to make sure that we successfully connected if isconnection(dbConn) qry = sprintf('SELECT exonCount, exonStarts, exonEnds FROM refFlat WHERE geneName=''%s''',gene.Symb); result = get(fetch(exec(dbConn, qry)), 'Data'); fprintf('Connection failed: %s\n', dbConn.Message); end Here is the result: result = [2] [18x1 int8] [18x1 int8] [2] [18x1 int8] [18x1 int8] result{1,2}' ans = 50 49 57 57 50 57 48 49 44 50 49 57 57 56 54 55 51 44 This is wrong. The length of 2nd and 3rd columnsshould match the number in the 1st column. The 1st blob, for example, should be [21992901; 21998673]. How I can convert it? Update: Just after submitting this question I thought it might be hex representation of a string. And it was confirmed: >> char(result{1,2}') ans = 21992901,21998673, So now I need to convert all blobs hex data into numeric vectors. Still thinking to do it in a vectorized way, since number of rows can be large.

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  • BMP2AVI program in matlab

    - by ariel
    HI I wrote a program that use to work (swear to god) and has stopped from working. this code takes a series of BMPs and convert them into avi file. this is the code: path4avi='C:/FadeOutMask/'; %dont forget the '/' in the end of the path pathOfFrames='C:/FadeOutMask/'; NumberOfFiles=1; NumberOfFrames=10; %1:1:(NumberOfFiles) for i=0:1:(NumberOfFiles-1) FileName=strcat(path4avi,'FadeMaskAsael',int2str(i),'.avi') %the generated file aviobj = avifile(FileName,'compression','None'); aviobj.fps=10; for j=0:1:(NumberOfFrames-1) Frame=strcat(pathOfFrames,'MaskFade',int2str(i*10+j),'.bmp') %not a good name for thedirectory [Fa,map]=imread(Frame); imshow(Fa,map); F=getframe(); aviobj=addframe(aviobj,F) end aviobj=close(aviobj); end And this is the error I get: ??? Error using ==> checkDisplayRange at 22 HIGH must be greater than LOW. Error in ==> imageDisplayValidateParams at 57 common_args.DisplayRange = checkDisplayRange(common_args.DisplayRange,mfilename); Error in ==> imageDisplayParseInputs at 79 common_args = imageDisplayValidateParams(common_args); Error in ==> imshow at 199 [common_args,specific_args] = ... Error in ==> ConverterDosenWorkd at 19 imshow(Fa,map); for some reason I cant put it as code segments. sorry thank you Ariel

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  • This is more a matlab/math brain teaser than a question

    - by gd047
    Here is the setup. No assumptions for the values I am using. n=2; % dimension of vectors x and (square) matrix P r=2; % number of x vectors and P matrices x1 = [3;5] x2 = [9;6] x = cat(2,x1,x2) P1 = [6,11;15,-1] P2 = [2,21;-2,3] P(:,1)=P1(:) P(:,2)=P2(:) modePr = [-.4;16] TransPr=[5.9,0.1;20.2,-4.8] pred_modePr = TransPr'*modePr MixPr = TransPr.*(modePr*(pred_modePr.^(-1))') x0 = x*MixPr Then it was time to apply the following formula to get myP , where µij is MixPr. I used this code to get it: myP=zeros(n*n,r); Ptables(:,:,1)=P1; Ptables(:,:,2)=P2; for j=1:r for i = 1:r; temp = MixPr(i,j)*(Ptables(:,:,i) + ... (x(:,i)-x0(:,j))*(x(:,i)-x0(:,j))'); myP(:,j)= myP(:,j) + temp(:); end end Some brilliant guy proposed this formula as another way to produce myP for j=1:r xk1=x(:,j); PP=xk1*xk1'; PP0(:,j)=PP(:); xk1=x0(:,j); PP=xk1*xk1'; PP1(:,j)=PP(:); end myP = (P+PP0)*MixPr-PP1 I tried to formulate the equality between the two methods and seems to be this one. To make things easier, I ignored from both methods the summation of matrix P. where the first part denotes the formula that I used, while the second comes from his code snippet. Do you think this is an obvious equality? If yes, ignore all the above and just try to explain why. I could only start from the LHS, and after some algebra I think I proved it equals to the RHS. However I can't see how did he (or she) think of it in the first place.

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  • Orcad / Matlab: How to plot the roots of a polynomial

    - by Tom
    Hi everyone, Im trying to plot the roots of a polynomial, and i just cant get it. First i create my polynomial p5 = [1 0 0 0 0 -1] %x^5 - 1 r5 = roots(p5) stem (p5) Im using the stem function, but I would like to remove the stems, and just get the circle around the roots. Is this possible, is stem the right command? Thanks in advance, PS: This is not homework, but very close, will tag it if requested.

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  • Matlab plot inside a loop

    - by Macarse
    I am doing something like this: a = [1:100]; for i=1:100, plot([1:i], a(1:i)); end My issue is that the plot is not shown until the loop is finish. How can I show/update the plot in every iteration?

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  • How to apply a patch

    - by Niroshan
    I have this patch code which i downloaded from a web article (Calling Matlab from Java). http://www.cs.virginia.edu/~whitehouse/matlab/JavaMatlab.html But I donot know how to apply it in my windowsXp running computer. What I'm trying to do is call Matlab script file from java. I have found the necessary source codes and every thing but this mater is holding be back. Any help is highly appreciated. Thank you. Here's the patch code. Index: MatlabControl.java =================================================================== RCS file: /cvsroot/tinyos/tinyos-1.x/tools/java/net/tinyos/matlab/MatlabControl.java,v retrieving revision 1.3 diff -u -r1.3 MatlabControl.java --- MatlabControl.java 31 Mar 2004 18:43:50 -0000 1.3 +++ MatlabControl.java 16 Aug 2004 20:36:51 -0000 @@ -214,7 +214,8 @@ matlab.evalConsoleOutput(command); }else{ - matlab.fevalConsoleOutput(command, args, 0, null); + // matlab.fevalConsoleOutput(command, args, 0, null); + matlab.fevalConsoleOutput(command, args); } } catch (Exception e) { System.out.println(e.toString());

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  • MATLAB feature function

    - by yuk
    I'm curious where to find a complete description of FEATURE function? Which arguments it accepts? No documentation was found. I heard only about memstats and getpid. Anything else? >> which feature built-in (undocumented)

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  • MATLAB using MAT2CELL

    - by Ali
    i have the following matrices letter=[A B C D E F G H I J K L M N O P Q R S T U V W X Y Z ... a b c d e f g h ii jj k l m o p q r s t u v w x y z]; number=[one two three four five six seven eight nine zero]; character =[number letter]; Character becomes a matrix of 42 by 1464, but i would like to break it into cells of 42 by 24 using mat2cell. How can i please do it, every time i try i get an error????

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  • Updating GUI axes in MATLAB

    - by James
    HI, I am making a GUI for a program I have created, where I need to be able to change the position of a load along a beam. I have set up the axes and the slider properly, but I am unsure how to get the axes to update, as I can't find any examples that show how to do this on the internet. At present, as I move the load, the position updates properly, but the old position stays on screen as well, which is quite annoying. Can anyone recommend any good examples that show how to do this, or does anyone have a suggestion of how to go about refreshing the axes? Regards, James

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  • Changing the x-axis of seqlogo figures in matlab

    - by JudoWill
    I'm making a large number of seqlogos programatically. They are hundreds of columns wide and so running a seqlogo normally creates letters that are too thin to see. I've noticed that I only care about a few of these columns (not necessarily consecutive columns) ... most are noise but some are highly conserved. I use something like this snippet: conserve_cell = seqlogo(wide_seqs, 'displaylogo', false); high_bit_cols = any(conserve_cell{2}>1.0,1); [~, handle] = seqlogo(wide_seqs(:,high_bit_cols )); Although when I do this I lose the information about which columns the data came from. Normally I would just change the x-axis of the seqlogo. However, seqlogo's are some sort of crazy java-based object and calls like: set(handle, 'xticklabel', num2str(find(high_bit_cols))) don't work. Any help would be greatly appreciated. Thanks, Will

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  • Can't compare the norm of a vector to 1 in matlab

    - by Ian
    I'm trying to find out wether a matrix is orthonormal. I begin by checking if the vectors are normal by doing for j=1:2; if norm(S:,j) ~= 1; return; % Not normal vector end end But when norm returns 1.0000 comparing that to 1 is true and the function returns, which is not what i want. Any ideas? Thx

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  • skeleton in MATLAB

    - by AZIRAR
    The objective of skeletonization is to represent a binary image with a minimum set of pixels. The skeleton must account for geometrical properties of the form and retain associative relationships. My question here is how can i get a skeleton from binary image ?

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  • Out of memory error while using clusterdata in MATLAB

    - by Hossein
    Hi, I am trying to cluster a Matrix (size: 20057x2).: T = clusterdata(X,cutoff); but I get this error: ??? Error using == pdistmex Out of memory. Type HELP MEMORY for your options. Error in == pdist at 211 Y = pdistmex(X',dist,additionalArg); Error in == linkage at 139 Z = linkagemex(Y,method,pdistArg); Error in == clusterdata at 88 Z = linkage(X,linkageargs{1},pdistargs); Error in == kmeansTest at 2 T = clusterdata(X,1); can someone help me. I have 4GB of ram, but think that the problem is from somewhere else..

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  • Matlab: Analysis of signal

    - by Mateusz
    Hi, I have a problem with this task: For free route perform frequency analysis and give parametrs of each signal component: time of beginning and ending of each component beginning and ending frequency amplitude (in time domain) in the beginning and end of each signal's component level of noise in dB Assume, that, the parametrs of each component like amplitude, frequency is changing lineary in time. Frequency of sampling is 1000Hz For example I have signal like this: Nx=64; fs=1000; t=1/fs*(0:Nx-1); %========================== A1=1; A2=4; f1=500; f2=1000; x1=A1*cos(2*pi*f1*t); x2=A2*sin(2*pi*f2*t); %========================== x=x1+x2;

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  • How to create a function with vectors and vertical asymptote using MATLAB

    - by Pedro J Trinidad
    Plot the function f(x) = 1.5x / x-4 for -10 equal or less than X equal or less than 10. Notice that the function have a vertical asymptote at x = 4. Plot the function by creating two vectors for the domain of x. The first vector (call it x1) with elements from -10 to 3.7, and the second vector (calle it x2) with elements from 4.3 to 10. For each of the X vector create a Y vector (call them y1 and y2) with the corresponding values of Y according to the function. To plot the function make two curves in the same plot (y1 vs. x1 and y2 vs. x2).

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  • MATLAB how to write header in text file

    - by Jessy
    How to write a text header in text file? for example in the example below, how to write the header code salay month just once? Code Salary Month 12 1000 12 14 1020 11 11 1212 9 fid = fopen('analysis1.txt','wt'); for i=1:10 array = []; % empty the array .... array = [code salary month]; format short g; fprintf(fid,'%g\t %g\t %g\n',array); % write to file end fclose(fid);

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  • Matlab - Propagate points orthogonally on to the edge of shape boundaries

    - by Graham
    Hi I have a set of points which I want to propagate on to the edge of shape boundary defined by a binary image. The shape boundary is defined by a 1px wide white edge. I also have the coordinates of these points stored in a 2 row by n column matrix. The shape forms a concave boundary with no holes within itself made of around 2500 points. I want to cast a ray from each point from the set of points in an orthogonal direction and detect at which point it intersects the shape boundary at. What would be the best method to do this? Are there some sort of ray tracing algorithms that could be used? Or would it be a case of taking orthogonal unit vector and multiplying it by a scalar and testing after multiplication if the end point of the vector is outside the shape boundary. When the end point of the unit vector is outside the shape, just find the point of intersection? Thank you very much in advance for any help!

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